Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC14.6□□□□□ -0.07
Cdh11P55288 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Cdh11P55288 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdh11P55288 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC14.6□□□□□ -0.07
Cdh11P55288 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdh11P55288 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC14.6□□□□□ -0.07
Cdh11P55288 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdh11P55288 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdh11P55288 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
Cdh11P55288 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdh11P55288 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Cdh11P55288 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdh11P55288 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdh11P55288 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdh11P55288 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Cdh11P55288 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
Cdh11P55288 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC14.59□□□□□ -0.07
Cdh11P55288 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Cdh11P55288 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Cdh11P55288 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC14.59□□□□□ -0.07
Cdh11P55288 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdh11P55288 Gm27000-201ENSMUST00000182943 842 ntBASIC14.59□□□□□ -0.07
Cdh11P55288 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Cdh11P55288 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Cdh11P55288 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdh11P55288 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC14.59□□□□□ -0.07
Cdh11P55288 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC14.59□□□□□ -0.07
Cdh11P55288 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdh11P55288 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Cdh11P55288 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Cdh11P55288 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Cdh11P55288 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdh11P55288 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC14.59□□□□□ -0.07
Cdh11P55288 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
Cdh11P55288 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Cdh11P55288 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC14.58□□□□□ -0.07
Cdh11P55288 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC14.58□□□□□ -0.07
Cdh11P55288 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Cdh11P55288 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
Cdh11P55288 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
Cdh11P55288 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cdh11P55288 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC14.58□□□□□ -0.08
Cdh11P55288 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cdh11P55288 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cdh11P55288 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cdh11P55288 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cdh11P55288 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cdh11P55288 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cdh11P55288 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cdh11P55288 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cdh11P55288 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cdh11P55288 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cdh11P55288 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cdh11P55288 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Cdh11P55288 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Cdh11P55288 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cdh11P55288 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Cdh11P55288 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cdh11P55288 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cdh11P55288 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Cdh11P55288 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cdh11P55288 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cdh11P55288 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cdh11P55288 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cdh11P55288 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Cdh11P55288 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cdh11P55288 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Cdh11P55288 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cdh11P55288 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC14.57□□□□□ -0.08
Cdh11P55288 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC14.57□□□□□ -0.08
Cdh11P55288 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Cdh11P55288 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cdh11P55288 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cdh11P55288 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Cdh11P55288 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Cdh11P55288 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC14.57□□□□□ -0.08
Cdh11P55288 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cdh11P55288 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cdh11P55288 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Cdh11P55288 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cdh11P55288 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cdh11P55288 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Cdh11P55288 Gm7284-201ENSMUST00000131667 944 ntBASIC14.56□□□□□ -0.08
Cdh11P55288 Gm9013-201ENSMUST00000132939 882 ntBASIC14.56□□□□□ -0.08
Cdh11P55288 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC14.56□□□□□ -0.08
Cdh11P55288 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cdh11P55288 Gm10459-201ENSMUST00000202708 1155 ntBASIC14.56□□□□□ -0.08
Cdh11P55288 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cdh11P55288 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Cdh11P55288 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cdh11P55288 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cdh11P55288 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cdh11P55288 Gm8258-201ENSMUST00000055593 1449 ntBASIC14.56□□□□□ -0.08
Cdh11P55288 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cdh11P55288 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
Cdh11P55288 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cdh11P55288 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cdh11P55288 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cdh11P55288 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Cdh11P55288 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC14.56□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 45.7 ms