Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 HLA-S-202ENST00000425174 53 ntBASIC-2.24□□□□□ -2.77
CHMP4AQ9BY43 RNU6-919P-201ENST00000516731 104 ntBASIC-2.24□□□□□ -2.77
CHMP4AQ9BY43 MIR548V-201ENST00000584165 80 ntBASIC-2.24□□□□□ -2.77
CHMP4AQ9BY43 snoMBII-202.2-201ENST00000517263 86 ntBASIC-2.25□□□□□ -2.77
CHMP4AQ9BY43 MIR5591-201ENST00000578248 65 ntBASIC-2.25□□□□□ -2.77
CHMP4AQ9BY43 MIR4770-201ENST00000579149 58 ntBASIC-2.25□□□□□ -2.77
CHMP4AQ9BY43 RNY4P27-201ENST00000363341 96 ntBASIC-2.26□□□□□ -2.77
CHMP4AQ9BY43 RNU6-698P-201ENST00000363523 107 ntBASIC-2.26□□□□□ -2.77
CHMP4AQ9BY43 RNU6-34P-201ENST00000364874 107 ntBASIC-2.26□□□□□ -2.77
CHMP4AQ9BY43 RNU6-696P-201ENST00000390834 107 ntBASIC-2.26□□□□□ -2.77
CHMP4AQ9BY43 IGLL4P-201ENST00000614590 133 ntBASIC-2.26□□□□□ -2.77
CHMP4AQ9BY43 MIR6874-201ENST00000635894 71 ntBASIC-2.26□□□□□ -2.77
CHMP4AQ9BY43 Y_RNA.282-201ENST00000364793 102 ntBASIC-2.27□□□□□ -2.77
CHMP4AQ9BY43 RNU6-215P-201ENST00000365169 102 ntBASIC-2.27□□□□□ -2.77
CHMP4AQ9BY43 RNU6-587P-201ENST00000391282 106 ntBASIC-2.27□□□□□ -2.77
CHMP4AQ9BY43 Y_RNA.109-201ENST00000363215 102 ntBASIC-2.29□□□□□ -2.78
CHMP4AQ9BY43 Y_RNA.607-201ENST00000410597 98 ntBASIC-2.29□□□□□ -2.78
CHMP4AQ9BY43 MIR8053-201ENST00000613344 75 ntBASIC-2.29□□□□□ -2.78
CHMP4AQ9BY43 RNU6-668P-201ENST00000364180 107 ntBASIC-2.3□□□□□ -2.78
CHMP4AQ9BY43 RNY1P1-201ENST00000364372 112 ntBASIC-2.31□□□□□ -2.78
CHMP4AQ9BY43 Y_RNA.426-201ENST00000384068 113 ntBASIC-2.31□□□□□ -2.78
CHMP4AQ9BY43 MIR4520-1-201ENST00000582609 70 ntBASIC-2.31□□□□□ -2.78
CHMP4AQ9BY43 U4.4-201ENST00000620626 117 ntBASIC-2.31□□□□□ -2.78
CHMP4AQ9BY43 Y_RNA.73-201ENST00000362910 113 ntBASIC-2.32□□□□□ -2.78
CHMP4AQ9BY43 RNU6-1131P-201ENST00000364955 107 ntBASIC-2.32□□□□□ -2.78
CHMP4AQ9BY43 Y_RNA.375-201ENST00000365625 101 ntBASIC-2.32□□□□□ -2.78
CHMP4AQ9BY43 Y_RNA.593-201ENST00000410292 98 ntBASIC-2.32□□□□□ -2.78
CHMP4AQ9BY43 RNU6-1262P-201ENST00000516217 96 ntBASIC-2.32□□□□□ -2.78
CHMP4AQ9BY43 MIR630-201ENST00000384957 97 ntBASIC-2.33□□□□□ -2.78
CHMP4AQ9BY43 RNU6-226P-201ENST00000363778 107 ntBASIC-2.34□□□□□ -2.78
CHMP4AQ9BY43 AL603908.1-201ENST00000406098 201 ntBASIC-2.34□□□□□ -2.78
CHMP4AQ9BY43 AC090616.4-201ENST00000448026 115 ntBASIC-2.34□□□□□ -2.78
CHMP4AQ9BY43 RNU6-315P-201ENST00000362666 107 ntBASIC-2.35□□□□□ -2.79
CHMP4AQ9BY43 SNORD113.1-201ENST00000363280 73 ntBASIC-2.35□□□□□ -2.79
CHMP4AQ9BY43 RNU6-1094P-201ENST00000362416 104 ntBASIC-2.37□□□□□ -2.79
CHMP4AQ9BY43 RNA5SP215-201ENST00000363440 122 ntBASIC-2.37□□□□□ -2.79
CHMP4AQ9BY43 SNORD45A-201ENST00000384512 84 ntBASIC-2.37□□□□□ -2.79
CHMP4AQ9BY43 RNU6-168P-201ENST00000516189 101 ntBASIC-2.37□□□□□ -2.79
CHMP4AQ9BY43 MIR664A-201ENST00000626086 82 ntBASIC-2.37□□□□□ -2.79
CHMP4AQ9BY43 SNORD113-2-201ENST00000391082 72 ntBASIC-2.38□□□□□ -2.79
CHMP4AQ9BY43 MIR5588-201ENST00000581890 63 ntBASIC-2.38□□□□□ -2.79
CHMP4AQ9BY43 RNU6-598P-201ENST00000364017 105 ntBASIC-2.39□□□□□ -2.79
CHMP4AQ9BY43 RNU6-44P-201ENST00000384045 107 ntBASIC-2.39□□□□□ -2.79
CHMP4AQ9BY43 RNU6-49P-201ENST00000384256 107 ntBASIC-2.39□□□□□ -2.79
CHMP4AQ9BY43 RNU6-789P-201ENST00000517105 102 ntBASIC-2.39□□□□□ -2.79
CHMP4AQ9BY43 Y_RNA.316-201ENST00000365118 111 ntBASIC-2.41□□□□□ -2.8
CHMP4AQ9BY43 RNU6-630P-201ENST00000391258 106 ntBASIC-2.41□□□□□ -2.8
CHMP4AQ9BY43 Y_RNA.603-201ENST00000410571 108 ntBASIC-2.41□□□□□ -2.8
CHMP4AQ9BY43 Y_RNA.684-201ENST00000516510 99 ntBASIC-2.42□□□□□ -2.8
CHMP4AQ9BY43 RNA5SP89-201ENST00000410300 108 ntBASIC-2.43□□□□□ -2.8
CHMP4AQ9BY43 U2.18-201ENST00000622185 84 ntBASIC-2.43□□□□□ -2.8
CHMP4AQ9BY43 RNA5SP173-201ENST00000364857 136 ntBASIC-2.44□□□□□ -2.8
CHMP4AQ9BY43 Y_RNA.442-201ENST00000384131 102 ntBASIC-2.45□□□□□ -2.8
CHMP4AQ9BY43 RNU6-400P-201ENST00000391173 106 ntBASIC-2.45□□□□□ -2.8
CHMP4AQ9BY43 RNU6-979P-201ENST00000383896 107 ntBASIC-2.46□□□□□ -2.8
CHMP4AQ9BY43 RNA5SP86-201ENST00000390869 98 ntBASIC-2.46□□□□□ -2.8
CHMP4AQ9BY43 RNU6-1152P-201ENST00000384576 107 ntBASIC-2.47□□□□□ -2.8
CHMP4AQ9BY43 MIR548AI-201ENST00000579940 88 ntBASIC-2.47□□□□□ -2.8
CHMP4AQ9BY43 RNU6-79P-201ENST00000362511 107 ntBASIC-2.48□□□□□ -2.81
CHMP4AQ9BY43 Y_RNA.340-201ENST00000365330 92 ntBASIC-2.48□□□□□ -2.81
CHMP4AQ9BY43 RNY4P30-201ENST00000410216 95 ntBASIC-2.48□□□□□ -2.81
CHMP4AQ9BY43 AC018880.2-201ENST00000414265 201 ntBASIC-2.48□□□□□ -2.81
CHMP4AQ9BY43 Y_RNA.232-201ENST00000364369 96 ntBASIC-2.49□□□□□ -2.81
CHMP4AQ9BY43 Y_RNA.313-201ENST00000365095 103 ntBASIC-2.49□□□□□ -2.81
CHMP4AQ9BY43 SNORD116-16-201ENST00000384533 92 ntBASIC-2.5□□□□□ -2.81
CHMP4AQ9BY43 Y_RNA.543-201ENST00000384649 107 ntBASIC-2.5□□□□□ -2.81
CHMP4AQ9BY43 Y_RNA.475-201ENST00000384345 101 ntBASIC-2.51□□□□□ -2.81
