Protein–RNA interactions for Protein: Q9CR29

Ccdc43, Coiled-coil domain-containing protein 43, mousemouse

Known RBP Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc43Q9CR29 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc43Q9CR29 Gm13836-201ENSMUST00000121159 501 ntBASIC17.78■□□□□ 0.44
Ccdc43Q9CR29 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Ccdc43Q9CR29 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc43Q9CR29 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc43Q9CR29 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Ccdc43Q9CR29 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc43Q9CR29 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc43Q9CR29 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
Ccdc43Q9CR29 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc43Q9CR29 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc43Q9CR29 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc43Q9CR29 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc43Q9CR29 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc43Q9CR29 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Ccdc43Q9CR29 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Ccdc43Q9CR29 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc43Q9CR29 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc43Q9CR29 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc43Q9CR29 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc43Q9CR29 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
Ccdc43Q9CR29 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc43Q9CR29 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Ccdc43Q9CR29 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc43Q9CR29 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc43Q9CR29 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC17.77■□□□□ 0.44
Ccdc43Q9CR29 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
Ccdc43Q9CR29 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc43Q9CR29 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc43Q9CR29 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ccdc43Q9CR29 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ccdc43Q9CR29 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ccdc43Q9CR29 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ccdc43Q9CR29 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
Ccdc43Q9CR29 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc43Q9CR29 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc43Q9CR29 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC17.76■□□□□ 0.43
Ccdc43Q9CR29 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc43Q9CR29 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc43Q9CR29 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Ccdc43Q9CR29 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC17.76■□□□□ 0.43
Ccdc43Q9CR29 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Ccdc43Q9CR29 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc43Q9CR29 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc43Q9CR29 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc43Q9CR29 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Ccdc43Q9CR29 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC17.76■□□□□ 0.43
Ccdc43Q9CR29 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
Ccdc43Q9CR29 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc43Q9CR29 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc43Q9CR29 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc43Q9CR29 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Ccdc43Q9CR29 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc43Q9CR29 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc43Q9CR29 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC17.75■□□□□ 0.43
Ccdc43Q9CR29 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc43Q9CR29 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc43Q9CR29 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc43Q9CR29 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC17.75■□□□□ 0.43
Ccdc43Q9CR29 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC17.75■□□□□ 0.43
Ccdc43Q9CR29 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc43Q9CR29 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Ccdc43Q9CR29 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc43Q9CR29 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc43Q9CR29 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc43Q9CR29 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc43Q9CR29 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc43Q9CR29 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Ccdc43Q9CR29 Gm43072-201ENSMUST00000200283 1671 ntBASIC17.74■□□□□ 0.43
Ccdc43Q9CR29 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC17.74■□□□□ 0.43
Ccdc43Q9CR29 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc43Q9CR29 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc43Q9CR29 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc43Q9CR29 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc43Q9CR29 Gm15442-201ENSMUST00000117905 1527 ntBASIC17.74■□□□□ 0.43
Ccdc43Q9CR29 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc43Q9CR29 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc43Q9CR29 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC17.74■□□□□ 0.43
Ccdc43Q9CR29 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC17.74■□□□□ 0.43
Ccdc43Q9CR29 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc43Q9CR29 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC17.74■□□□□ 0.43
Ccdc43Q9CR29 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc43Q9CR29 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Ccdc43Q9CR29 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc43Q9CR29 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Ccdc43Q9CR29 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc43Q9CR29 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc43Q9CR29 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Ccdc43Q9CR29 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc43Q9CR29 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Ccdc43Q9CR29 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC17.73■□□□□ 0.43
Ccdc43Q9CR29 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Ccdc43Q9CR29 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc43Q9CR29 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC17.73■□□□□ 0.43
Ccdc43Q9CR29 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC17.73■□□□□ 0.43
Ccdc43Q9CR29 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC17.73■□□□□ 0.43
Ccdc43Q9CR29 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC17.73■□□□□ 0.43
Ccdc43Q9CR29 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc43Q9CR29 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ccdc43Q9CR29 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms