Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 HLA-S-202ENST00000425174 53 ntBASIC-2.24□□□□□ -2.77
CHMP4AQ9BY43 RNU6-919P-201ENST00000516731 104 ntBASIC-2.24□□□□□ -2.77
CHMP4AQ9BY43 MIR548V-201ENST00000584165 80 ntBASIC-2.24□□□□□ -2.77
CHMP4AQ9BY43 snoMBII-202.2-201ENST00000517263 86 ntBASIC-2.25□□□□□ -2.77
CHMP4AQ9BY43 MIR5591-201ENST00000578248 65 ntBASIC-2.25□□□□□ -2.77
CHMP4AQ9BY43 MIR4770-201ENST00000579149 58 ntBASIC-2.25□□□□□ -2.77
CHMP4AQ9BY43 RNY4P27-201ENST00000363341 96 ntBASIC-2.26□□□□□ -2.77
CHMP4AQ9BY43 RNU6-698P-201ENST00000363523 107 ntBASIC-2.26□□□□□ -2.77
CHMP4AQ9BY43 RNU6-34P-201ENST00000364874 107 ntBASIC-2.26□□□□□ -2.77
CHMP4AQ9BY43 RNU6-696P-201ENST00000390834 107 ntBASIC-2.26□□□□□ -2.77
CHMP4AQ9BY43 IGLL4P-201ENST00000614590 133 ntBASIC-2.26□□□□□ -2.77
CHMP4AQ9BY43 MIR6874-201ENST00000635894 71 ntBASIC-2.26□□□□□ -2.77
CHMP4AQ9BY43 Y_RNA.282-201ENST00000364793 102 ntBASIC-2.27□□□□□ -2.77
CHMP4AQ9BY43 RNU6-215P-201ENST00000365169 102 ntBASIC-2.27□□□□□ -2.77
CHMP4AQ9BY43 RNU6-587P-201ENST00000391282 106 ntBASIC-2.27□□□□□ -2.77
CHMP4AQ9BY43 Y_RNA.109-201ENST00000363215 102 ntBASIC-2.29□□□□□ -2.78
CHMP4AQ9BY43 Y_RNA.607-201ENST00000410597 98 ntBASIC-2.29□□□□□ -2.78
CHMP4AQ9BY43 MIR8053-201ENST00000613344 75 ntBASIC-2.29□□□□□ -2.78
CHMP4AQ9BY43 RNU6-668P-201ENST00000364180 107 ntBASIC-2.3□□□□□ -2.78
CHMP4AQ9BY43 RNY1P1-201ENST00000364372 112 ntBASIC-2.31□□□□□ -2.78
CHMP4AQ9BY43 Y_RNA.426-201ENST00000384068 113 ntBASIC-2.31□□□□□ -2.78
CHMP4AQ9BY43 MIR4520-1-201ENST00000582609 70 ntBASIC-2.31□□□□□ -2.78
CHMP4AQ9BY43 U4.4-201ENST00000620626 117 ntBASIC-2.31□□□□□ -2.78
CHMP4AQ9BY43 Y_RNA.73-201ENST00000362910 113 ntBASIC-2.32□□□□□ -2.78
CHMP4AQ9BY43 RNU6-1131P-201ENST00000364955 107 ntBASIC-2.32□□□□□ -2.78
CHMP4AQ9BY43 Y_RNA.375-201ENST00000365625 101 ntBASIC-2.32□□□□□ -2.78
CHMP4AQ9BY43 Y_RNA.593-201ENST00000410292 98 ntBASIC-2.32□□□□□ -2.78
CHMP4AQ9BY43 RNU6-1262P-201ENST00000516217 96 ntBASIC-2.32□□□□□ -2.78
CHMP4AQ9BY43 MIR630-201ENST00000384957 97 ntBASIC-2.33□□□□□ -2.78
CHMP4AQ9BY43 RNU6-226P-201ENST00000363778 107 ntBASIC-2.34□□□□□ -2.78
CHMP4AQ9BY43 AL603908.1-201ENST00000406098 201 ntBASIC-2.34□□□□□ -2.78
CHMP4AQ9BY43 AC090616.4-201ENST00000448026 115 ntBASIC-2.34□□□□□ -2.78
CHMP4AQ9BY43 RNU6-315P-201ENST00000362666 107 ntBASIC-2.35□□□□□ -2.79
CHMP4AQ9BY43 SNORD113.1-201ENST00000363280 73 ntBASIC-2.35□□□□□ -2.79
CHMP4AQ9BY43 RNU6-1094P-201ENST00000362416 104 ntBASIC-2.37□□□□□ -2.79
CHMP4AQ9BY43 RNA5SP215-201ENST00000363440 122 ntBASIC-2.37□□□□□ -2.79
CHMP4AQ9BY43 SNORD45A-201ENST00000384512 84 ntBASIC-2.37□□□□□ -2.79
CHMP4AQ9BY43 RNU6-168P-201ENST00000516189 101 ntBASIC-2.37□□□□□ -2.79
CHMP4AQ9BY43 MIR664A-201ENST00000626086 82 ntBASIC-2.37□□□□□ -2.79
CHMP4AQ9BY43 SNORD113-2-201ENST00000391082 72 ntBASIC-2.38□□□□□ -2.79
CHMP4AQ9BY43 MIR5588-201ENST00000581890 63 ntBASIC-2.38□□□□□ -2.79
CHMP4AQ9BY43 RNU6-598P-201ENST00000364017 105 ntBASIC-2.39□□□□□ -2.79
CHMP4AQ9BY43 RNU6-44P-201ENST00000384045 107 ntBASIC-2.39□□□□□ -2.79
CHMP4AQ9BY43 RNU6-49P-201ENST00000384256 107 ntBASIC-2.39□□□□□ -2.79
CHMP4AQ9BY43 RNU6-789P-201ENST00000517105 102 ntBASIC-2.39□□□□□ -2.79
CHMP4AQ9BY43 Y_RNA.316-201ENST00000365118 111 ntBASIC-2.41□□□□□ -2.8
CHMP4AQ9BY43 RNU6-630P-201ENST00000391258 106 ntBASIC-2.41□□□□□ -2.8
CHMP4AQ9BY43 Y_RNA.603-201ENST00000410571 108 ntBASIC-2.41□□□□□ -2.8
CHMP4AQ9BY43 Y_RNA.684-201ENST00000516510 99 ntBASIC-2.42□□□□□ -2.8
CHMP4AQ9BY43 RNA5SP89-201ENST00000410300 108 ntBASIC-2.43□□□□□ -2.8
CHMP4AQ9BY43 U2.18-201ENST00000622185 84 ntBASIC-2.43□□□□□ -2.8
CHMP4AQ9BY43 RNA5SP173-201ENST00000364857 136 ntBASIC-2.44□□□□□ -2.8
CHMP4AQ9BY43 Y_RNA.442-201ENST00000384131 102 ntBASIC-2.45□□□□□ -2.8
CHMP4AQ9BY43 RNU6-400P-201ENST00000391173 106 ntBASIC-2.45□□□□□ -2.8
CHMP4AQ9BY43 RNU6-979P-201ENST00000383896 107 ntBASIC-2.46□□□□□ -2.8
CHMP4AQ9BY43 RNA5SP86-201ENST00000390869 98 ntBASIC-2.46□□□□□ -2.8
CHMP4AQ9BY43 RNU6-1152P-201ENST00000384576 107 ntBASIC-2.47□□□□□ -2.8
CHMP4AQ9BY43 MIR548AI-201ENST00000579940 88 ntBASIC-2.47□□□□□ -2.8
CHMP4AQ9BY43 RNU6-79P-201ENST00000362511 107 ntBASIC-2.48□□□□□ -2.81
CHMP4AQ9BY43 Y_RNA.340-201ENST00000365330 92 ntBASIC-2.48□□□□□ -2.81
CHMP4AQ9BY43 RNY4P30-201ENST00000410216 95 ntBASIC-2.48□□□□□ -2.81
CHMP4AQ9BY43 AC018880.2-201ENST00000414265 201 ntBASIC-2.48□□□□□ -2.81
CHMP4AQ9BY43 Y_RNA.232-201ENST00000364369 96 ntBASIC-2.49□□□□□ -2.81
CHMP4AQ9BY43 Y_RNA.313-201ENST00000365095 103 ntBASIC-2.49□□□□□ -2.81
CHMP4AQ9BY43 SNORD116-16-201ENST00000384533 92 ntBASIC-2.5□□□□□ -2.81
CHMP4AQ9BY43 Y_RNA.543-201ENST00000384649 107 ntBASIC-2.5□□□□□ -2.81
CHMP4AQ9BY43 Y_RNA.475-201ENST00000384345 101 ntBASIC-2.51□□□□□ -2.81
CHMP4AQ9BY43 MIR154-201ENST00000385243 84 ntBASIC-2.51□□□□□ -2.81
CHMP4AQ9BY43 RNU6-70P-201ENST00000516438 60 ntBASIC-2.51□□□□□ -2.81
CHMP4AQ9BY43 RNU6-895P-201ENST00000384125 103 ntBASIC-2.52□□□□□ -2.81
CHMP4AQ9BY43 RNU6-1241P-201ENST00000384536 107 ntBASIC-2.52□□□□□ -2.81
CHMP4AQ9BY43 RNU6-608P-201ENST00000383927 104 ntBASIC-2.53□□□□□ -2.81
CHMP4AQ9BY43 RNU6-1111P-201ENST00000391118 107 ntBASIC-2.53□□□□□ -2.81
CHMP4AQ9BY43 MIR520D-201ENST00000385002 87 ntBASIC-2.54□□□□□ -2.82
CHMP4AQ9BY43 RNU7-171P-201ENST00000459581 62 ntBASIC-2.54□□□□□ -2.82
CHMP4AQ9BY43 MIR4712-201ENST00000583750 82 ntBASIC-2.54□□□□□ -2.82
CHMP4AQ9BY43 MIR1245B-201ENST00000636115 69 ntBASIC-2.54□□□□□ -2.82
CHMP4AQ9BY43 MIR548AA1-201ENST00000384971 97 ntBASIC-2.55□□□□□ -2.82
CHMP4AQ9BY43 MIR548H1-201ENST00000408610 102 ntBASIC-2.55□□□□□ -2.82
CHMP4AQ9BY43 SNORA41B-201ENST00000384785 128 ntBASIC-2.57□□□□□ -2.82
CHMP4AQ9BY43 MIR494-201ENST00000349529 81 ntBASIC-2.58□□□□□ -2.82
CHMP4AQ9BY43 RNU6-242P-201ENST00000384359 107 ntBASIC-2.58□□□□□ -2.82
CHMP4AQ9BY43 RNU6-1267P-201ENST00000410747 107 ntBASIC-2.58□□□□□ -2.82
CHMP4AQ9BY43 RNU6-406P-201ENST00000516470 107 ntBASIC-2.58□□□□□ -2.82
CHMP4AQ9BY43 Y_RNA.291-201ENST00000364886 113 ntBASIC-2.59□□□□□ -2.82
CHMP4AQ9BY43 MIR3170-201ENST00000582699 77 ntBASIC-2.59□□□□□ -2.82
CHMP4AQ9BY43 RNU6-247P-201ENST00000362636 107 ntBASIC-2.6□□□□□ -2.83
CHMP4AQ9BY43 SNORD1B-201ENST00000363091 84 ntBASIC-2.62□□□□□ -2.83
CHMP4AQ9BY43 Y_RNA.678-201ENST00000516408 96 ntBASIC-2.62□□□□□ -2.83
CHMP4AQ9BY43 Y_RNA.175-201ENST00000363794 111 ntBASIC-2.63□□□□□ -2.83
CHMP4AQ9BY43 RNU6-995P-201ENST00000391244 107 ntBASIC-2.63□□□□□ -2.83
CHMP4AQ9BY43 MIR23C-201ENST00000579846 100 ntBASIC-2.63□□□□□ -2.83
CHMP4AQ9BY43 Y_RNA.228-201ENST00000364346 98 ntBASIC-2.65□□□□□ -2.83
CHMP4AQ9BY43 RNU6-1276P-201ENST00000365372 104 ntBASIC-2.66□□□□□ -2.84
CHMP4AQ9BY43 SNORD116-24-201ENST00000384549 92 ntBASIC-2.66□□□□□ -2.84
CHMP4AQ9BY43 MIR450A2-201ENST00000385022 100 ntBASIC-2.66□□□□□ -2.84
CHMP4AQ9BY43 RNU6-119P-201ENST00000364882 107 ntBASIC-2.67□□□□□ -2.84
CHMP4AQ9BY43 RNU6-540P-201ENST00000384622 101 ntBASIC-2.68□□□□□ -2.84
CHMP4AQ9BY43 Y_RNA.94-201ENST00000363068 106 ntBASIC-2.69□□□□□ -2.84
CHMP4AQ9BY43 MIR487B-201ENST00000385021 84 ntBASIC-2.69□□□□□ -2.84
Retrieved 100 of 98,524 protein–RNA pairs in 170.7 ms