CHMP4AQ9BY43 MIR154-201ENST00000385243 84 ntBASIC-2.51□□□□□ -2.81
CHMP4AQ9BY43 RNU6-70P-201ENST00000516438 60 ntBASIC-2.51□□□□□ -2.81
CHMP4AQ9BY43 RNU6-895P-201ENST00000384125 103 ntBASIC-2.52□□□□□ -2.81
CHMP4AQ9BY43 RNU6-1241P-201ENST00000384536 107 ntBASIC-2.52□□□□□ -2.81
CHMP4AQ9BY43 RNU6-608P-201ENST00000383927 104 ntBASIC-2.53□□□□□ -2.81
CHMP4AQ9BY43 RNU6-1111P-201ENST00000391118 107 ntBASIC-2.53□□□□□ -2.81
CHMP4AQ9BY43 MIR520D-201ENST00000385002 87 ntBASIC-2.54□□□□□ -2.82
CHMP4AQ9BY43 RNU7-171P-201ENST00000459581 62 ntBASIC-2.54□□□□□ -2.82
CHMP4AQ9BY43 MIR4712-201ENST00000583750 82 ntBASIC-2.54□□□□□ -2.82
CHMP4AQ9BY43 MIR1245B-201ENST00000636115 69 ntBASIC-2.54□□□□□ -2.82
CHMP4AQ9BY43 MIR548AA1-201ENST00000384971 97 ntBASIC-2.55□□□□□ -2.82
CHMP4AQ9BY43 MIR548H1-201ENST00000408610 102 ntBASIC-2.55□□□□□ -2.82
CHMP4AQ9BY43 SNORA41B-201ENST00000384785 128 ntBASIC-2.57□□□□□ -2.82
CHMP4AQ9BY43 MIR494-201ENST00000349529 81 ntBASIC-2.58□□□□□ -2.82
CHMP4AQ9BY43 RNU6-242P-201ENST00000384359 107 ntBASIC-2.58□□□□□ -2.82
CHMP4AQ9BY43 RNU6-1267P-201ENST00000410747 107 ntBASIC-2.58□□□□□ -2.82
CHMP4AQ9BY43 RNU6-406P-201ENST00000516470 107 ntBASIC-2.58□□□□□ -2.82
CHMP4AQ9BY43 Y_RNA.291-201ENST00000364886 113 ntBASIC-2.59□□□□□ -2.82
CHMP4AQ9BY43 MIR3170-201ENST00000582699 77 ntBASIC-2.59□□□□□ -2.82
CHMP4AQ9BY43 RNU6-247P-201ENST00000362636 107 ntBASIC-2.6□□□□□ -2.83
CHMP4AQ9BY43 SNORD1B-201ENST00000363091 84 ntBASIC-2.62□□□□□ -2.83
CHMP4AQ9BY43 Y_RNA.678-201ENST00000516408 96 ntBASIC-2.62□□□□□ -2.83
CHMP4AQ9BY43 Y_RNA.175-201ENST00000363794 111 ntBASIC-2.63□□□□□ -2.83
CHMP4AQ9BY43 RNU6-995P-201ENST00000391244 107 ntBASIC-2.63□□□□□ -2.83
CHMP4AQ9BY43 MIR23C-201ENST00000579846 100 ntBASIC-2.63□□□□□ -2.83
CHMP4AQ9BY43 Y_RNA.228-201ENST00000364346 98 ntBASIC-2.65□□□□□ -2.83
CHMP4AQ9BY43 RNU6-1276P-201ENST00000365372 104 ntBASIC-2.66□□□□□ -2.84
CHMP4AQ9BY43 SNORD116-24-201ENST00000384549 92 ntBASIC-2.66□□□□□ -2.84
CHMP4AQ9BY43 MIR450A2-201ENST00000385022 100 ntBASIC-2.66□□□□□ -2.84
CHMP4AQ9BY43 RNU6-119P-201ENST00000364882 107 ntBASIC-2.67□□□□□ -2.84
CHMP4AQ9BY43 RNU6-540P-201ENST00000384622 101 ntBASIC-2.68□□□□□ -2.84
CHMP4AQ9BY43 Y_RNA.94-201ENST00000363068 106 ntBASIC-2.69□□□□□ -2.84
CHMP4AQ9BY43 MIR487B-201ENST00000385021 84 ntBASIC-2.69□□□□□ -2.84
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms