Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 MIR608-201ENST00000384820 100 ntBASIC0.64□□□□□ -2.31
COL3A1P02461 MIR548E-201ENST00000408287 88 ntBASIC0.64□□□□□ -2.31
COL3A1P02461 AC244090.1-201ENST00000441884 93 ntBASIC0.64□□□□□ -2.31
COL3A1P02461 AC069271.1-201ENST00000445577 156 ntBASIC0.64□□□□□ -2.31
COL3A1P02461 snoU13.19-201ENST00000459148 104 ntBASIC0.64□□□□□ -2.31
COL3A1P02461 CYP3A54P-201ENST00000566950 75 ntBASIC0.64□□□□□ -2.31
COL3A1P02461 AC023932.2-201ENST00000603176 175 ntBASIC0.64□□□□□ -2.31
COL3A1P02461 AC243829.6-201ENST00000612652 106 ntBASIC0.64□□□□□ -2.31
COL3A1P02461 RNU6-1079P-201ENST00000362861 110 ntBASIC0.63□□□□□ -2.31
COL3A1P02461 MIR140-201ENST00000385282 100 ntBASIC0.63□□□□□ -2.31
COL3A1P02461 RNU7-174P-201ENST00000516248 59 ntBASIC0.63□□□□□ -2.31
COL3A1P02461 RNU6-229P-201ENST00000516614 102 ntBASIC0.63□□□□□ -2.31
COL3A1P02461 RNU6-122P-201ENST00000516818 107 ntBASIC0.63□□□□□ -2.31
COL3A1P02461 MIR4752-201ENST00000579672 72 ntBASIC0.63□□□□□ -2.31
COL3A1P02461 U6.96-201ENST00000636425 70 ntBASIC0.63□□□□□ -2.31
COL3A1P02461 RNU6-829P-201ENST00000363700 112 ntBASIC0.62□□□□□ -2.31
COL3A1P02461 SNORA40.8-201ENST00000411034 126 ntBASIC0.62□□□□□ -2.31
COL3A1P02461 HMGN2P22-201ENST00000427588 175 ntBASIC0.62□□□□□ -2.31
COL3A1P02461 SNORD118-201ENST00000363593 134 ntBASIC0.61□□□□□ -2.31
COL3A1P02461 SNORD114-29-201ENST00000364819 70 ntBASIC0.61□□□□□ -2.31
COL3A1P02461 MIR516B1-201ENST00000385211 90 ntBASIC0.61□□□□□ -2.31
COL3A1P02461 RNU6-848P-201ENST00000515948 107 ntBASIC0.61□□□□□ -2.31
COL3A1P02461 RNU6-617P-201ENST00000516147 107 ntBASIC0.61□□□□□ -2.31
COL3A1P02461 RNU6-473P-201ENST00000516164 107 ntBASIC0.61□□□□□ -2.31
COL3A1P02461 RNU6-1049P-201ENST00000516414 107 ntBASIC0.61□□□□□ -2.31
COL3A1P02461 SNORD60.1-201ENST00000362451 73 ntBASIC0.61□□□□□ -2.31
COL3A1P02461 MIR582-201ENST00000365731 98 ntBASIC0.61□□□□□ -2.31
COL3A1P02461 RNU6-110P-201ENST00000384508 104 ntBASIC0.61□□□□□ -2.31
COL3A1P02461 RNA5SP63-201ENST00000391225 112 ntBASIC0.61□□□□□ -2.31
COL3A1P02461 SNORD71-201ENST00000411292 86 ntBASIC0.61□□□□□ -2.31
COL3A1P02461 MIR5087-201ENST00000635826 76 ntBASIC0.61□□□□□ -2.31
COL3A1P02461 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.6□□□□□ -2.31
COL3A1P02461 Y_RNA.246-201ENST00000364495 108 ntBASIC0.6□□□□□ -2.31
COL3A1P02461 RNU6-141P-201ENST00000410499 105 ntBASIC0.6□□□□□ -2.31
COL3A1P02461 ACA64.5-201ENST00000516207 127 ntBASIC0.6□□□□□ -2.31
COL3A1P02461 Y_RNA.423-201ENST00000384057 113 ntBASIC0.59□□□□□ -2.32
COL3A1P02461 MIR518A1-201ENST00000385068 85 ntBASIC0.59□□□□□ -2.32
COL3A1P02461 AL021921.1-201ENST00000442774 93 ntBASIC0.59□□□□□ -2.32
COL3A1P02461 SNORA25.18-201ENST00000607153 114 ntBASIC0.59□□□□□ -2.32
COL3A1P02461 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.59□□□□□ -2.32
COL3A1P02461 Y_RNA.236-201ENST00000364427 111 ntBASIC0.58□□□□□ -2.32
COL3A1P02461 RNY1P8-201ENST00000383970 114 ntBASIC0.58□□□□□ -2.32
COL3A1P02461 RNU6-30P-201ENST00000384561 107 ntBASIC0.58□□□□□ -2.32
COL3A1P02461 MIR4636-201ENST00000582271 80 ntBASIC0.58□□□□□ -2.32
COL3A1P02461 RNU1-29P-201ENST00000606574 126 ntBASIC0.58□□□□□ -2.32
COL3A1P02461 U4.4-201ENST00000620626 117 ntBASIC0.58□□□□□ -2.32
COL3A1P02461 MIR6759-201ENST00000638110 65 ntBASIC0.58□□□□□ -2.32
COL3A1P02461 SNORA75.1-201ENST00000391130 148 ntBASIC0.57□□□□□ -2.32
COL3A1P02461 MIR4723-201ENST00000585070 81 ntBASIC0.56□□□□□ -2.32
COL3A1P02461 MIR4653-201ENST00000585107 83 ntBASIC0.56□□□□□ -2.32
COL3A1P02461 AC084368.1-201ENST00000620935 65 ntBASIC0.55□□□□□ -2.32
COL3A1P02461 RNU6-446P-201ENST00000362827 106 ntBASIC0.54□□□□□ -2.32
COL3A1P02461 Y_RNA.74-201ENST00000362911 99 ntBASIC0.54□□□□□ -2.32
COL3A1P02461 Y_RNA.325-201ENST00000365171 122 ntBASIC0.54□□□□□ -2.32
COL3A1P02461 SNORA50A-201ENST00000384225 134 ntBASIC0.54□□□□□ -2.32
COL3A1P02461 RNU6-520P-201ENST00000384717 104 ntBASIC0.54□□□□□ -2.32
COL3A1P02461 MIR1255B2-201ENST00000408618 67 ntBASIC0.54□□□□□ -2.32
COL3A1P02461 RNU6-863P-201ENST00000515989 104 ntBASIC0.54□□□□□ -2.32
COL3A1P02461 RNU7-188P-201ENST00000517063 64 ntBASIC0.54□□□□□ -2.32
COL3A1P02461 RNU6ATAC29P-201ENST00000408088 125 ntBASIC0.54□□□□□ -2.32
COL3A1P02461 MIR519A2-201ENST00000384990 87 ntBASIC0.53□□□□□ -2.33
COL3A1P02461 AC114737.2-201ENST00000421583 173 ntBASIC0.53□□□□□ -2.33
COL3A1P02461 PSMC1P5-201ENST00000512850 177 ntBASIC0.53□□□□□ -2.33
COL3A1P02461 RNU6-518P-201ENST00000516056 96 ntBASIC0.53□□□□□ -2.33
COL3A1P02461 RNA5SP470-201ENST00000516463 106 ntBASIC0.53□□□□□ -2.33
COL3A1P02461 MIR4514-201ENST00000581410 57 ntBASIC0.53□□□□□ -2.33
COL3A1P02461 MIR4677-201ENST00000584153 80 ntBASIC0.53□□□□□ -2.33
COL3A1P02461 MIR6718-201ENST00000616153 80 ntBASIC0.53□□□□□ -2.33
COL3A1P02461 SNORA9.1-201ENST00000362412 131 ntBASIC0.52□□□□□ -2.33
COL3A1P02461 RNU6-808P-201ENST00000391233 108 ntBASIC0.52□□□□□ -2.33
COL3A1P02461 RNA5SP25-201ENST00000410815 110 ntBASIC0.52□□□□□ -2.33
COL3A1P02461 RNU7-119P-201ENST00000459279 63 ntBASIC0.52□□□□□ -2.33
COL3A1P02461 RNU6-1232P-201ENST00000516299 86 ntBASIC0.52□□□□□ -2.33
COL3A1P02461 RNU4-54P-201ENST00000516428 129 ntBASIC0.52□□□□□ -2.33
COL3A1P02461 Y_RNA.722-201ENST00000517279 114 ntBASIC0.52□□□□□ -2.33
COL3A1P02461 MIR5589-201ENST00000579442 60 ntBASIC0.52□□□□□ -2.33
COL3A1P02461 MIR548AD-201ENST00000584780 82 ntBASIC0.52□□□□□ -2.33
COL3A1P02461 AC090617.8-201ENST00000623339 167 ntBASIC0.52□□□□□ -2.33
COL3A1P02461 MIR760-201ENST00000390220 80 ntBASIC0.51□□□□□ -2.33
COL3A1P02461 SNORA62.5-201ENST00000516634 120 ntBASIC0.51□□□□□ -2.33
COL3A1P02461 RNU6-175P-201ENST00000516896 107 ntBASIC0.51□□□□□ -2.33
COL3A1P02461 MIR6773-201ENST00000612812 74 ntBASIC0.51□□□□□ -2.33
COL3A1P02461 MIR6755-201ENST00000619993 66 ntBASIC0.51□□□□□ -2.33
COL3A1P02461 RNA5SP128-201ENST00000365305 116 ntBASIC0.5□□□□□ -2.33
COL3A1P02461 SNORA41B-201ENST00000384785 128 ntBASIC0.5□□□□□ -2.33
COL3A1P02461 MIR329-2-201ENST00000385029 84 ntBASIC0.5□□□□□ -2.33
COL3A1P02461 MIR527-201ENST00000385244 85 ntBASIC0.5□□□□□ -2.33
COL3A1P02461 RNU6-337P-201ENST00000391243 106 ntBASIC0.5□□□□□ -2.33
COL3A1P02461 RNU6-1036P-201ENST00000383959 104 ntBASIC0.49□□□□□ -2.33
COL3A1P02461 MIR501-201ENST00000390204 84 ntBASIC0.49□□□□□ -2.33
COL3A1P02461 Z95118.1-201ENST00000421372 247 ntBASIC0.49□□□□□ -2.33
COL3A1P02461 MIR409-201ENST00000362237 79 ntBASIC0.48□□□□□ -2.33
COL3A1P02461 SNORD115-25-201ENST00000362619 82 ntBASIC0.48□□□□□ -2.33
COL3A1P02461 RNU7-154P-201ENST00000516194 62 ntBASIC0.48□□□□□ -2.33
COL3A1P02461 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.48□□□□□ -2.33
COL3A1P02461 SNORD114-15-201ENST00000364687 72 ntBASIC0.48□□□□□ -2.33
COL3A1P02461 SNORD116-16-201ENST00000384533 92 ntBASIC0.48□□□□□ -2.33
COL3A1P02461 MIR429-201ENST00000362106 83 ntBASIC0.47□□□□□ -2.33
COL3A1P02461 RNU6-502P-201ENST00000362419 108 ntBASIC0.47□□□□□ -2.33
COL3A1P02461 SNORD44.1-201ENST00000363202 61 ntBASIC0.47□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 267.3 ms