Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 RNU6-49P-201ENST00000384256 107 ntBASIC-0.47□□□□□ -2.48
SHMT1P34896 RNU6-337P-201ENST00000391243 106 ntBASIC-0.47□□□□□ -2.48
SHMT1P34896 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-0.47□□□□□ -2.48
SHMT1P34896 IGLL4P-201ENST00000614590 133 ntBASIC-0.47□□□□□ -2.48
SHMT1P34896 U6.96-201ENST00000636425 70 ntBASIC-0.47□□□□□ -2.48
SHMT1P34896 RNU6-284P-201ENST00000411105 106 ntBASIC-0.48□□□□□ -2.49
SHMT1P34896 AC114755.3-201ENST00000481111 251 ntBASIC-0.48□□□□□ -2.49
SHMT1P34896 AC006160.2-201ENST00000637708 154 ntBASIC-0.48□□□□□ -2.49
SHMT1P34896 RNA5SP451-201ENST00000410588 110 ntBASIC-0.49□□□□□ -2.49
SHMT1P34896 RNA5SP147-201ENST00000516493 109 ntBASIC-0.49□□□□□ -2.49
SHMT1P34896 AC093726.3-201ENST00000637588 150 ntBASIC-0.49□□□□□ -2.49
SHMT1P34896 RNY1P1-201ENST00000364372 112 ntBASIC-0.5□□□□□ -2.49
SHMT1P34896 AL445193.1-201ENST00000441183 141 ntBASIC-0.5□□□□□ -2.49
SHMT1P34896 MIR6851-201ENST00000617060 67 ntBASIC-0.5□□□□□ -2.49
SHMT1P34896 AL391099.1-201ENST00000624635 187 ntBASIC-0.5□□□□□ -2.49
SHMT1P34896 snoR1.1-201ENST00000628177 80 ntBASIC-0.5□□□□□ -2.49
SHMT1P34896 MIRLET7B-201ENST00000385140 83 ntBASIC-0.51□□□□□ -2.49
SHMT1P34896 Y_RNA.593-201ENST00000410292 98 ntBASIC-0.51□□□□□ -2.49
SHMT1P34896 SNORD38.3-201ENST00000516599 73 ntBASIC-0.51□□□□□ -2.49
SHMT1P34896 MIR5704-201ENST00000584029 77 ntBASIC-0.51□□□□□ -2.49
SHMT1P34896 MIR4436A-201ENST00000585278 85 ntBASIC-0.51□□□□□ -2.49
SHMT1P34896 MIR548AZ-201ENST00000616567 95 ntBASIC-0.51□□□□□ -2.49
SHMT1P34896 uc_338.36-201ENST00000622331 158 ntBASIC-0.51□□□□□ -2.49
SHMT1P34896 SNORD115-23-201ENST00000364461 82 ntBASIC-0.52□□□□□ -2.49
SHMT1P34896 RNU6-686P-201ENST00000364839 107 ntBASIC-0.52□□□□□ -2.49
SHMT1P34896 RNU6-129P-201ENST00000391022 107 ntBASIC-0.52□□□□□ -2.49
SHMT1P34896 snoU13.19-201ENST00000459148 104 ntBASIC-0.52□□□□□ -2.49
SHMT1P34896 snoMBII-202.2-201ENST00000517263 86 ntBASIC-0.52□□□□□ -2.49
SHMT1P34896 AC108676.2-201ENST00000605225 163 ntBASIC-0.52□□□□□ -2.49
SHMT1P34896 MIR8068-201ENST00000618032 68 ntBASIC-0.52□□□□□ -2.49
SHMT1P34896 RNA5SP368-201ENST00000364298 116 ntBASIC-0.53□□□□□ -2.49
SHMT1P34896 Y_RNA.426-201ENST00000384068 113 ntBASIC-0.53□□□□□ -2.49
SHMT1P34896 AC090617.8-201ENST00000623339 167 ntBASIC-0.53□□□□□ -2.49
SHMT1P34896 SNORA32.3-201ENST00000384772 121 ntBASIC-0.54□□□□□ -2.5
SHMT1P34896 RPS29P8-201ENST00000445109 171 ntBASIC-0.54□□□□□ -2.5
SHMT1P34896 RNU6-303P-201ENST00000517091 106 ntBASIC-0.54□□□□□ -2.5
SHMT1P34896 SNORD114-14-201ENST00000362723 75 ntBASIC-0.55□□□□□ -2.5
SHMT1P34896 SNORD114-15-201ENST00000364687 72 ntBASIC-0.55□□□□□ -2.5
SHMT1P34896 Y_RNA.607-201ENST00000410597 98 ntBASIC-0.55□□□□□ -2.5
SHMT1P34896 MIR6739-201ENST00000622461 75 ntBASIC-0.55□□□□□ -2.5
SHMT1P34896 SNORA33.1-201ENST00000364957 130 ntBASIC-0.56□□□□□ -2.5
SHMT1P34896 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.56□□□□□ -2.5
SHMT1P34896 MIR521-2-201ENST00000384818 87 ntBASIC-0.56□□□□□ -2.5
SHMT1P34896 RNU6-380P-201ENST00000410207 107 ntBASIC-0.56□□□□□ -2.5
SHMT1P34896 MIRLET7A1-201ENST00000362295 80 ntBASIC-0.58□□□□□ -2.5
SHMT1P34896 RNU6-294P-201ENST00000364999 102 ntBASIC-0.58□□□□□ -2.5
SHMT1P34896 MIR204-201ENST00000385200 110 ntBASIC-0.58□□□□□ -2.5
SHMT1P34896 SNORD75.1-201ENST00000408373 60 ntBASIC-0.58□□□□□ -2.5
SHMT1P34896 RNU6-721P-201ENST00000410155 105 ntBASIC-0.58□□□□□ -2.5
SHMT1P34896 MIR5588-201ENST00000581890 63 ntBASIC-0.58□□□□□ -2.5
SHMT1P34896 RNU6-478P-201ENST00000363904 110 ntBASIC-0.59□□□□□ -2.5
SHMT1P34896 SNORD95.1-201ENST00000364099 68 ntBASIC-0.59□□□□□ -2.5
SHMT1P34896 SNORA3B-201ENST00000391305 131 ntBASIC-0.59□□□□□ -2.5
SHMT1P34896 SNORA13-201ENST00000458790 133 ntBASIC-0.59□□□□□ -2.5
SHMT1P34896 RNA5SP470-201ENST00000516463 106 ntBASIC-0.59□□□□□ -2.5
SHMT1P34896 MIR6854-201ENST00000614935 69 ntBASIC-0.59□□□□□ -2.5
SHMT1P34896 Y_RNA.73-201ENST00000362910 113 ntBASIC-0.6□□□□□ -2.51
SHMT1P34896 Y_RNA.369-201ENST00000365568 117 ntBASIC-0.6□□□□□ -2.51
SHMT1P34896 RNU6-979P-201ENST00000383896 107 ntBASIC-0.6□□□□□ -2.51
SHMT1P34896 MIR224-201ENST00000384889 81 ntBASIC-0.6□□□□□ -2.51
SHMT1P34896 MIR450A2-201ENST00000385022 100 ntBASIC-0.6□□□□□ -2.51
SHMT1P34896 CYP3A54P-201ENST00000566950 75 ntBASIC-0.6□□□□□ -2.51
SHMT1P34896 MIR5582-201ENST00000579697 68 ntBASIC-0.6□□□□□ -2.51
SHMT1P34896 MIR4464-201ENST00000580818 92 ntBASIC-0.6□□□□□ -2.51
SHMT1P34896 MIR3675-201ENST00000583661 73 ntBASIC-0.6□□□□□ -2.51
SHMT1P34896 MIR1297-201ENST00000637311 77 ntBASIC-0.6□□□□□ -2.51
SHMT1P34896 AC074348.1-201ENST00000426503 132 ntBASIC-0.61□□□□□ -2.51
SHMT1P34896 SNORA62.4-201ENST00000365504 151 ntBASIC-0.62□□□□□ -2.51
SHMT1P34896 SNORD22.1-201ENST00000516331 125 ntBASIC-0.62□□□□□ -2.51
SHMT1P34896 RNU6-807P-201ENST00000516805 107 ntBASIC-0.62□□□□□ -2.51
SHMT1P34896 RNU6-315P-201ENST00000362666 107 ntBASIC-0.63□□□□□ -2.51
SHMT1P34896 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.63□□□□□ -2.51
SHMT1P34896 MIR518B-201ENST00000385127 83 ntBASIC-0.63□□□□□ -2.51
SHMT1P34896 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.63□□□□□ -2.51
SHMT1P34896 RNU7-171P-201ENST00000459581 62 ntBASIC-0.63□□□□□ -2.51
SHMT1P34896 MIR3681-201ENST00000580089 72 ntBASIC-0.63□□□□□ -2.51
SHMT1P34896 MIR1255B2-201ENST00000408618 67 ntBASIC-0.64□□□□□ -2.51
SHMT1P34896 RNU6-242P-201ENST00000384359 107 ntBASIC-0.65□□□□□ -2.51
SHMT1P34896 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.65□□□□□ -2.51
SHMT1P34896 AC022137.1-201ENST00000483735 151 ntBASIC-0.65□□□□□ -2.51
SHMT1P34896 AC021146.6-201ENST00000514659 117 ntBASIC-0.65□□□□□ -2.51
SHMT1P34896 MIR3179-1-201ENST00000578940 84 ntBASIC-0.65□□□□□ -2.51
SHMT1P34896 MIR3179-2-201ENST00000579107 84 ntBASIC-0.65□□□□□ -2.51
SHMT1P34896 MIR3179-3-201ENST00000579566 84 ntBASIC-0.65□□□□□ -2.51
SHMT1P34896 MIR3179-4-201ENST00000617599 84 ntBASIC-0.65□□□□□ -2.51
SHMT1P34896 SNORD74.6-201ENST00000364796 70 ntBASIC-0.66□□□□□ -2.52
SHMT1P34896 SNORA8.1-201ENST00000384250 140 ntBASIC-0.66□□□□□ -2.52
SHMT1P34896 RNU6-30P-201ENST00000384561 107 ntBASIC-0.66□□□□□ -2.52
SHMT1P34896 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.66□□□□□ -2.52
SHMT1P34896 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-0.66□□□□□ -2.52
SHMT1P34896 MIR494-201ENST00000349529 81 ntBASIC-0.67□□□□□ -2.52
SHMT1P34896 RNU6-330P-201ENST00000363015 107 ntBASIC-0.67□□□□□ -2.52
SHMT1P34896 Y_RNA.316-201ENST00000365118 111 ntBASIC-0.67□□□□□ -2.52
SHMT1P34896 RNU6-881P-201ENST00000516813 102 ntBASIC-0.67□□□□□ -2.52
SHMT1P34896 AL353803.5-201ENST00000599815 141 ntBASIC-0.67□□□□□ -2.52
SHMT1P34896 MIR6888-201ENST00000621977 67 ntBASIC-0.67□□□□□ -2.52
SHMT1P34896 RNU6-1094P-201ENST00000362416 104 ntBASIC-0.68□□□□□ -2.52
SHMT1P34896 RNU6-820P-201ENST00000384273 107 ntBASIC-0.68□□□□□ -2.52
SHMT1P34896 Y_RNA.219-201ENST00000364232 113 ntBASIC-0.69□□□□□ -2.52
SHMT1P34896 RNU6-656P-201ENST00000516785 107 ntBASIC-0.69□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 185.7 ms