Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 SCARNA11.2-201ENST00000517183 154 ntBASIC0.53□□□□□ -2.32
UBE3DQ7Z6J8 MIR151B-201ENST00000584249 96 ntBASIC0.53□□□□□ -2.32
UBE3DQ7Z6J8 RN7SL660P-201ENST00000614852 299 ntBASIC0.53□□□□□ -2.32
UBE3DQ7Z6J8 RNU6-502P-201ENST00000362419 108 ntBASIC0.52□□□□□ -2.33
UBE3DQ7Z6J8 Y_RNA.224-201ENST00000364308 111 ntBASIC0.52□□□□□ -2.33
UBE3DQ7Z6J8 Y_RNA.226-201ENST00000364337 114 ntBASIC0.52□□□□□ -2.33
UBE3DQ7Z6J8 MIR92A1-201ENST00000385233 78 ntBASIC0.52□□□□□ -2.33
UBE3DQ7Z6J8 MIR466-201ENST00000580653 84 ntBASIC0.52□□□□□ -2.33
UBE3DQ7Z6J8 SNORD60.1-201ENST00000362451 73 ntBASIC0.51□□□□□ -2.33
UBE3DQ7Z6J8 AC090617.8-201ENST00000623339 167 ntBASIC0.51□□□□□ -2.33
UBE3DQ7Z6J8 MIR103A1-201ENST00000362165 78 ntBASIC0.5□□□□□ -2.33
UBE3DQ7Z6J8 Y_RNA.74-201ENST00000362911 99 ntBASIC0.5□□□□□ -2.33
UBE3DQ7Z6J8 RNU6-1327P-201ENST00000365302 105 ntBASIC0.5□□□□□ -2.33
UBE3DQ7Z6J8 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.5□□□□□ -2.33
UBE3DQ7Z6J8 RNA5SP98-201ENST00000363158 137 ntBASIC0.49□□□□□ -2.33
UBE3DQ7Z6J8 RNU6-127P-201ENST00000390897 107 ntBASIC0.49□□□□□ -2.33
UBE3DQ7Z6J8 MIR892B-201ENST00000401279 77 ntBASIC0.49□□□□□ -2.33
UBE3DQ7Z6J8 MIR1287-201ENST00000408492 90 ntBASIC0.49□□□□□ -2.33
UBE3DQ7Z6J8 AC069113.3-201ENST00000521019 150 ntBASIC0.49□□□□□ -2.33
UBE3DQ7Z6J8 RNA5SP62-201ENST00000363457 110 ntBASIC0.48□□□□□ -2.33
UBE3DQ7Z6J8 AC108740.1-201ENST00000498629 225 ntBASIC0.48□□□□□ -2.33
UBE3DQ7Z6J8 MIR3938-201ENST00000582157 103 ntBASIC0.48□□□□□ -2.33
UBE3DQ7Z6J8 MIR519A2-201ENST00000384990 87 ntBASIC0.47□□□□□ -2.33
UBE3DQ7Z6J8 RNU6ATAC29P-201ENST00000408088 125 ntBASIC0.47□□□□□ -2.33
UBE3DQ7Z6J8 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.47□□□□□ -2.33
UBE3DQ7Z6J8 AC079150.2-201ENST00000443733 78 ntBASIC0.47□□□□□ -2.33
UBE3DQ7Z6J8 RNU6-1223P-201ENST00000517124 104 ntBASIC0.47□□□□□ -2.33
UBE3DQ7Z6J8 MIR4743-201ENST00000584576 69 ntBASIC0.47□□□□□ -2.33
UBE3DQ7Z6J8 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.45□□□□□ -2.34
UBE3DQ7Z6J8 RNU6-815P-201ENST00000384080 113 ntBASIC0.45□□□□□ -2.34
UBE3DQ7Z6J8 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.45□□□□□ -2.34
UBE3DQ7Z6J8 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC0.45□□□□□ -2.34
UBE3DQ7Z6J8 MIR429-201ENST00000362106 83 ntBASIC0.44□□□□□ -2.34
UBE3DQ7Z6J8 MIR148A-201ENST00000362215 68 ntBASIC0.44□□□□□ -2.34
UBE3DQ7Z6J8 Y_RNA.325-201ENST00000365171 122 ntBASIC0.44□□□□□ -2.34
UBE3DQ7Z6J8 RNA5SP247-201ENST00000411181 105 ntBASIC0.44□□□□□ -2.34
UBE3DQ7Z6J8 RNA5SP436-201ENST00000516020 115 ntBASIC0.44□□□□□ -2.34
UBE3DQ7Z6J8 CR383656.4-201ENST00000546909 122 ntBASIC0.44□□□□□ -2.34
UBE3DQ7Z6J8 MIR4315-1-201ENST00000636800 73 ntBASIC0.44□□□□□ -2.34
UBE3DQ7Z6J8 MIR4315-2-201ENST00000640925 73 ntBASIC0.44□□□□□ -2.34
UBE3DQ7Z6J8 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.44□□□□□ -2.34
UBE3DQ7Z6J8 RNA5SP347-201ENST00000362445 119 ntBASIC0.43□□□□□ -2.34
UBE3DQ7Z6J8 SNORD116-16-201ENST00000384533 92 ntBASIC0.43□□□□□ -2.34
UBE3DQ7Z6J8 SNORD115-23-201ENST00000364461 82 ntBASIC0.42□□□□□ -2.34
UBE3DQ7Z6J8 MIR633-201ENST00000384821 98 ntBASIC0.42□□□□□ -2.34
UBE3DQ7Z6J8 MIR6513-201ENST00000621188 64 ntBASIC0.42□□□□□ -2.34
UBE3DQ7Z6J8 RNU6-1079P-201ENST00000362861 110 ntBASIC0.41□□□□□ -2.34
UBE3DQ7Z6J8 RNU6-520P-201ENST00000384717 104 ntBASIC0.41□□□□□ -2.34
UBE3DQ7Z6J8 MTND4LP19-201ENST00000403051 166 ntBASIC0.41□□□□□ -2.34
UBE3DQ7Z6J8 AC114737.2-201ENST00000421583 173 ntBASIC0.41□□□□□ -2.34
UBE3DQ7Z6J8 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.41□□□□□ -2.34
UBE3DQ7Z6J8 AC022709.1-201ENST00000615967 87 ntBASIC0.41□□□□□ -2.34
UBE3DQ7Z6J8 RNA5SP193-201ENST00000410353 107 ntBASIC0.4□□□□□ -2.35
UBE3DQ7Z6J8 AP000676.1-201ENST00000533307 52 ntBASIC0.4□□□□□ -2.35
UBE3DQ7Z6J8 Y_RNA.282-201ENST00000364793 102 ntBASIC0.39□□□□□ -2.35
UBE3DQ7Z6J8 MIR527-201ENST00000385244 85 ntBASIC0.39□□□□□ -2.35
UBE3DQ7Z6J8 RNA5SP220-201ENST00000516298 104 ntBASIC0.39□□□□□ -2.35
UBE3DQ7Z6J8 RNU6-180P-201ENST00000516697 61 ntBASIC0.39□□□□□ -2.35
UBE3DQ7Z6J8 RNU6-829P-201ENST00000363700 112 ntBASIC0.38□□□□□ -2.35
UBE3DQ7Z6J8 SNORA41B-201ENST00000384785 128 ntBASIC0.38□□□□□ -2.35
UBE3DQ7Z6J8 MIR610-201ENST00000385139 96 ntBASIC0.38□□□□□ -2.35
UBE3DQ7Z6J8 RNU6-1246P-201ENST00000391064 107 ntBASIC0.38□□□□□ -2.35
UBE3DQ7Z6J8 RNU7-119P-201ENST00000459279 63 ntBASIC0.38□□□□□ -2.35
UBE3DQ7Z6J8 MIR4711-201ENST00000578274 70 ntBASIC0.38□□□□□ -2.35
UBE3DQ7Z6J8 MIR6514-201ENST00000622549 70 ntBASIC0.38□□□□□ -2.35
UBE3DQ7Z6J8 snoR1.1-201ENST00000628177 80 ntBASIC0.38□□□□□ -2.35
UBE3DQ7Z6J8 SNORA42.1-201ENST00000363515 137 ntBASIC0.37□□□□□ -2.35
UBE3DQ7Z6J8 MIR936-201ENST00000401264 98 ntBASIC0.37□□□□□ -2.35
UBE3DQ7Z6J8 MIR643-201ENST00000385267 97 ntBASIC0.36□□□□□ -2.35
UBE3DQ7Z6J8 RNU7-55P-201ENST00000459426 62 ntBASIC0.36□□□□□ -2.35
UBE3DQ7Z6J8 AL353803.5-201ENST00000599815 141 ntBASIC0.36□□□□□ -2.35
UBE3DQ7Z6J8 RNU6-900P-201ENST00000384498 102 ntBASIC0.35□□□□□ -2.35
UBE3DQ7Z6J8 RNU6-246P-201ENST00000384702 107 ntBASIC0.35□□□□□ -2.35
UBE3DQ7Z6J8 RNU6-973P-201ENST00000364690 107 ntBASIC0.34□□□□□ -2.36
UBE3DQ7Z6J8 SNORA62.4-201ENST00000365504 151 ntBASIC0.34□□□□□ -2.36
UBE3DQ7Z6J8 RNU6-42P-201ENST00000384165 107 ntBASIC0.34□□□□□ -2.36
UBE3DQ7Z6J8 RNU6-614P-201ENST00000384369 107 ntBASIC0.34□□□□□ -2.36
UBE3DQ7Z6J8 MIR548H2-201ENST00000408874 88 ntBASIC0.34□□□□□ -2.36
UBE3DQ7Z6J8 MIR4432-201ENST00000581823 84 ntBASIC0.34□□□□□ -2.36
UBE3DQ7Z6J8 U6.59-201ENST00000615686 107 ntBASIC0.34□□□□□ -2.36
UBE3DQ7Z6J8 MIR6734-201ENST00000621166 68 ntBASIC0.34□□□□□ -2.36
UBE3DQ7Z6J8 RNU6-987P-201ENST00000384759 104 ntBASIC0.33□□□□□ -2.36
UBE3DQ7Z6J8 RNA5SP163-201ENST00000410304 99 ntBASIC0.33□□□□□ -2.36
UBE3DQ7Z6J8 RNA5SP134-201ENST00000516492 96 ntBASIC0.33□□□□□ -2.36
UBE3DQ7Z6J8 RNA5SP325-201ENST00000363756 130 ntBASIC0.32□□□□□ -2.36
UBE3DQ7Z6J8 Y_RNA.236-201ENST00000364427 111 ntBASIC0.32□□□□□ -2.36
UBE3DQ7Z6J8 MIR5087-201ENST00000635826 76 ntBASIC0.32□□□□□ -2.36
UBE3DQ7Z6J8 SNORA50A-201ENST00000384225 134 ntBASIC0.31□□□□□ -2.36
UBE3DQ7Z6J8 RNU6-1133P-201ENST00000410963 100 ntBASIC0.31□□□□□ -2.36
UBE3DQ7Z6J8 AL391099.1-201ENST00000624635 187 ntBASIC0.31□□□□□ -2.36
UBE3DQ7Z6J8 RNU6-446P-201ENST00000362827 106 ntBASIC0.29□□□□□ -2.36
UBE3DQ7Z6J8 RNU6-1184P-201ENST00000384588 108 ntBASIC0.29□□□□□ -2.36
UBE3DQ7Z6J8 RNU4-37P-201ENST00000410214 84 ntBASIC0.29□□□□□ -2.36
UBE3DQ7Z6J8 RNU7-165P-201ENST00000458864 60 ntBASIC0.29□□□□□ -2.36
UBE3DQ7Z6J8 RNU7-159P-201ENST00000459284 62 ntBASIC0.29□□□□□ -2.36
UBE3DQ7Z6J8 RNU6-231P-201ENST00000517122 103 ntBASIC0.29□□□□□ -2.36
UBE3DQ7Z6J8 Y_RNA.355-201ENST00000365462 98 ntBASIC0.28□□□□□ -2.36
UBE3DQ7Z6J8 RNU6-458P-201ENST00000384179 107 ntBASIC0.28□□□□□ -2.36
UBE3DQ7Z6J8 AC096531.1-201ENST00000419107 107 ntBASIC0.28□□□□□ -2.36
UBE3DQ7Z6J8 U6.58-201ENST00000613107 107 ntBASIC0.28□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 266.5 ms