Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Trim40Q3UWA4 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim40Q3UWA4 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim40Q3UWA4 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim40Q3UWA4 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim40Q3UWA4 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC15.02■□□□□ -0
Trim40Q3UWA4 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC15.02■□□□□ -0
Trim40Q3UWA4 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC15.02■□□□□ -0
Trim40Q3UWA4 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim40Q3UWA4 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim40Q3UWA4 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim40Q3UWA4 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC15.02■□□□□ -0
Trim40Q3UWA4 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
Trim40Q3UWA4 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC15.02■□□□□ -0
Trim40Q3UWA4 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC15.02■□□□□ -0
Trim40Q3UWA4 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim40Q3UWA4 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC15.02■□□□□ -0
Trim40Q3UWA4 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim40Q3UWA4 Gm37736-201ENSMUST00000193564 2802 ntBASIC15.02■□□□□ -0
Trim40Q3UWA4 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
Trim40Q3UWA4 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
Trim40Q3UWA4 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC15.02■□□□□ -0
Trim40Q3UWA4 Gm12527-201ENSMUST00000117967 564 ntBASIC15.02■□□□□ -0
Trim40Q3UWA4 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC15.02■□□□□ -0
Trim40Q3UWA4 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim40Q3UWA4 Gm18958-201ENSMUST00000174258 762 ntBASIC15.02■□□□□ -0
Trim40Q3UWA4 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim40Q3UWA4 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Trim40Q3UWA4 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Trim40Q3UWA4 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Trim40Q3UWA4 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Trim40Q3UWA4 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
Trim40Q3UWA4 Actl10-202ENSMUST00000226583 1501 ntBASIC15.02□□□□□ -0.01
Trim40Q3UWA4 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim40Q3UWA4 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Trim40Q3UWA4 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim40Q3UWA4 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim40Q3UWA4 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim40Q3UWA4 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Trim40Q3UWA4 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim40Q3UWA4 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Trim40Q3UWA4 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim40Q3UWA4 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim40Q3UWA4 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Trim40Q3UWA4 Gm14464-201ENSMUST00000119658 1254 ntBASIC15.01□□□□□ -0.01
Trim40Q3UWA4 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Trim40Q3UWA4 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC15.01□□□□□ -0.01
Trim40Q3UWA4 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim40Q3UWA4 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim40Q3UWA4 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Trim40Q3UWA4 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim40Q3UWA4 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim40Q3UWA4 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Trim40Q3UWA4 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Trim40Q3UWA4 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim40Q3UWA4 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim40Q3UWA4 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Trim40Q3UWA4 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Trim40Q3UWA4 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Trim40Q3UWA4 Rbfox2-206ENSMUST00000227314 1810 ntBASIC15.01□□□□□ -0.01
Trim40Q3UWA4 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC15□□□□□ -0.01
Trim40Q3UWA4 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Trim40Q3UWA4 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim40Q3UWA4 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim40Q3UWA4 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC15□□□□□ -0.01
Trim40Q3UWA4 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Trim40Q3UWA4 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim40Q3UWA4 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Trim40Q3UWA4 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim40Q3UWA4 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim40Q3UWA4 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC15□□□□□ -0.01
Trim40Q3UWA4 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC15□□□□□ -0.01
Trim40Q3UWA4 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Trim40Q3UWA4 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC15□□□□□ -0.01
Trim40Q3UWA4 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
Trim40Q3UWA4 AC120002.2-201ENSMUST00000220205 773 ntBASIC15□□□□□ -0.01
Trim40Q3UWA4 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Trim40Q3UWA4 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim40Q3UWA4 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC15□□□□□ -0.01
Trim40Q3UWA4 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim40Q3UWA4 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC15□□□□□ -0.01
Trim40Q3UWA4 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim40Q3UWA4 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC15□□□□□ -0.01
Trim40Q3UWA4 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Trim40Q3UWA4 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim40Q3UWA4 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim40Q3UWA4 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim40Q3UWA4 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim40Q3UWA4 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Trim40Q3UWA4 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC15□□□□□ -0.01
Trim40Q3UWA4 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim40Q3UWA4 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC14.99□□□□□ -0.01
Trim40Q3UWA4 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim40Q3UWA4 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim40Q3UWA4 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim40Q3UWA4 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim40Q3UWA4 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Trim40Q3UWA4 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Trim40Q3UWA4 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC14.99□□□□□ -0.01
Trim40Q3UWA4 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms