Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.9□□□□□ -2.27
NKX2-3Q8TAU0 MIR4711-201ENST00000578274 70 ntBASIC0.9□□□□□ -2.27
NKX2-3Q8TAU0 RNA5SP347-201ENST00000362445 119 ntBASIC0.89□□□□□ -2.27
NKX2-3Q8TAU0 SNORD114-2-201ENST00000363953 78 ntBASIC0.89□□□□□ -2.27
NKX2-3Q8TAU0 MIR508-201ENST00000384857 115 ntBASIC0.89□□□□□ -2.27
NKX2-3Q8TAU0 MIR520D-201ENST00000385002 87 ntBASIC0.89□□□□□ -2.27
NKX2-3Q8TAU0 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.89□□□□□ -2.27
NKX2-3Q8TAU0 RNA5SP331-201ENST00000364986 107 ntBASIC0.88□□□□□ -2.27
NKX2-3Q8TAU0 RNU6-133P-201ENST00000383989 107 ntBASIC0.88□□□□□ -2.27
NKX2-3Q8TAU0 MIR548Q-201ENST00000408404 100 ntBASIC0.88□□□□□ -2.27
NKX2-3Q8TAU0 MIR6866-201ENST00000638146 69 ntBASIC0.88□□□□□ -2.27
NKX2-3Q8TAU0 MIR1197-201ENST00000408818 88 ntBASIC0.87□□□□□ -2.27
NKX2-3Q8TAU0 RNA5SP193-201ENST00000410353 107 ntBASIC0.87□□□□□ -2.27
NKX2-3Q8TAU0 MIR6854-201ENST00000614935 69 ntBASIC0.87□□□□□ -2.27
NKX2-3Q8TAU0 RNU6-455P-201ENST00000384681 107 ntBASIC0.86□□□□□ -2.27
NKX2-3Q8TAU0 CR383656.4-201ENST00000546909 122 ntBASIC0.86□□□□□ -2.27
NKX2-3Q8TAU0 RNU6-1233P-201ENST00000362922 102 ntBASIC0.85□□□□□ -2.27
NKX2-3Q8TAU0 MIR146A-201ENST00000385201 99 ntBASIC0.85□□□□□ -2.27
NKX2-3Q8TAU0 RNU6-176P-201ENST00000517196 105 ntBASIC0.85□□□□□ -2.27
NKX2-3Q8TAU0 RNA5SP499-201ENST00000363982 119 ntBASIC0.84□□□□□ -2.27
NKX2-3Q8TAU0 RNU6-127P-201ENST00000390897 107 ntBASIC0.84□□□□□ -2.27
NKX2-3Q8TAU0 RNY1P9-201ENST00000532431 109 ntBASIC0.84□□□□□ -2.27
NKX2-3Q8TAU0 MIR8068-201ENST00000618032 68 ntBASIC0.84□□□□□ -2.27
NKX2-3Q8TAU0 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.83□□□□□ -2.28
NKX2-3Q8TAU0 MIR5704-201ENST00000584029 77 ntBASIC0.83□□□□□ -2.28
NKX2-3Q8TAU0 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
NKX2-3Q8TAU0 MIR148A-201ENST00000362215 68 ntBASIC0.82□□□□□ -2.28
NKX2-3Q8TAU0 MIR124-2-201ENST00000385081 109 ntBASIC0.82□□□□□ -2.28
NKX2-3Q8TAU0 RNA5SP169-201ENST00000517268 117 ntBASIC0.82□□□□□ -2.28
NKX2-3Q8TAU0 RNU6-300P-201ENST00000459080 104 ntBASIC0.81□□□□□ -2.28
NKX2-3Q8TAU0 RNU6-180P-201ENST00000516697 61 ntBASIC0.81□□□□□ -2.28
NKX2-3Q8TAU0 MIR6514-201ENST00000622549 70 ntBASIC0.81□□□□□ -2.28
NKX2-3Q8TAU0 SNORA17.4-201ENST00000391287 132 ntBASIC0.78□□□□□ -2.28
NKX2-3Q8TAU0 AC114755.3-201ENST00000481111 251 ntBASIC0.78□□□□□ -2.28
NKX2-3Q8TAU0 MIR4636-201ENST00000582271 80 ntBASIC0.78□□□□□ -2.28
NKX2-3Q8TAU0 MIR5087-201ENST00000635826 76 ntBASIC0.78□□□□□ -2.28
NKX2-3Q8TAU0 RNA5SP67-201ENST00000516422 131 ntBASIC0.76□□□□□ -2.29
NKX2-3Q8TAU0 MIR4723-201ENST00000585070 81 ntBASIC0.76□□□□□ -2.29
NKX2-3Q8TAU0 RNU6-485P-201ENST00000363475 107 ntBASIC0.75□□□□□ -2.29
NKX2-3Q8TAU0 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
NKX2-3Q8TAU0 MIR103A1-201ENST00000362165 78 ntBASIC0.74□□□□□ -2.29
NKX2-3Q8TAU0 MIR202-201ENST00000362219 110 ntBASIC0.74□□□□□ -2.29
NKX2-3Q8TAU0 RNU6-901P-201ENST00000384593 106 ntBASIC0.74□□□□□ -2.29
NKX2-3Q8TAU0 SNORD56B-201ENST00000384713 71 ntBASIC0.74□□□□□ -2.29
NKX2-3Q8TAU0 SNORD111B-201ENST00000408587 80 ntBASIC0.74□□□□□ -2.29
NKX2-3Q8TAU0 SNORA62.5-201ENST00000516634 120 ntBASIC0.74□□□□□ -2.29
NKX2-3Q8TAU0 MIR892B-201ENST00000401279 77 ntBASIC0.73□□□□□ -2.29
NKX2-3Q8TAU0 RNU6-608P-201ENST00000383927 104 ntBASIC0.72□□□□□ -2.29
NKX2-3Q8TAU0 MIR548H2-201ENST00000408874 88 ntBASIC0.72□□□□□ -2.29
NKX2-3Q8TAU0 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.72□□□□□ -2.29
NKX2-3Q8TAU0 AP002795.1-201ENST00000534879 84 ntBASIC0.72□□□□□ -2.29
NKX2-3Q8TAU0 MIR5589-201ENST00000579442 60 ntBASIC0.72□□□□□ -2.29
NKX2-3Q8TAU0 RNU6-815P-201ENST00000384080 113 ntBASIC0.71□□□□□ -2.3
NKX2-3Q8TAU0 SNORA68.3-201ENST00000515906 83 ntBASIC0.71□□□□□ -2.3
NKX2-3Q8TAU0 MIR5683-201ENST00000636514 76 ntBASIC0.71□□□□□ -2.3
NKX2-3Q8TAU0 MIR643-201ENST00000385267 97 ntBASIC0.7□□□□□ -2.3
NKX2-3Q8TAU0 SNORA26.4-201ENST00000391188 123 ntBASIC0.7□□□□□ -2.3
NKX2-3Q8TAU0 RNA5SP163-201ENST00000410304 99 ntBASIC0.7□□□□□ -2.3
NKX2-3Q8TAU0 RNY3P8-201ENST00000411366 126 ntBASIC0.7□□□□□ -2.3
NKX2-3Q8TAU0 MIRLET7D-201ENST00000362263 87 ntBASIC0.69□□□□□ -2.3
NKX2-3Q8TAU0 AL353691.2-201ENST00000443795 59 ntBASIC0.69□□□□□ -2.3
NKX2-3Q8TAU0 AC069113.3-201ENST00000521019 150 ntBASIC0.69□□□□□ -2.3
NKX2-3Q8TAU0 MIR4743-201ENST00000584576 69 ntBASIC0.69□□□□□ -2.3
NKX2-3Q8TAU0 SNORD115-33-201ENST00000363723 82 ntBASIC0.68□□□□□ -2.3
NKX2-3Q8TAU0 SNORD74.6-201ENST00000364796 70 ntBASIC0.68□□□□□ -2.3
NKX2-3Q8TAU0 SNORD60-201ENST00000383903 83 ntBASIC0.68□□□□□ -2.3
NKX2-3Q8TAU0 MIR2909-201ENST00000617113 69 ntBASIC0.68□□□□□ -2.3
NKX2-3Q8TAU0 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.67□□□□□ -2.3
NKX2-3Q8TAU0 MIR4280-201ENST00000582178 76 ntBASIC0.67□□□□□ -2.3
NKX2-3Q8TAU0 RNA5SP368-201ENST00000364298 116 ntBASIC0.66□□□□□ -2.3
NKX2-3Q8TAU0 RNA5SP63-201ENST00000391225 112 ntBASIC0.65□□□□□ -2.31
NKX2-3Q8TAU0 RNA5SP266-201ENST00000410273 108 ntBASIC0.65□□□□□ -2.31
NKX2-3Q8TAU0 AC244250.2-201ENST00000418731 148 ntBASIC0.65□□□□□ -2.31
NKX2-3Q8TAU0 Z95118.1-201ENST00000421372 247 ntBASIC0.65□□□□□ -2.31
NKX2-3Q8TAU0 MIR6759-201ENST00000638110 65 ntBASIC0.65□□□□□ -2.31
NKX2-3Q8TAU0 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.65□□□□□ -2.31
NKX2-3Q8TAU0 MIR409-201ENST00000362237 79 ntBASIC0.63□□□□□ -2.31
NKX2-3Q8TAU0 SNORD114-15-201ENST00000364687 72 ntBASIC0.63□□□□□ -2.31
NKX2-3Q8TAU0 Y_RNA.457-201ENST00000384237 111 ntBASIC0.63□□□□□ -2.31
NKX2-3Q8TAU0 MIR548N-201ENST00000408742 75 ntBASIC0.63□□□□□ -2.31
NKX2-3Q8TAU0 RNA5SP25-201ENST00000410815 110 ntBASIC0.63□□□□□ -2.31
NKX2-3Q8TAU0 AC090625.1-201ENST00000357130 210 ntBASIC0.62□□□□□ -2.31
NKX2-3Q8TAU0 MIR655-201ENST00000362159 97 ntBASIC0.62□□□□□ -2.31
NKX2-3Q8TAU0 Y_RNA.185-201ENST00000363894 100 ntBASIC0.62□□□□□ -2.31
NKX2-3Q8TAU0 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.62□□□□□ -2.31
NKX2-3Q8TAU0 MIR4802-201ENST00000581881 80 ntBASIC0.61□□□□□ -2.31
NKX2-3Q8TAU0 MIR92A1-201ENST00000385233 78 ntBASIC0.6□□□□□ -2.31
NKX2-3Q8TAU0 AC114737.2-201ENST00000421583 173 ntBASIC0.6□□□□□ -2.31
NKX2-3Q8TAU0 RNU7-165P-201ENST00000458864 60 ntBASIC0.6□□□□□ -2.31
NKX2-3Q8TAU0 SNORD18.2-201ENST00000459604 70 ntBASIC0.6□□□□□ -2.31
NKX2-3Q8TAU0 SNORA50A-201ENST00000384225 134 ntBASIC0.59□□□□□ -2.31
NKX2-3Q8TAU0 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.59□□□□□ -2.31
NKX2-3Q8TAU0 RNU6-758P-201ENST00000516292 89 ntBASIC0.59□□□□□ -2.31
NKX2-3Q8TAU0 IGLVI-20-201ENST00000519296 130 ntBASIC0.59□□□□□ -2.31
NKX2-3Q8TAU0 MIR6851-201ENST00000617060 67 ntBASIC0.59□□□□□ -2.31
NKX2-3Q8TAU0 MIR610-201ENST00000385139 96 ntBASIC0.58□□□□□ -2.32
NKX2-3Q8TAU0 AC023932.2-201ENST00000603176 175 ntBASIC0.58□□□□□ -2.32
NKX2-3Q8TAU0 MIR4315-1-201ENST00000636800 73 ntBASIC0.58□□□□□ -2.32
NKX2-3Q8TAU0 MIR4315-2-201ENST00000640925 73 ntBASIC0.58□□□□□ -2.32
NKX2-3Q8TAU0 RNU6-1327P-201ENST00000365302 105 ntBASIC0.57□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 200.1 ms