Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Upf3bQ3ULL6 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC17.09■□□□□ 0.33
Upf3bQ3ULL6 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Upf3bQ3ULL6 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC17.09■□□□□ 0.33
Upf3bQ3ULL6 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC17.09■□□□□ 0.33
Upf3bQ3ULL6 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC17.09■□□□□ 0.33
Upf3bQ3ULL6 Mir6404-201ENSMUST00000183699 94 ntBASIC17.09■□□□□ 0.33
Upf3bQ3ULL6 AC153889.1-201ENSMUST00000219257 330 ntBASIC17.09■□□□□ 0.33
Upf3bQ3ULL6 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Upf3bQ3ULL6 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
Upf3bQ3ULL6 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Upf3bQ3ULL6 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Upf3bQ3ULL6 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
Upf3bQ3ULL6 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Upf3bQ3ULL6 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Upf3bQ3ULL6 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
Upf3bQ3ULL6 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Upf3bQ3ULL6 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Upf3bQ3ULL6 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Upf3bQ3ULL6 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Upf3bQ3ULL6 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Upf3bQ3ULL6 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
Upf3bQ3ULL6 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Upf3bQ3ULL6 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
Upf3bQ3ULL6 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Upf3bQ3ULL6 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC17.08■□□□□ 0.33
Upf3bQ3ULL6 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC17.08■□□□□ 0.33
Upf3bQ3ULL6 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.33
Upf3bQ3ULL6 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC17.08■□□□□ 0.32
Upf3bQ3ULL6 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Upf3bQ3ULL6 Gm9103-201ENSMUST00000119371 405 ntBASIC17.08■□□□□ 0.32
Upf3bQ3ULL6 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC17.08■□□□□ 0.32
Upf3bQ3ULL6 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Upf3bQ3ULL6 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Upf3bQ3ULL6 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC17.08■□□□□ 0.32
Upf3bQ3ULL6 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Upf3bQ3ULL6 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Upf3bQ3ULL6 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 Gm12895-201ENSMUST00000122214 226 ntBASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 AC108846.1-201ENSMUST00000214531 513 ntBASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 Gm10819-201ENSMUST00000099988 561 ntBASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Upf3bQ3ULL6 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 Gm15372-201ENSMUST00000120729 834 ntBASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Upf3bQ3ULL6 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC17.05■□□□□ 0.32
Upf3bQ3ULL6 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC17.05■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms