Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 RNU6-242P-201ENST00000384359 107 ntBASIC-1.47□□□□□ -2.64
CPSF3Q9UKF6 MIR29B1-201ENST00000385015 81 ntBASIC-1.47□□□□□ -2.64
CPSF3Q9UKF6 Y_RNA.81-201ENST00000362997 102 ntBASIC-1.48□□□□□ -2.65
CPSF3Q9UKF6 RNA5SP215-201ENST00000363440 122 ntBASIC-1.48□□□□□ -2.65
CPSF3Q9UKF6 RNU6-1276P-201ENST00000365372 104 ntBASIC-1.48□□□□□ -2.65
CPSF3Q9UKF6 SNX3P1X-201ENST00000414887 175 ntBASIC-1.48□□□□□ -2.65
CPSF3Q9UKF6 Y_RNA.94-201ENST00000363068 106 ntBASIC-1.49□□□□□ -2.65
CPSF3Q9UKF6 Y_RNA.109-201ENST00000363215 102 ntBASIC-1.49□□□□□ -2.65
CPSF3Q9UKF6 RNA5SP192-201ENST00000364404 120 ntBASIC-1.49□□□□□ -2.65
CPSF3Q9UKF6 MIR630-201ENST00000384957 97 ntBASIC-1.49□□□□□ -2.65
CPSF3Q9UKF6 MIR5683-201ENST00000636514 76 ntBASIC-1.49□□□□□ -2.65
CPSF3Q9UKF6 RNU6-1241P-201ENST00000384536 107 ntBASIC-1.5□□□□□ -2.65
CPSF3Q9UKF6 MIR4666B-201ENST00000578142 81 ntBASIC-1.5□□□□□ -2.65
CPSF3Q9UKF6 MIR5582-201ENST00000579697 68 ntBASIC-1.5□□□□□ -2.65
CPSF3Q9UKF6 MIR6818-201ENST00000621576 65 ntBASIC-1.5□□□□□ -2.65
CPSF3Q9UKF6 MIR429-201ENST00000362106 83 ntBASIC-1.51□□□□□ -2.65
CPSF3Q9UKF6 RNU6-696P-201ENST00000390834 107 ntBASIC-1.51□□□□□ -2.65
CPSF3Q9UKF6 RNA5SP26-201ENST00000362406 119 ntBASIC-1.52□□□□□ -2.65
CPSF3Q9UKF6 RNA5SP331-201ENST00000364986 107 ntBASIC-1.52□□□□□ -2.65
CPSF3Q9UKF6 Y_RNA.369-201ENST00000365568 117 ntBASIC-1.52□□□□□ -2.65
CPSF3Q9UKF6 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.52□□□□□ -2.65
CPSF3Q9UKF6 MIR507-201ENST00000385234 94 ntBASIC-1.52□□□□□ -2.65
CPSF3Q9UKF6 RNU6-70P-201ENST00000516438 60 ntBASIC-1.52□□□□□ -2.65
CPSF3Q9UKF6 MIR3165-201ENST00000579874 75 ntBASIC-1.52□□□□□ -2.65
CPSF3Q9UKF6 Y_RNA.788-201ENST00000622394 112 ntBASIC-1.53□□□□□ -2.65
CPSF3Q9UKF6 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.54□□□□□ -2.66
CPSF3Q9UKF6 MIR3115-201ENST00000577915 68 ntBASIC-1.54□□□□□ -2.66
CPSF3Q9UKF6 MIR4490-201ENST00000582647 84 ntBASIC-1.54□□□□□ -2.66
CPSF3Q9UKF6 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.54□□□□□ -2.66
CPSF3Q9UKF6 SNORD113-2-201ENST00000391082 72 ntBASIC-1.55□□□□□ -2.66
CPSF3Q9UKF6 MIR548Q-201ENST00000408404 100 ntBASIC-1.55□□□□□ -2.66
CPSF3Q9UKF6 RNU7-134P-201ENST00000458997 64 ntBASIC-1.55□□□□□ -2.66
CPSF3Q9UKF6 RNU6-598P-201ENST00000364017 105 ntBASIC-1.56□□□□□ -2.66
CPSF3Q9UKF6 RNU6-787P-201ENST00000384032 107 ntBASIC-1.56□□□□□ -2.66
CPSF3Q9UKF6 MIR154-201ENST00000385243 84 ntBASIC-1.56□□□□□ -2.66
CPSF3Q9UKF6 RNU6-706P-201ENST00000517229 104 ntBASIC-1.56□□□□□ -2.66
CPSF3Q9UKF6 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.58□□□□□ -2.66
CPSF3Q9UKF6 RNU6-820P-201ENST00000384273 107 ntBASIC-1.58□□□□□ -2.66
CPSF3Q9UKF6 SNORD116-24-201ENST00000384549 92 ntBASIC-1.58□□□□□ -2.66
CPSF3Q9UKF6 MIR3134-201ENST00000579433 74 ntBASIC-1.58□□□□□ -2.66
CPSF3Q9UKF6 RNA5SP173-201ENST00000364857 136 ntBASIC-1.59□□□□□ -2.66
CPSF3Q9UKF6 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.59□□□□□ -2.66
CPSF3Q9UKF6 AC062037.1-201ENST00000605302 128 ntBASIC-1.59□□□□□ -2.66
CPSF3Q9UKF6 RNU6-895P-201ENST00000384125 103 ntBASIC-1.6□□□□□ -2.67
CPSF3Q9UKF6 SNORD116-16-201ENST00000384533 92 ntBASIC-1.6□□□□□ -2.67
CPSF3Q9UKF6 AC138207.3-201ENST00000585289 166 ntBASIC-1.6□□□□□ -2.67
CPSF3Q9UKF6 SNORD115-31-201ENST00000365318 82 ntBASIC-1.61□□□□□ -2.67
CPSF3Q9UKF6 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.61□□□□□ -2.67
CPSF3Q9UKF6 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.62□□□□□ -2.67
CPSF3Q9UKF6 SNORA41B-201ENST00000384785 128 ntBASIC-1.62□□□□□ -2.67
CPSF3Q9UKF6 RNU6-576P-201ENST00000390854 102 ntBASIC-1.62□□□□□ -2.67
CPSF3Q9UKF6 RPL35AP4-201ENST00000412007 102 ntBASIC-1.62□□□□□ -2.67
CPSF3Q9UKF6 RNA5SP461-201ENST00000516451 104 ntBASIC-1.62□□□□□ -2.67
CPSF3Q9UKF6 U2.18-201ENST00000622185 84 ntBASIC-1.62□□□□□ -2.67
CPSF3Q9UKF6 RNU6-687P-201ENST00000516443 89 ntBASIC-1.63□□□□□ -2.67
CPSF3Q9UKF6 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.64□□□□□ -2.67
CPSF3Q9UKF6 MIR601-201ENST00000385256 79 ntBASIC-1.66□□□□□ -2.68
CPSF3Q9UKF6 RNU6-630P-201ENST00000391258 106 ntBASIC-1.66□□□□□ -2.68
CPSF3Q9UKF6 AC090616.4-201ENST00000448026 115 ntBASIC-1.67□□□□□ -2.68
CPSF3Q9UKF6 RNU6-1298P-201ENST00000362456 101 ntBASIC-1.68□□□□□ -2.68
CPSF3Q9UKF6 MIR1468-201ENST00000410600 86 ntBASIC-1.68□□□□□ -2.68
CPSF3Q9UKF6 MIR198-201ENST00000637333 62 ntBASIC-1.68□□□□□ -2.68
CPSF3Q9UKF6 RNU6-164P-201ENST00000364604 103 ntBASIC-1.69□□□□□ -2.68
CPSF3Q9UKF6 SNORD1B-201ENST00000363091 84 ntBASIC-1.7□□□□□ -2.68
CPSF3Q9UKF6 RNU6-411P-201ENST00000384451 107 ntBASIC-1.7□□□□□ -2.68
CPSF3Q9UKF6 MIR520D-201ENST00000385002 87 ntBASIC-1.7□□□□□ -2.68
CPSF3Q9UKF6 RNA5SP170-201ENST00000517150 101 ntBASIC-1.7□□□□□ -2.68
CPSF3Q9UKF6 RNU6-608P-201ENST00000383927 104 ntBASIC-1.71□□□□□ -2.68
CPSF3Q9UKF6 MIR548AA1-201ENST00000384971 97 ntBASIC-1.72□□□□□ -2.68
CPSF3Q9UKF6 HLA-S-202ENST00000425174 53 ntBASIC-1.72□□□□□ -2.68
CPSF3Q9UKF6 RNU6-1015P-201ENST00000517121 99 ntBASIC-1.72□□□□□ -2.68
CPSF3Q9UKF6 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.72□□□□□ -2.68
CPSF3Q9UKF6 MIR8485-201ENST00000401372 91 ntBASIC-1.73□□□□□ -2.69
CPSF3Q9UKF6 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.73□□□□□ -2.69
CPSF3Q9UKF6 U7.4-201ENST00000614961 63 ntBASIC-1.73□□□□□ -2.69
CPSF3Q9UKF6 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.74□□□□□ -2.69
CPSF3Q9UKF6 AC091912.2-201ENST00000624798 167 ntBASIC-1.74□□□□□ -2.69
CPSF3Q9UKF6 SNORD73B-201ENST00000364394 72 ntBASIC-1.75□□□□□ -2.69
CPSF3Q9UKF6 RNU6-542P-201ENST00000516405 103 ntBASIC-1.75□□□□□ -2.69
CPSF3Q9UKF6 MIR3170-201ENST00000582699 77 ntBASIC-1.75□□□□□ -2.69
CPSF3Q9UKF6 MIR6874-201ENST00000635894 71 ntBASIC-1.76□□□□□ -2.69
CPSF3Q9UKF6 MIR5591-201ENST00000578248 65 ntBASIC-1.77□□□□□ -2.69
CPSF3Q9UKF6 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.77□□□□□ -2.69
CPSF3Q9UKF6 MIR3202-2-201ENST00000635980 79 ntBASIC-1.77□□□□□ -2.69
CPSF3Q9UKF6 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.78□□□□□ -2.69
CPSF3Q9UKF6 RNA5SP180-201ENST00000516181 101 ntBASIC-1.78□□□□□ -2.69
CPSF3Q9UKF6 MIR4770-201ENST00000579149 58 ntBASIC-1.78□□□□□ -2.69
CPSF3Q9UKF6 MIR1285-2-201ENST00000408311 88 ntBASIC-1.79□□□□□ -2.7
CPSF3Q9UKF6 RNU6-634P-201ENST00000459134 106 ntBASIC-1.79□□□□□ -2.7
CPSF3Q9UKF6 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.8□□□□□ -2.7
CPSF3Q9UKF6 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.81□□□□□ -2.7
CPSF3Q9UKF6 MIR889-201ENST00000401280 79 ntBASIC-1.81□□□□□ -2.7
CPSF3Q9UKF6 RNU6-92P-201ENST00000605893 104 ntBASIC-1.81□□□□□ -2.7
CPSF3Q9UKF6 RNU6-540P-201ENST00000384622 101 ntBASIC-1.82□□□□□ -2.7
CPSF3Q9UKF6 RNU6-172P-201ENST00000411000 93 ntBASIC-1.82□□□□□ -2.7
CPSF3Q9UKF6 MIR365A-201ENST00000362260 87 ntBASIC-1.83□□□□□ -2.7
CPSF3Q9UKF6 RNU6-573P-201ENST00000383938 106 ntBASIC-1.83□□□□□ -2.7
CPSF3Q9UKF6 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.83□□□□□ -2.7
CPSF3Q9UKF6 RNU6-1124P-201ENST00000384169 107 ntBASIC-1.83□□□□□ -2.7
CPSF3Q9UKF6 RNY4P29-201ENST00000410801 97 ntBASIC-1.83□□□□□ -2.7
Retrieved 100 of 98,524 protein–RNA pairs in 143.7 ms