Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 MIR96-201ENST00000362288 78 ntBASIC1.92□□□□□ -2.1
MSH5O43196 SNORD114-26-201ENST00000363543 72 ntBASIC1.92□□□□□ -2.1
MSH5O43196 RPS29P23-201ENST00000458635 123 ntBASIC1.92□□□□□ -2.1
MSH5O43196 MIR548J-201ENST00000408833 112 ntBASIC1.91□□□□□ -2.1
MSH5O43196 AC022709.1-201ENST00000615967 87 ntBASIC1.91□□□□□ -2.1
MSH5O43196 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.11
MSH5O43196 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
MSH5O43196 RNU6-345P-201ENST00000517001 107 ntBASIC1.89□□□□□ -2.11
MSH5O43196 MIR1304-201ENST00000408243 91 ntBASIC1.88□□□□□ -2.11
MSH5O43196 Y_RNA.781-201ENST00000620301 103 ntBASIC1.88□□□□□ -2.11
MSH5O43196 SNORD114-27-201ENST00000363766 70 ntBASIC1.87□□□□□ -2.11
MSH5O43196 MIR150-201ENST00000385048 84 ntBASIC1.87□□□□□ -2.11
MSH5O43196 RPS29P1-201ENST00000465274 159 ntBASIC1.87□□□□□ -2.11
MSH5O43196 AC068338.1-201ENST00000565567 176 ntBASIC1.87□□□□□ -2.11
MSH5O43196 Y_RNA.434-201ENST00000384090 100 ntBASIC1.86□□□□□ -2.11
MSH5O43196 SNORD114-17-201ENST00000364699 75 ntBASIC1.85□□□□□ -2.11
MSH5O43196 RNU6ATAC22P-201ENST00000516794 89 ntBASIC1.85□□□□□ -2.11
MSH5O43196 PVT1_3.1-201ENST00000620853 95 ntBASIC1.85□□□□□ -2.11
MSH5O43196 RNU6-1324P-201ENST00000384222 107 ntBASIC1.84□□□□□ -2.11
MSH5O43196 MIR4280-201ENST00000582178 76 ntBASIC1.84□□□□□ -2.11
MSH5O43196 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.82□□□□□ -2.12
MSH5O43196 SNORD38.3-201ENST00000516599 73 ntBASIC1.82□□□□□ -2.12
MSH5O43196 CR383656.4-201ENST00000546909 122 ntBASIC1.81□□□□□ -2.12
MSH5O43196 SNORD26-201ENST00000384147 75 ntBASIC1.8□□□□□ -2.12
MSH5O43196 MIR598-201ENST00000384868 97 ntBASIC1.8□□□□□ -2.12
MSH5O43196 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
MSH5O43196 AL590095.2-201ENST00000604136 117 ntBASIC1.78□□□□□ -2.12
MSH5O43196 Y_RNA.59-201ENST00000362828 102 ntBASIC1.77□□□□□ -2.13
MSH5O43196 RNU6-1043P-201ENST00000410355 99 ntBASIC1.76□□□□□ -2.13
MSH5O43196 MIR26B-201ENST00000362251 77 ntBASIC1.75□□□□□ -2.13
MSH5O43196 SNORD74.6-201ENST00000364796 70 ntBASIC1.75□□□□□ -2.13
MSH5O43196 RNA5SP163-201ENST00000410304 99 ntBASIC1.75□□□□□ -2.13
MSH5O43196 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.75□□□□□ -2.13
MSH5O43196 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.74□□□□□ -2.13
MSH5O43196 MIR6788-201ENST00000618842 66 ntBASIC1.73□□□□□ -2.13
MSH5O43196 RNU6-422P-201ENST00000384632 107 ntBASIC1.72□□□□□ -2.13
MSH5O43196 AC090625.1-201ENST00000357130 210 ntBASIC1.71□□□□□ -2.14
MSH5O43196 MIR148A-201ENST00000362215 68 ntBASIC1.71□□□□□ -2.14
MSH5O43196 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.71□□□□□ -2.14
MSH5O43196 AC244250.2-201ENST00000418731 148 ntBASIC1.71□□□□□ -2.14
MSH5O43196 RNU6-863P-201ENST00000515989 104 ntBASIC1.71□□□□□ -2.14
MSH5O43196 Y_RNA.374-201ENST00000365606 101 ntBASIC1.7□□□□□ -2.14
MSH5O43196 SNORD22.1-201ENST00000516331 125 ntBASIC1.7□□□□□ -2.14
MSH5O43196 MIR6851-201ENST00000617060 67 ntBASIC1.7□□□□□ -2.14
MSH5O43196 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC1.69□□□□□ -2.14
MSH5O43196 RNU6-79P-201ENST00000362511 107 ntBASIC1.69□□□□□ -2.14
MSH5O43196 RNA5SP436-201ENST00000516020 115 ntBASIC1.68□□□□□ -2.14
MSH5O43196 SNORD44.1-201ENST00000363202 61 ntBASIC1.65□□□□□ -2.15
MSH5O43196 RNU6-892P-201ENST00000410335 99 ntBASIC1.65□□□□□ -2.15
MSH5O43196 RNU6-955P-201ENST00000410497 104 ntBASIC1.65□□□□□ -2.15
MSH5O43196 AL500527.2-201ENST00000454105 95 ntBASIC1.64□□□□□ -2.15
MSH5O43196 RNU6-180P-201ENST00000516697 61 ntBASIC1.64□□□□□ -2.15
MSH5O43196 RNA5SP26-201ENST00000362406 119 ntBASIC1.63□□□□□ -2.15
MSH5O43196 MIR4645-201ENST00000583158 77 ntBASIC1.63□□□□□ -2.15
MSH5O43196 RNU6-627P-201ENST00000364032 102 ntBASIC1.62□□□□□ -2.15
MSH5O43196 MIR3660-201ENST00000584845 100 ntBASIC1.62□□□□□ -2.15
MSH5O43196 MIR6767-201ENST00000637302 66 ntBASIC1.61□□□□□ -2.15
MSH5O43196 MIR518B-201ENST00000385127 83 ntBASIC1.6□□□□□ -2.15
MSH5O43196 MIR608-201ENST00000384820 100 ntBASIC1.59□□□□□ -2.15
MSH5O43196 MIR892B-201ENST00000401279 77 ntBASIC1.59□□□□□ -2.15
MSH5O43196 SNORD75.1-201ENST00000408373 60 ntBASIC1.59□□□□□ -2.15
MSH5O43196 MIR4295-201ENST00000585286 85 ntBASIC1.59□□□□□ -2.15
MSH5O43196 MIR1285-1-201ENST00000408593 84 ntBASIC1.57□□□□□ -2.16
MSH5O43196 RNU6-854P-201ENST00000364036 107 ntBASIC1.56□□□□□ -2.16
MSH5O43196 AP000533.3-201ENST00000447704 118 ntBASIC1.56□□□□□ -2.16
MSH5O43196 MIR4661-201ENST00000582720 75 ntBASIC1.56□□□□□ -2.16
MSH5O43196 RNU6-939P-201ENST00000384634 107 ntBASIC1.55□□□□□ -2.16
MSH5O43196 Y_RNA.30-201ENST00000362572 97 ntBASIC1.53□□□□□ -2.16
MSH5O43196 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.53□□□□□ -2.16
MSH5O43196 MIR548H2-201ENST00000408874 88 ntBASIC1.52□□□□□ -2.17
MSH5O43196 AC018880.2-201ENST00000414265 201 ntBASIC1.52□□□□□ -2.17
MSH5O43196 SNORA13-201ENST00000458790 133 ntBASIC1.52□□□□□ -2.17
MSH5O43196 RN7SL793P-201ENST00000583259 296 ntBASIC1.52□□□□□ -2.17
MSH5O43196 MIR655-201ENST00000362159 97 ntBASIC1.5□□□□□ -2.17
MSH5O43196 MIR103A1-201ENST00000362165 78 ntBASIC1.5□□□□□ -2.17
MSH5O43196 SNORA32.1-201ENST00000364514 115 ntBASIC1.5□□□□□ -2.17
MSH5O43196 MIR216A-201ENST00000385063 110 ntBASIC1.5□□□□□ -2.17
MSH5O43196 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.5□□□□□ -2.17
MSH5O43196 RNU6-815P-201ENST00000384080 113 ntBASIC1.49□□□□□ -2.17
MSH5O43196 MIR5000-201ENST00000577717 103 ntBASIC1.48□□□□□ -2.17
MSH5O43196 RNU6-110P-201ENST00000384508 104 ntBASIC1.46□□□□□ -2.18
MSH5O43196 MIR548H1-201ENST00000408610 102 ntBASIC1.45□□□□□ -2.18
MSH5O43196 Y_RNA.349-201ENST00000365406 102 ntBASIC1.44□□□□□ -2.18
MSH5O43196 SNORD19B.1-201ENST00000630615 80 ntBASIC1.43□□□□□ -2.18
MSH5O43196 MIR3179-1-201ENST00000578940 84 ntBASIC1.42□□□□□ -2.18
MSH5O43196 MIR3179-2-201ENST00000579107 84 ntBASIC1.42□□□□□ -2.18
MSH5O43196 MIR3179-3-201ENST00000579566 84 ntBASIC1.42□□□□□ -2.18
MSH5O43196 AC211469.2-201ENST00000605461 205 ntBASIC1.42□□□□□ -2.18
MSH5O43196 MIR3179-4-201ENST00000617599 84 ntBASIC1.42□□□□□ -2.18
MSH5O43196 MIR146A-201ENST00000385201 99 ntBASIC1.4□□□□□ -2.19
MSH5O43196 Y_RNA.189-201ENST00000363959 112 ntBASIC1.39□□□□□ -2.19
MSH5O43196 SNORD113-3-201ENST00000364830 72 ntBASIC1.39□□□□□ -2.19
MSH5O43196 AC103810.9-201ENST00000606688 112 ntBASIC1.38□□□□□ -2.19
MSH5O43196 Y_RNA.63-201ENST00000362841 102 ntBASIC1.37□□□□□ -2.19
MSH5O43196 CYP3A137P-201ENST00000562436 69 ntBASIC1.37□□□□□ -2.19
MSH5O43196 MIR373-201ENST00000362273 69 ntBASIC1.36□□□□□ -2.19
MSH5O43196 MIR3973-201ENST00000579824 107 ntBASIC1.35□□□□□ -2.19
MSH5O43196 MIR593-201ENST00000384856 100 ntBASIC1.34□□□□□ -2.19
MSH5O43196 Z95118.1-201ENST00000421372 247 ntBASIC1.34□□□□□ -2.19
MSH5O43196 SNORA68.3-201ENST00000515906 83 ntBASIC1.34□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 209.9 ms