Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cstf1Q99LC2 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
Cstf1Q99LC2 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cstf1Q99LC2 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cstf1Q99LC2 Gm45412-201ENSMUST00000210217 2275 ntBASIC15.92■□□□□ 0.14
Cstf1Q99LC2 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Cstf1Q99LC2 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cstf1Q99LC2 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cstf1Q99LC2 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC15.91■□□□□ 0.14
Cstf1Q99LC2 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cstf1Q99LC2 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC15.91■□□□□ 0.14
Cstf1Q99LC2 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cstf1Q99LC2 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cstf1Q99LC2 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
Cstf1Q99LC2 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC15.91■□□□□ 0.14
Cstf1Q99LC2 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cstf1Q99LC2 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cstf1Q99LC2 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cstf1Q99LC2 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
Cstf1Q99LC2 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC15.91■□□□□ 0.14
Cstf1Q99LC2 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cstf1Q99LC2 Gm8784-201ENSMUST00000222096 1435 ntBASIC15.91■□□□□ 0.14
Cstf1Q99LC2 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Cstf1Q99LC2 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Cstf1Q99LC2 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cstf1Q99LC2 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cstf1Q99LC2 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC15.91■□□□□ 0.14
Cstf1Q99LC2 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Cstf1Q99LC2 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Tfap2a-209ENSMUST00000225180 1828 ntBASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cstf1Q99LC2 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Gm25406-201ENSMUST00000157599 105 ntBASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Gm27321-201ENSMUST00000185021 205 ntBASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Gm37171-201ENSMUST00000192636 1185 ntBASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Gm44945-201ENSMUST00000206764 1187 ntBASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
Cstf1Q99LC2 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Cstf1Q99LC2 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
Cstf1Q99LC2 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Cstf1Q99LC2 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cstf1Q99LC2 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC15.89■□□□□ 0.13
Cstf1Q99LC2 Gm13127-201ENSMUST00000118978 1389 ntBASIC15.89■□□□□ 0.13
Cstf1Q99LC2 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cstf1Q99LC2 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cstf1Q99LC2 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cstf1Q99LC2 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cstf1Q99LC2 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cstf1Q99LC2 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Cstf1Q99LC2 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
Cstf1Q99LC2 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
Cstf1Q99LC2 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC15.89■□□□□ 0.13
Cstf1Q99LC2 AC131709.1-201ENSMUST00000224731 1180 ntBASIC15.89■□□□□ 0.13
Cstf1Q99LC2 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Cstf1Q99LC2 Gm8396-201ENSMUST00000057361 823 ntBASIC15.89■□□□□ 0.13
Cstf1Q99LC2 Gm15743-202ENSMUST00000182690 1901 ntBASIC15.89■□□□□ 0.13
Cstf1Q99LC2 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cstf1Q99LC2 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Cstf1Q99LC2 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
Cstf1Q99LC2 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Cstf1Q99LC2 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cstf1Q99LC2 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Cstf1Q99LC2 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cstf1Q99LC2 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cstf1Q99LC2 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cstf1Q99LC2 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cstf1Q99LC2 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Cstf1Q99LC2 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cstf1Q99LC2 Slc35b2-202ENSMUST00000223987 1766 ntBASIC15.88■□□□□ 0.13
Cstf1Q99LC2 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Cstf1Q99LC2 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cstf1Q99LC2 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cstf1Q99LC2 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC15.88■□□□□ 0.13
Cstf1Q99LC2 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC15.88■□□□□ 0.13
Cstf1Q99LC2 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
Cstf1Q99LC2 Gm11764-201ENSMUST00000120221 623 ntBASIC15.88■□□□□ 0.13
Cstf1Q99LC2 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Cstf1Q99LC2 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC15.88■□□□□ 0.13
Cstf1Q99LC2 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC15.88■□□□□ 0.13
Cstf1Q99LC2 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC15.88■□□□□ 0.13
Cstf1Q99LC2 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Cstf1Q99LC2 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms