Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 RNU6-848P-201ENST00000515948 107 ntBASIC0.39□□□□□ -2.35
COL4A4P53420 RNU6-617P-201ENST00000516147 107 ntBASIC0.39□□□□□ -2.35
COL4A4P53420 RNU6-473P-201ENST00000516164 107 ntBASIC0.39□□□□□ -2.35
COL4A4P53420 RNU6-1049P-201ENST00000516414 107 ntBASIC0.39□□□□□ -2.35
COL4A4P53420 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.39□□□□□ -2.35
COL4A4P53420 Y_RNA.125-201ENST00000363371 111 ntBASIC0.38□□□□□ -2.35
COL4A4P53420 RNU6-645P-201ENST00000364649 106 ntBASIC0.38□□□□□ -2.35
COL4A4P53420 RNU4-45P-201ENST00000365469 141 ntBASIC0.38□□□□□ -2.35
COL4A4P53420 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC0.38□□□□□ -2.35
COL4A4P53420 HMGN2P22-201ENST00000427588 175 ntBASIC0.38□□□□□ -2.35
COL4A4P53420 RNA5SP268-201ENST00000516828 124 ntBASIC0.38□□□□□ -2.35
COL4A4P53420 SNORD118-201ENST00000363593 134 ntBASIC0.37□□□□□ -2.35
COL4A4P53420 RNU6-990P-201ENST00000364385 104 ntBASIC0.37□□□□□ -2.35
COL4A4P53420 MIR516B1-201ENST00000385211 90 ntBASIC0.37□□□□□ -2.35
COL4A4P53420 RNU6-604P-201ENST00000390917 100 ntBASIC0.37□□□□□ -2.35
COL4A4P53420 SNORD113-2-201ENST00000391082 72 ntBASIC0.37□□□□□ -2.35
COL4A4P53420 RNA5SP222-201ENST00000411039 105 ntBASIC0.37□□□□□ -2.35
COL4A4P53420 AC006210.1-201ENST00000424882 111 ntBASIC0.37□□□□□ -2.35
COL4A4P53420 RNA5SP484-201ENST00000458857 111 ntBASIC0.37□□□□□ -2.35
COL4A4P53420 PSMC1P5-201ENST00000512850 177 ntBASIC0.37□□□□□ -2.35
COL4A4P53420 AL353765.1-201ENST00000605514 183 ntBASIC0.37□□□□□ -2.35
COL4A4P53420 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.37□□□□□ -2.35
COL4A4P53420 RNU6-698P-201ENST00000363523 107 ntBASIC0.37□□□□□ -2.35
COL4A4P53420 RNU6-34P-201ENST00000364874 107 ntBASIC0.37□□□□□ -2.35
COL4A4P53420 Y_RNA.423-201ENST00000384057 113 ntBASIC0.37□□□□□ -2.35
COL4A4P53420 RNA5SP94-201ENST00000516917 108 ntBASIC0.37□□□□□ -2.35
COL4A4P53420 MIR4493-201ENST00000584016 73 ntBASIC0.37□□□□□ -2.35
COL4A4P53420 MIR548V-201ENST00000584165 80 ntBASIC0.37□□□□□ -2.35
COL4A4P53420 MIR6755-201ENST00000619993 66 ntBASIC0.37□□□□□ -2.35
COL4A4P53420 U4.4-201ENST00000620626 117 ntBASIC0.36□□□□□ -2.35
COL4A4P53420 MIR519A2-201ENST00000384990 87 ntBASIC0.35□□□□□ -2.35
COL4A4P53420 RNU6-337P-201ENST00000391243 106 ntBASIC0.35□□□□□ -2.35
COL4A4P53420 RNU6-92P-201ENST00000605893 104 ntBASIC0.35□□□□□ -2.35
COL4A4P53420 RNU1-29P-201ENST00000606574 126 ntBASIC0.35□□□□□ -2.35
COL4A4P53420 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.35□□□□□ -2.35
COL4A4P53420 SNORA9.1-201ENST00000362412 131 ntBASIC0.34□□□□□ -2.35
COL4A4P53420 Y_RNA.407-201ENST00000383986 113 ntBASIC0.34□□□□□ -2.35
COL4A4P53420 SNORA36.2-201ENST00000384004 127 ntBASIC0.34□□□□□ -2.35
COL4A4P53420 MIR633-201ENST00000384821 98 ntBASIC0.34□□□□□ -2.35
COL4A4P53420 RNU7-174P-201ENST00000516248 59 ntBASIC0.34□□□□□ -2.35
COL4A4P53420 MIR466-201ENST00000580653 84 ntBASIC0.34□□□□□ -2.35
COL4A4P53420 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.34□□□□□ -2.36
COL4A4P53420 RNU6-829P-201ENST00000363700 112 ntBASIC0.33□□□□□ -2.36
COL4A4P53420 SNORD114-29-201ENST00000364819 70 ntBASIC0.33□□□□□ -2.36
COL4A4P53420 RNU6-669P-201ENST00000365575 107 ntBASIC0.33□□□□□ -2.36
COL4A4P53420 RNU6-110P-201ENST00000384508 104 ntBASIC0.33□□□□□ -2.36
COL4A4P53420 MIR548E-201ENST00000408287 88 ntBASIC0.33□□□□□ -2.36
COL4A4P53420 RNA5SP227-201ENST00000516184 113 ntBASIC0.33□□□□□ -2.36
COL4A4P53420 SNORA70.25-201ENST00000612741 95 ntBASIC0.33□□□□□ -2.36
COL4A4P53420 SNORD60.1-201ENST00000362451 73 ntBASIC0.33□□□□□ -2.36
COL4A4P53420 Y_RNA.74-201ENST00000362911 99 ntBASIC0.33□□□□□ -2.36
COL4A4P53420 RNA5SP98-201ENST00000363158 137 ntBASIC0.33□□□□□ -2.36
COL4A4P53420 Y_RNA.185-201ENST00000363894 100 ntBASIC0.33□□□□□ -2.36
COL4A4P53420 Y_RNA.246-201ENST00000364495 108 ntBASIC0.33□□□□□ -2.36
COL4A4P53420 RNA5SP517-201ENST00000364724 117 ntBASIC0.33□□□□□ -2.36
COL4A4P53420 Y_RNA.325-201ENST00000365171 122 ntBASIC0.33□□□□□ -2.36
COL4A4P53420 AC244090.1-201ENST00000441884 93 ntBASIC0.33□□□□□ -2.36
COL4A4P53420 RNU6-863P-201ENST00000515989 104 ntBASIC0.33□□□□□ -2.36
COL4A4P53420 RNU6-175P-201ENST00000516896 107 ntBASIC0.33□□□□□ -2.36
COL4A4P53420 AP001180.6-201ENST00000584918 159 ntBASIC0.33□□□□□ -2.36
COL4A4P53420 MIR7107-201ENST00000611489 80 ntBASIC0.33□□□□□ -2.36
COL4A4P53420 AC090617.8-201ENST00000623339 167 ntBASIC0.33□□□□□ -2.36
COL4A4P53420 SNORD44.1-201ENST00000363202 61 ntBASIC0.32□□□□□ -2.36
COL4A4P53420 SNORA33.1-201ENST00000364957 130 ntBASIC0.32□□□□□ -2.36
COL4A4P53420 Y_RNA.610-201ENST00000410681 103 ntBASIC0.32□□□□□ -2.36
COL4A4P53420 MIR548AE1-201ENST00000583292 70 ntBASIC0.32□□□□□ -2.36
COL4A4P53420 MIR4473-201ENST00000583731 91 ntBASIC0.32□□□□□ -2.36
COL4A4P53420 MIR3925-201ENST00000584674 77 ntBASIC0.32□□□□□ -2.36
COL4A4P53420 U2.7-201ENST00000619197 100 ntBASIC0.32□□□□□ -2.36
COL4A4P53420 MIR604-201ENST00000384880 94 ntBASIC0.31□□□□□ -2.36
COL4A4P53420 MIR1255B2-201ENST00000408618 67 ntBASIC0.31□□□□□ -2.36
COL4A4P53420 SNORA40.8-201ENST00000411034 126 ntBASIC0.31□□□□□ -2.36
COL4A4P53420 AC021146.9-201ENST00000512503 156 ntBASIC0.31□□□□□ -2.36
COL4A4P53420 RNU4-54P-201ENST00000516428 129 ntBASIC0.31□□□□□ -2.36
COL4A4P53420 MIR140-201ENST00000385282 100 ntBASIC0.3□□□□□ -2.36
COL4A4P53420 MIR548AD-201ENST00000584780 82 ntBASIC0.3□□□□□ -2.36
COL4A4P53420 SNORA25.18-201ENST00000607153 114 ntBASIC0.3□□□□□ -2.36
COL4A4P53420 RNU6-446P-201ENST00000362827 106 ntBASIC0.3□□□□□ -2.36
COL4A4P53420 RNU6-1079P-201ENST00000362861 110 ntBASIC0.3□□□□□ -2.36
COL4A4P53420 RNU6-302P-201ENST00000365249 107 ntBASIC0.3□□□□□ -2.36
COL4A4P53420 MIR106A-201ENST00000384870 81 ntBASIC0.3□□□□□ -2.36
COL4A4P53420 MIR517B-201ENST00000385102 67 ntBASIC0.3□□□□□ -2.36
COL4A4P53420 RNU6-1232P-201ENST00000516299 86 ntBASIC0.3□□□□□ -2.36
COL4A4P53420 RNU7-188P-201ENST00000517063 64 ntBASIC0.3□□□□□ -2.36
COL4A4P53420 RN7SL660P-201ENST00000614852 299 ntBASIC0.3□□□□□ -2.36
COL4A4P53420 uc_338.17-201ENST00000619633 179 ntBASIC0.3□□□□□ -2.36
COL4A4P53420 RNU6-502P-201ENST00000362419 108 ntBASIC0.29□□□□□ -2.36
COL4A4P53420 RNY1P8-201ENST00000383970 114 ntBASIC0.29□□□□□ -2.36
COL4A4P53420 RNU6-520P-201ENST00000384717 104 ntBASIC0.29□□□□□ -2.36
COL4A4P53420 RNU6ATAC29P-201ENST00000408088 125 ntBASIC0.29□□□□□ -2.36
COL4A4P53420 RNA5SP67-201ENST00000516422 131 ntBASIC0.29□□□□□ -2.36
COL4A4P53420 MIR4752-201ENST00000579672 72 ntBASIC0.29□□□□□ -2.36
COL4A4P53420 MIR4677-201ENST00000584153 80 ntBASIC0.29□□□□□ -2.36
COL4A4P53420 U6.96-201ENST00000636425 70 ntBASIC0.29□□□□□ -2.36
COL4A4P53420 SNORA75.1-201ENST00000391130 148 ntBASIC0.28□□□□□ -2.36
COL4A4P53420 AC084368.1-201ENST00000620935 65 ntBASIC0.28□□□□□ -2.36
COL4A4P53420 MIR103A1-201ENST00000362165 78 ntBASIC0.27□□□□□ -2.37
COL4A4P53420 Y_RNA.282-201ENST00000364793 102 ntBASIC0.27□□□□□ -2.37
COL4A4P53420 SNORA41B-201ENST00000384785 128 ntBASIC0.27□□□□□ -2.37
COL4A4P53420 MIRLET7B-201ENST00000385140 83 ntBASIC0.27□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 483.3 ms