Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 RNU6-1174P-201ENST00000517278 101 ntBASIC-1.89□□□□□ -2.71
VPS28Q9UK41 U6.58-201ENST00000613107 107 ntBASIC-1.89□□□□□ -2.71
VPS28Q9UK41 RNU6-698P-201ENST00000363523 107 ntBASIC-1.9□□□□□ -2.71
VPS28Q9UK41 RNU6-34P-201ENST00000364874 107 ntBASIC-1.9□□□□□ -2.71
VPS28Q9UK41 MIR507-201ENST00000385234 94 ntBASIC-1.9□□□□□ -2.71
VPS28Q9UK41 U4.2-201ENST00000618561 85 ntBASIC-1.9□□□□□ -2.71
VPS28Q9UK41 MIR5683-201ENST00000636514 76 ntBASIC-1.9□□□□□ -2.71
VPS28Q9UK41 RNA5SP89-201ENST00000410300 108 ntBASIC-1.91□□□□□ -2.72
VPS28Q9UK41 RNU6-49P-201ENST00000384256 107 ntBASIC-1.92□□□□□ -2.72
VPS28Q9UK41 MIR527-201ENST00000385244 85 ntBASIC-1.92□□□□□ -2.72
VPS28Q9UK41 RNU6-576P-201ENST00000390854 102 ntBASIC-1.92□□□□□ -2.72
VPS28Q9UK41 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.92□□□□□ -2.72
VPS28Q9UK41 MIR5588-201ENST00000581890 63 ntBASIC-1.92□□□□□ -2.72
VPS28Q9UK41 MIR6502-201ENST00000617296 76 ntBASIC-1.92□□□□□ -2.72
VPS28Q9UK41 Y_RNA.73-201ENST00000362910 113 ntBASIC-1.93□□□□□ -2.72
VPS28Q9UK41 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.93□□□□□ -2.72
VPS28Q9UK41 RNU6-587P-201ENST00000391282 106 ntBASIC-1.93□□□□□ -2.72
VPS28Q9UK41 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.93□□□□□ -2.72
VPS28Q9UK41 RNU6-983P-201ENST00000516004 103 ntBASIC-1.93□□□□□ -2.72
VPS28Q9UK41 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.93□□□□□ -2.72
VPS28Q9UK41 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.93□□□□□ -2.72
VPS28Q9UK41 RNU6-1094P-201ENST00000362416 104 ntBASIC-1.94□□□□□ -2.72
VPS28Q9UK41 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.94□□□□□ -2.72
VPS28Q9UK41 Y_RNA.325-201ENST00000365171 122 ntBASIC-1.94□□□□□ -2.72
VPS28Q9UK41 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.94□□□□□ -2.72
VPS28Q9UK41 SNORD19-201ENST00000391191 68 ntBASIC-1.94□□□□□ -2.72
VPS28Q9UK41 RNU6-668P-201ENST00000364180 107 ntBASIC-1.95□□□□□ -2.72
VPS28Q9UK41 Y_RNA.291-201ENST00000364886 113 ntBASIC-1.95□□□□□ -2.72
VPS28Q9UK41 RNA5SP215-201ENST00000363440 122 ntBASIC-1.96□□□□□ -2.72
VPS28Q9UK41 Y_RNA.282-201ENST00000364793 102 ntBASIC-1.96□□□□□ -2.72
VPS28Q9UK41 Y_RNA.316-201ENST00000365118 111 ntBASIC-1.96□□□□□ -2.72
VPS28Q9UK41 RNU6-696P-201ENST00000390834 107 ntBASIC-1.96□□□□□ -2.72
VPS28Q9UK41 RNU6-979P-201ENST00000383896 107 ntBASIC-1.97□□□□□ -2.72
VPS28Q9UK41 MIR548Q-201ENST00000408404 100 ntBASIC-1.97□□□□□ -2.72
VPS28Q9UK41 SNORD113.1-201ENST00000363280 73 ntBASIC-1.98□□□□□ -2.73
VPS28Q9UK41 RNA5SP86-201ENST00000390869 98 ntBASIC-1.98□□□□□ -2.73
VPS28Q9UK41 MIR548V-201ENST00000584165 80 ntBASIC-1.98□□□□□ -2.73
VPS28Q9UK41 U4.4-201ENST00000620626 117 ntBASIC-1.98□□□□□ -2.73
VPS28Q9UK41 AP002795.1-201ENST00000534879 84 ntBASIC-1.99□□□□□ -2.73
VPS28Q9UK41 RNA5SP26-201ENST00000362406 119 ntBASIC-2□□□□□ -2.73
VPS28Q9UK41 SNORD18.1-201ENST00000363807 70 ntBASIC-2□□□□□ -2.73
VPS28Q9UK41 Y_RNA.313-201ENST00000365095 103 ntBASIC-2.01□□□□□ -2.73
VPS28Q9UK41 Y_RNA.109-201ENST00000363215 102 ntBASIC-2.02□□□□□ -2.73
VPS28Q9UK41 RNU7-171P-201ENST00000459581 62 ntBASIC-2.02□□□□□ -2.73
VPS28Q9UK41 RNA5SP173-201ENST00000364857 136 ntBASIC-2.03□□□□□ -2.73
VPS28Q9UK41 SNORD45A-201ENST00000384512 84 ntBASIC-2.03□□□□□ -2.73
VPS28Q9UK41 SNORD113-2-201ENST00000391082 72 ntBASIC-2.03□□□□□ -2.73
VPS28Q9UK41 RNY4P30-201ENST00000410216 95 ntBASIC-2.03□□□□□ -2.73
VPS28Q9UK41 SNORD114-3-201ENST00000364969 75 ntBASIC-2.04□□□□□ -2.74
VPS28Q9UK41 RNU6-1262P-201ENST00000516217 96 ntBASIC-2.04□□□□□ -2.74
VPS28Q9UK41 U2.22-201ENST00000636441 106 ntBASIC-2.04□□□□□ -2.74
VPS28Q9UK41 RNY4P27-201ENST00000363341 96 ntBASIC-2.05□□□□□ -2.74
VPS28Q9UK41 MIR630-201ENST00000384957 97 ntBASIC-2.05□□□□□ -2.74
VPS28Q9UK41 MIR664A-201ENST00000626086 82 ntBASIC-2.05□□□□□ -2.74
VPS28Q9UK41 MIR4723-201ENST00000585070 81 ntBASIC-2.06□□□□□ -2.74
VPS28Q9UK41 MIR1245B-201ENST00000636115 69 ntBASIC-2.06□□□□□ -2.74
VPS28Q9UK41 MIR4712-201ENST00000583750 82 ntBASIC-2.07□□□□□ -2.74
VPS28Q9UK41 AC091912.2-201ENST00000624798 167 ntBASIC-2.07□□□□□ -2.74
VPS28Q9UK41 RNU6-164P-201ENST00000364604 103 ntBASIC-2.08□□□□□ -2.74
VPS28Q9UK41 Y_RNA.375-201ENST00000365625 101 ntBASIC-2.08□□□□□ -2.74
VPS28Q9UK41 RNU6-242P-201ENST00000384359 107 ntBASIC-2.08□□□□□ -2.74
VPS28Q9UK41 MIR548H1-201ENST00000408610 102 ntBASIC-2.08□□□□□ -2.74
VPS28Q9UK41 RPL35AP4-201ENST00000412007 102 ntBASIC-2.1□□□□□ -2.75
VPS28Q9UK41 Y_RNA.694-201ENST00000516677 117 ntBASIC-2.1□□□□□ -2.75
VPS28Q9UK41 RNU6-598P-201ENST00000364017 105 ntBASIC-2.11□□□□□ -2.75
VPS28Q9UK41 RNU6-153P-201ENST00000364422 104 ntBASIC-2.11□□□□□ -2.75
VPS28Q9UK41 RNU6-1241P-201ENST00000384536 107 ntBASIC-2.11□□□□□ -2.75
VPS28Q9UK41 MIR6874-201ENST00000635894 71 ntBASIC-2.11□□□□□ -2.75
VPS28Q9UK41 SNORD116-16-201ENST00000384533 92 ntBASIC-2.12□□□□□ -2.75
VPS28Q9UK41 MIR154-201ENST00000385243 84 ntBASIC-2.12□□□□□ -2.75
VPS28Q9UK41 RNU6-70P-201ENST00000516438 60 ntBASIC-2.12□□□□□ -2.75
VPS28Q9UK41 RNU6-228P-201ENST00000362700 106 ntBASIC-2.13□□□□□ -2.75
VPS28Q9UK41 Y_RNA.225-201ENST00000364326 97 ntBASIC-2.13□□□□□ -2.75
VPS28Q9UK41 RNU6-1152P-201ENST00000384576 107 ntBASIC-2.13□□□□□ -2.75
VPS28Q9UK41 MIR494-201ENST00000349529 81 ntBASIC-2.14□□□□□ -2.75
VPS28Q9UK41 RNU6-895P-201ENST00000384125 103 ntBASIC-2.14□□□□□ -2.75
VPS28Q9UK41 MIR450A2-201ENST00000385022 100 ntBASIC-2.14□□□□□ -2.75
VPS28Q9UK41 Y_RNA.223-201ENST00000364290 113 ntBASIC-2.15□□□□□ -2.75
VPS28Q9UK41 AC090616.4-201ENST00000448026 115 ntBASIC-2.15□□□□□ -2.75
VPS28Q9UK41 MIR487B-201ENST00000385021 84 ntBASIC-2.16□□□□□ -2.76
VPS28Q9UK41 RNU6-630P-201ENST00000391258 106 ntBASIC-2.16□□□□□ -2.76
VPS28Q9UK41 U2.18-201ENST00000622185 84 ntBASIC-2.17□□□□□ -2.76
VPS28Q9UK41 RNU6-294P-201ENST00000364999 102 ntBASIC-2.18□□□□□ -2.76
VPS28Q9UK41 RNU6-1276P-201ENST00000365372 104 ntBASIC-2.18□□□□□ -2.76
VPS28Q9UK41 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-2.19□□□□□ -2.76
VPS28Q9UK41 MIR548AA1-201ENST00000384971 97 ntBASIC-2.21□□□□□ -2.76
VPS28Q9UK41 Y_RNA.603-201ENST00000410571 108 ntBASIC-2.21□□□□□ -2.76
VPS28Q9UK41 AC108019.1-201ENST00000512540 175 ntBASIC-2.21□□□□□ -2.76
VPS28Q9UK41 Y_RNA.94-201ENST00000363068 106 ntBASIC-2.22□□□□□ -2.76
VPS28Q9UK41 MIR1207-201ENST00000408249 87 ntBASIC-2.22□□□□□ -2.76
VPS28Q9UK41 Y_RNA.678-201ENST00000516408 96 ntBASIC-2.22□□□□□ -2.76
VPS28Q9UK41 RNU6-1247P-201ENST00000516622 98 ntBASIC-2.22□□□□□ -2.76
VPS28Q9UK41 MIR4666B-201ENST00000578142 81 ntBASIC-2.22□□□□□ -2.76
VPS28Q9UK41 RNU6-1111P-201ENST00000391118 107 ntBASIC-2.23□□□□□ -2.77
VPS28Q9UK41 AC018880.2-201ENST00000414265 201 ntBASIC-2.23□□□□□ -2.77
VPS28Q9UK41 RNU6-118P-201ENST00000516552 102 ntBASIC-2.23□□□□□ -2.77
VPS28Q9UK41 SNORA41B-201ENST00000384785 128 ntBASIC-2.24□□□□□ -2.77
VPS28Q9UK41 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-2.24□□□□□ -2.77
VPS28Q9UK41 RNU6-608P-201ENST00000383927 104 ntBASIC-2.25□□□□□ -2.77
VPS28Q9UK41 Y_RNA.475-201ENST00000384345 101 ntBASIC-2.25□□□□□ -2.77
Retrieved 100 of 98,524 protein–RNA pairs in 174 ms