Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Vps28Q9D1C8 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Vps28Q9D1C8 Gm1818-201ENSMUST00000169406 1184 ntBASIC16.35■□□□□ 0.21
Vps28Q9D1C8 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Vps28Q9D1C8 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Vps28Q9D1C8 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Vps28Q9D1C8 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Vps28Q9D1C8 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Vps28Q9D1C8 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Vps28Q9D1C8 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC16.35■□□□□ 0.21
Vps28Q9D1C8 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
Vps28Q9D1C8 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Vps28Q9D1C8 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 Gm27459-201ENSMUST00000184860 107 ntBASIC16.34■□□□□ 0.21
Vps28Q9D1C8 AC127349.1-201ENSMUST00000224590 266 ntBASIC16.34■□□□□ 0.21
Vps28Q9D1C8 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 AC132265.1-201ENSMUST00000219233 1665 ntBASIC16.34■□□□□ 0.21
Vps28Q9D1C8 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps28Q9D1C8 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
Vps28Q9D1C8 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Vps28Q9D1C8 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.21
Vps28Q9D1C8 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC16.33■□□□□ 0.21
Vps28Q9D1C8 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
Vps28Q9D1C8 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Vps28Q9D1C8 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
Vps28Q9D1C8 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC16.33■□□□□ 0.2
Vps28Q9D1C8 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Vps28Q9D1C8 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Vps28Q9D1C8 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC16.33■□□□□ 0.2
Vps28Q9D1C8 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Vps28Q9D1C8 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC16.33■□□□□ 0.2
Vps28Q9D1C8 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
Vps28Q9D1C8 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Vps28Q9D1C8 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Vps28Q9D1C8 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Vps28Q9D1C8 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
Vps28Q9D1C8 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Vps28Q9D1C8 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Vps28Q9D1C8 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Vps28Q9D1C8 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Vps28Q9D1C8 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Vps28Q9D1C8 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Vps28Q9D1C8 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vps28Q9D1C8 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
Vps28Q9D1C8 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vps28Q9D1C8 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC16.32■□□□□ 0.2
Vps28Q9D1C8 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vps28Q9D1C8 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC16.32■□□□□ 0.2
Vps28Q9D1C8 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
Vps28Q9D1C8 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Vps28Q9D1C8 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vps28Q9D1C8 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vps28Q9D1C8 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vps28Q9D1C8 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Vps28Q9D1C8 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Vps28Q9D1C8 Gm26917-202ENSMUST00000192833 3329 ntBASIC16.32■□□□□ 0.2
Vps28Q9D1C8 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vps28Q9D1C8 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC16.31■□□□□ 0.2
Vps28Q9D1C8 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC16.31■□□□□ 0.2
Vps28Q9D1C8 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
Vps28Q9D1C8 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC16.31■□□□□ 0.2
Vps28Q9D1C8 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vps28Q9D1C8 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vps28Q9D1C8 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vps28Q9D1C8 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vps28Q9D1C8 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vps28Q9D1C8 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Vps28Q9D1C8 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Vps28Q9D1C8 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Vps28Q9D1C8 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Vps28Q9D1C8 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Vps28Q9D1C8 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC16.31■□□□□ 0.2
Vps28Q9D1C8 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
Vps28Q9D1C8 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC16.31■□□□□ 0.2
Vps28Q9D1C8 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vps28Q9D1C8 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vps28Q9D1C8 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms