Protein–RNA interactions for Protein: P49761

CLK3, Dual specificity protein kinase CLK3, humanhuman

Known RBP Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3P49761 MIR1255B2-201ENST00000408618 67 ntBASIC0.48□□□□□ -2.33
CLK3P49761 RNU6-518P-201ENST00000516056 96 ntBASIC0.48□□□□□ -2.33
CLK3P49761 MIR5087-201ENST00000635826 76 ntBASIC0.48□□□□□ -2.33
CLK3P49761 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.47□□□□□ -2.33
CLK3P49761 MIR3925-201ENST00000584674 77 ntBASIC0.47□□□□□ -2.33
CLK3P49761 RNU6-829P-201ENST00000363700 112 ntBASIC0.46□□□□□ -2.34
CLK3P49761 Y_RNA.325-201ENST00000365171 122 ntBASIC0.46□□□□□ -2.34
CLK3P49761 RNU6-1036P-201ENST00000383959 104 ntBASIC0.46□□□□□ -2.34
CLK3P49761 RNU6-987P-201ENST00000384759 104 ntBASIC0.46□□□□□ -2.34
CLK3P49761 AC114737.2-201ENST00000421583 173 ntBASIC0.46□□□□□ -2.34
CLK3P49761 RN7SL660P-201ENST00000614852 299 ntBASIC0.46□□□□□ -2.34
CLK3P49761 MIR499B-201ENST00000636498 73 ntBASIC0.46□□□□□ -2.34
CLK3P49761 Y_RNA.74-201ENST00000362911 99 ntBASIC0.45□□□□□ -2.34
CLK3P49761 MIR519A2-201ENST00000384990 87 ntBASIC0.45□□□□□ -2.34
CLK3P49761 MIRLET7B-201ENST00000385140 83 ntBASIC0.45□□□□□ -2.34
CLK3P49761 RNU4-37P-201ENST00000410214 84 ntBASIC0.45□□□□□ -2.34
CLK3P49761 SNORA68.3-201ENST00000515906 83 ntBASIC0.45□□□□□ -2.34
CLK3P49761 RNU7-129P-201ENST00000516128 62 ntBASIC0.45□□□□□ -2.34
CLK3P49761 RNA5SP470-201ENST00000516463 106 ntBASIC0.45□□□□□ -2.34
CLK3P49761 SNORA9.1-201ENST00000362412 131 ntBASIC0.44□□□□□ -2.34
CLK3P49761 RNU6-502P-201ENST00000362419 108 ntBASIC0.44□□□□□ -2.34
CLK3P49761 SNORD115-25-201ENST00000362619 82 ntBASIC0.44□□□□□ -2.34
CLK3P49761 RNA5SP499-201ENST00000363982 119 ntBASIC0.44□□□□□ -2.34
CLK3P49761 RNU6-614P-201ENST00000384369 107 ntBASIC0.44□□□□□ -2.34
CLK3P49761 MIR106A-201ENST00000384870 81 ntBASIC0.44□□□□□ -2.34
CLK3P49761 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.44□□□□□ -2.34
CLK3P49761 RNU7-154P-201ENST00000516194 62 ntBASIC0.44□□□□□ -2.34
CLK3P49761 U6.59-201ENST00000615686 107 ntBASIC0.44□□□□□ -2.34
CLK3P49761 MIR6513-201ENST00000621188 64 ntBASIC0.44□□□□□ -2.34
CLK3P49761 RNU6-1246P-201ENST00000391064 107 ntBASIC0.43□□□□□ -2.34
CLK3P49761 MIRLET7D-201ENST00000362263 87 ntBASIC0.42□□□□□ -2.34
CLK3P49761 Y_RNA.236-201ENST00000364427 111 ntBASIC0.42□□□□□ -2.34
CLK3P49761 SNORA50A-201ENST00000384225 134 ntBASIC0.42□□□□□ -2.34
CLK3P49761 SNORA41B-201ENST00000384785 128 ntBASIC0.42□□□□□ -2.34
CLK3P49761 SCARNA11.2-201ENST00000517183 154 ntBASIC0.42□□□□□ -2.34
CLK3P49761 MIR103A1-201ENST00000362165 78 ntBASIC0.41□□□□□ -2.34
CLK3P49761 RNU6-446P-201ENST00000362827 106 ntBASIC0.41□□□□□ -2.34
CLK3P49761 RNU6-782P-201ENST00000516852 104 ntBASIC0.41□□□□□ -2.34
CLK3P49761 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.4□□□□□ -2.34
CLK3P49761 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.4□□□□□ -2.34
CLK3P49761 AC090625.1-201ENST00000357130 210 ntBASIC0.39□□□□□ -2.35
CLK3P49761 Y_RNA.282-201ENST00000364793 102 ntBASIC0.39□□□□□ -2.35
CLK3P49761 SNORD116-16-201ENST00000384533 92 ntBASIC0.39□□□□□ -2.35
CLK3P49761 MIR216A-201ENST00000385063 110 ntBASIC0.39□□□□□ -2.35
CLK3P49761 RNU6-127P-201ENST00000390897 107 ntBASIC0.39□□□□□ -2.35
CLK3P49761 RNU6ATAC29P-201ENST00000408088 125 ntBASIC0.39□□□□□ -2.35
CLK3P49761 RNU6-520P-201ENST00000384717 104 ntBASIC0.38□□□□□ -2.35
CLK3P49761 MIR527-201ENST00000385244 85 ntBASIC0.38□□□□□ -2.35
CLK3P49761 AC022709.1-201ENST00000615967 87 ntBASIC0.38□□□□□ -2.35
CLK3P49761 RNA5SP98-201ENST00000363158 137 ntBASIC0.37□□□□□ -2.35
CLK3P49761 RNU6-815P-201ENST00000384080 113 ntBASIC0.37□□□□□ -2.35
CLK3P49761 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC0.37□□□□□ -2.35
CLK3P49761 RNA5SP62-201ENST00000363457 110 ntBASIC0.36□□□□□ -2.35
CLK3P49761 SNORD115-23-201ENST00000364461 82 ntBASIC0.36□□□□□ -2.35
CLK3P49761 MIR936-201ENST00000401264 98 ntBASIC0.36□□□□□ -2.35
CLK3P49761 RNU6-141P-201ENST00000410499 105 ntBASIC0.36□□□□□ -2.35
CLK3P49761 RNU7-119P-201ENST00000459279 63 ntBASIC0.36□□□□□ -2.35
CLK3P49761 snoU13.18-201ENST00000459483 104 ntBASIC0.36□□□□□ -2.35
CLK3P49761 AC108740.1-201ENST00000498629 225 ntBASIC0.36□□□□□ -2.35
CLK3P49761 AC069113.3-201ENST00000521019 150 ntBASIC0.36□□□□□ -2.35
CLK3P49761 AP000676.1-201ENST00000533307 52 ntBASIC0.36□□□□□ -2.35
CLK3P49761 MIR6515-201ENST00000619843 57 ntBASIC0.36□□□□□ -2.35
CLK3P49761 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.35□□□□□ -2.35
CLK3P49761 MIR429-201ENST00000362106 83 ntBASIC0.34□□□□□ -2.36
CLK3P49761 RNU6-1327P-201ENST00000365302 105 ntBASIC0.34□□□□□ -2.36
CLK3P49761 RNU6-246P-201ENST00000384702 107 ntBASIC0.34□□□□□ -2.36
CLK3P49761 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.34□□□□□ -2.36
CLK3P49761 MIR4711-201ENST00000578274 70 ntBASIC0.34□□□□□ -2.36
CLK3P49761 MIR548AG1-201ENST00000579932 66 ntBASIC0.34□□□□□ -2.36
CLK3P49761 AL353803.5-201ENST00000599815 141 ntBASIC0.34□□□□□ -2.36
CLK3P49761 RNU6-231P-201ENST00000517122 103 ntBASIC0.33□□□□□ -2.36
CLK3P49761 SNORD113-4-201ENST00000364802 75 ntBASIC0.32□□□□□ -2.36
CLK3P49761 CR383656.4-201ENST00000546909 122 ntBASIC0.32□□□□□ -2.36
CLK3P49761 snoR1.1-201ENST00000628177 80 ntBASIC0.32□□□□□ -2.36
CLK3P49761 VTRNA1-3-201ENST00000365645 89 ntBASIC0.31□□□□□ -2.36
CLK3P49761 MIR643-201ENST00000385267 97 ntBASIC0.31□□□□□ -2.36
CLK3P49761 MIR892B-201ENST00000401279 77 ntBASIC0.31□□□□□ -2.36
CLK3P49761 RNA5SP134-201ENST00000516492 96 ntBASIC0.31□□□□□ -2.36
CLK3P49761 MIR6514-201ENST00000622549 70 ntBASIC0.31□□□□□ -2.36
CLK3P49761 Y_RNA.109-201ENST00000363215 102 ntBASIC0.3□□□□□ -2.36
CLK3P49761 Y_RNA.355-201ENST00000365462 98 ntBASIC0.3□□□□□ -2.36
CLK3P49761 RNU6-458P-201ENST00000384179 107 ntBASIC0.3□□□□□ -2.36
CLK3P49761 MIR598-201ENST00000384868 97 ntBASIC0.3□□□□□ -2.36
CLK3P49761 MIR548H2-201ENST00000408874 88 ntBASIC0.3□□□□□ -2.36
CLK3P49761 RNU7-55P-201ENST00000459426 62 ntBASIC0.3□□□□□ -2.36
CLK3P49761 RNU6-180P-201ENST00000516697 61 ntBASIC0.3□□□□□ -2.36
CLK3P49761 MIR4432-201ENST00000581823 84 ntBASIC0.3□□□□□ -2.36
CLK3P49761 U6.58-201ENST00000613107 107 ntBASIC0.3□□□□□ -2.36
CLK3P49761 MIR4315-1-201ENST00000636800 73 ntBASIC0.3□□□□□ -2.36
CLK3P49761 MIR4315-2-201ENST00000640925 73 ntBASIC0.3□□□□□ -2.36
CLK3P49761 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.3□□□□□ -2.36
CLK3P49761 MIR148A-201ENST00000362215 68 ntBASIC0.29□□□□□ -2.36
CLK3P49761 MIR4743-201ENST00000584576 69 ntBASIC0.29□□□□□ -2.36
CLK3P49761 MIR7110-201ENST00000612638 86 ntBASIC0.29□□□□□ -2.36
CLK3P49761 RNU6-900P-201ENST00000384498 102 ntBASIC0.28□□□□□ -2.36
CLK3P49761 RNA5SP163-201ENST00000410304 99 ntBASIC0.28□□□□□ -2.36
CLK3P49761 Y_RNA.722-201ENST00000517279 114 ntBASIC0.28□□□□□ -2.36
CLK3P49761 RNU6-1312P-201ENST00000362425 108 ntBASIC0.27□□□□□ -2.37
CLK3P49761 SNORD114-23-201ENST00000363536 72 ntBASIC0.27□□□□□ -2.37
CLK3P49761 RNA5SP325-201ENST00000363756 130 ntBASIC0.27□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 173.5 ms