Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Trav5d-4Q5R1F6 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Trav5d-4Q5R1F6 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC13.77□□□□□ -0.21
Trav5d-4Q5R1F6 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Trav5d-4Q5R1F6 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Trav5d-4Q5R1F6 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 Gm5587-201ENSMUST00000206270 674 ntBASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 Ntrk2-205ENSMUST00000224402 2284 ntBASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Trav5d-4Q5R1F6 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC13.75□□□□□ -0.21
Trav5d-4Q5R1F6 Gm9889-202ENSMUST00000206983 1577 ntBASIC13.75□□□□□ -0.21
Trav5d-4Q5R1F6 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Trav5d-4Q5R1F6 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC13.75□□□□□ -0.21
Trav5d-4Q5R1F6 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav5d-4Q5R1F6 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav5d-4Q5R1F6 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav5d-4Q5R1F6 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav5d-4Q5R1F6 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC13.75□□□□□ -0.21
Trav5d-4Q5R1F6 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
Trav5d-4Q5R1F6 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav5d-4Q5R1F6 Gm44430-201ENSMUST00000203376 995 ntBASIC13.75□□□□□ -0.21
Trav5d-4Q5R1F6 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Trav5d-4Q5R1F6 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Trav5d-4Q5R1F6 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
Trav5d-4Q5R1F6 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC13.75□□□□□ -0.21
Trav5d-4Q5R1F6 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav5d-4Q5R1F6 Prob1-201ENSMUST00000097619 3021 ntBASIC13.75□□□□□ -0.21
Trav5d-4Q5R1F6 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav5d-4Q5R1F6 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Trav5d-4Q5R1F6 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav5d-4Q5R1F6 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav5d-4Q5R1F6 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav5d-4Q5R1F6 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav5d-4Q5R1F6 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trav5d-4Q5R1F6 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 Gm6345-202ENSMUST00000180900 204 ntBASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 AC153526.5-201ENSMUST00000218661 2147 ntBASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trav5d-4Q5R1F6 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav5d-4Q5R1F6 Gm8258-201ENSMUST00000055593 1449 ntBASIC13.73□□□□□ -0.21
Trav5d-4Q5R1F6 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav5d-4Q5R1F6 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC13.73□□□□□ -0.21
Trav5d-4Q5R1F6 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC13.73□□□□□ -0.21
Trav5d-4Q5R1F6 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC13.73□□□□□ -0.21
Trav5d-4Q5R1F6 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC13.73□□□□□ -0.21
Trav5d-4Q5R1F6 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav5d-4Q5R1F6 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav5d-4Q5R1F6 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC13.73□□□□□ -0.21
Trav5d-4Q5R1F6 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav5d-4Q5R1F6 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav5d-4Q5R1F6 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC13.73□□□□□ -0.21
Trav5d-4Q5R1F6 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav5d-4Q5R1F6 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trav5d-4Q5R1F6 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms