Protein–RNA interactions for Protein: S4R1E0

H2afb1, Histone H2A, mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H2afb1S4R1E0 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
H2afb1S4R1E0 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
H2afb1S4R1E0 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
H2afb1S4R1E0 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC14.51□□□□□ -0.09
H2afb1S4R1E0 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
H2afb1S4R1E0 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC14.51□□□□□ -0.09
H2afb1S4R1E0 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
H2afb1S4R1E0 Gm37055-201ENSMUST00000191866 133 ntBASIC14.51□□□□□ -0.09
H2afb1S4R1E0 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
H2afb1S4R1E0 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
H2afb1S4R1E0 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
H2afb1S4R1E0 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
H2afb1S4R1E0 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC14.51□□□□□ -0.09
H2afb1S4R1E0 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
H2afb1S4R1E0 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
H2afb1S4R1E0 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
H2afb1S4R1E0 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
H2afb1S4R1E0 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
H2afb1S4R1E0 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC14.51□□□□□ -0.09
H2afb1S4R1E0 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
H2afb1S4R1E0 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Gm11336-201ENSMUST00000118168 334 ntBASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Gm18421-201ENSMUST00000204122 625 ntBASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
H2afb1S4R1E0 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
H2afb1S4R1E0 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
H2afb1S4R1E0 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
H2afb1S4R1E0 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
H2afb1S4R1E0 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
H2afb1S4R1E0 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
H2afb1S4R1E0 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
H2afb1S4R1E0 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
H2afb1S4R1E0 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC14.48□□□□□ -0.09
H2afb1S4R1E0 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
H2afb1S4R1E0 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC14.48□□□□□ -0.09
H2afb1S4R1E0 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
H2afb1S4R1E0 Gm29994-201ENSMUST00000195495 1193 ntBASIC14.48□□□□□ -0.09
H2afb1S4R1E0 Gm29707-201ENSMUST00000196325 491 ntBASIC14.48□□□□□ -0.09
H2afb1S4R1E0 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
H2afb1S4R1E0 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC14.48□□□□□ -0.09
H2afb1S4R1E0 AC112142.1-201ENSMUST00000228796 918 ntBASIC14.48□□□□□ -0.09
H2afb1S4R1E0 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
H2afb1S4R1E0 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
H2afb1S4R1E0 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms