Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC16.79■□□□□ 0.28
Ddx56Q9D0R4 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Ddx56Q9D0R4 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
Ddx56Q9D0R4 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ddx56Q9D0R4 AC154471.1-201ENSMUST00000224418 436 ntBASIC16.79■□□□□ 0.28
Ddx56Q9D0R4 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC16.79■□□□□ 0.28
Ddx56Q9D0R4 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ddx56Q9D0R4 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ddx56Q9D0R4 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ddx56Q9D0R4 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ddx56Q9D0R4 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ddx56Q9D0R4 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ddx56Q9D0R4 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Ddx56Q9D0R4 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 Gm33142-201ENSMUST00000193913 867 ntBASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ddx56Q9D0R4 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ddx56Q9D0R4 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ddx56Q9D0R4 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ddx56Q9D0R4 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ddx56Q9D0R4 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ddx56Q9D0R4 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ddx56Q9D0R4 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Ddx56Q9D0R4 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC16.77■□□□□ 0.28
Ddx56Q9D0R4 AC153794.1-201ENSMUST00000169148 126 ntBASIC16.77■□□□□ 0.28
Ddx56Q9D0R4 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC16.77■□□□□ 0.28
Ddx56Q9D0R4 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC16.77■□□□□ 0.28
Ddx56Q9D0R4 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ddx56Q9D0R4 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ddx56Q9D0R4 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ddx56Q9D0R4 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Ddx56Q9D0R4 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Ddx56Q9D0R4 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Ddx56Q9D0R4 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC16.77■□□□□ 0.27
Ddx56Q9D0R4 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Ddx56Q9D0R4 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Ddx56Q9D0R4 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Ddx56Q9D0R4 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ddx56Q9D0R4 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ddx56Q9D0R4 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Ddx56Q9D0R4 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Ddx56Q9D0R4 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ddx56Q9D0R4 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC16.76■□□□□ 0.27
Ddx56Q9D0R4 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Ddx56Q9D0R4 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ddx56Q9D0R4 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ddx56Q9D0R4 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Ddx56Q9D0R4 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Ddx56Q9D0R4 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ddx56Q9D0R4 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC16.76■□□□□ 0.27
Ddx56Q9D0R4 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ddx56Q9D0R4 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ddx56Q9D0R4 Gm38327-201ENSMUST00000195852 1755 ntBASIC16.76■□□□□ 0.27
Ddx56Q9D0R4 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
Ddx56Q9D0R4 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ddx56Q9D0R4 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Ddx56Q9D0R4 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC16.76■□□□□ 0.27
Ddx56Q9D0R4 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Ddx56Q9D0R4 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 AC093043.3-201ENSMUST00000226531 2273 ntBASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 Gm7284-201ENSMUST00000131667 944 ntBASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Ddx56Q9D0R4 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC16.75■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms