Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Rfx1P48377 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rfx1P48377 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rfx1P48377 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Rfx1P48377 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Rfx1P48377 AC163637.1-201ENSMUST00000215491 1894 ntBASIC19.14■□□□□ 0.65
Rfx1P48377 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Rfx1P48377 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rfx1P48377 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC19.13■□□□□ 0.65
Rfx1P48377 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rfx1P48377 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rfx1P48377 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC19.13■□□□□ 0.65
Rfx1P48377 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rfx1P48377 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC19.13■□□□□ 0.65
Rfx1P48377 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC19.13■□□□□ 0.65
Rfx1P48377 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Rfx1P48377 Gm7370-201ENSMUST00000219471 767 ntBASIC19.13■□□□□ 0.65
Rfx1P48377 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rfx1P48377 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rfx1P48377 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rfx1P48377 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Rfx1P48377 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rfx1P48377 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Rfx1P48377 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Rfx1P48377 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rfx1P48377 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rfx1P48377 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Rfx1P48377 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rfx1P48377 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Rfx1P48377 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Rfx1P48377 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Rfx1P48377 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Rfx1P48377 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Rfx1P48377 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Rfx1P48377 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Rfx1P48377 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Rfx1P48377 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Rfx1P48377 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Rfx1P48377 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
Rfx1P48377 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Rfx1P48377 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Rfx1P48377 Gm29257-201ENSMUST00000186115 639 ntBASIC19.12■□□□□ 0.65
Rfx1P48377 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Rfx1P48377 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Rfx1P48377 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Rfx1P48377 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Rfx1P48377 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Rfx1P48377 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC19.11■□□□□ 0.65
Rfx1P48377 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Rfx1P48377 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Rfx1P48377 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Rfx1P48377 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Rfx1P48377 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Rfx1P48377 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Rfx1P48377 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Rfx1P48377 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Rfx1P48377 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Rfx1P48377 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Rfx1P48377 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Rfx1P48377 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Rfx1P48377 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Rfx1P48377 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Rfx1P48377 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Rfx1P48377 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Rfx1P48377 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Rfx1P48377 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Rfx1P48377 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Rfx1P48377 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Rfx1P48377 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
Rfx1P48377 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Rfx1P48377 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Rfx1P48377 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC19.1■□□□□ 0.65
Rfx1P48377 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC19.1■□□□□ 0.65
Rfx1P48377 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Rfx1P48377 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Rfx1P48377 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Rfx1P48377 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Rfx1P48377 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Rfx1P48377 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Rfx1P48377 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC19.09■□□□□ 0.65
Rfx1P48377 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Rfx1P48377 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Rfx1P48377 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Rfx1P48377 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Rfx1P48377 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC19.09■□□□□ 0.65
Rfx1P48377 Gm20760-201ENSMUST00000179197 648 ntBASIC19.09■□□□□ 0.65
Rfx1P48377 Gm3272-201ENSMUST00000181181 1229 ntBASIC19.09■□□□□ 0.65
Rfx1P48377 Gm27463-201ENSMUST00000183569 57 ntBASIC19.09■□□□□ 0.65
Rfx1P48377 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC19.09■□□□□ 0.65
Rfx1P48377 Gm10566-201ENSMUST00000086739 996 ntBASIC19.09■□□□□ 0.65
Rfx1P48377 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Rfx1P48377 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Rfx1P48377 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Rfx1P48377 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Rfx1P48377 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Rfx1P48377 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Rfx1P48377 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Rfx1P48377 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Rfx1P48377 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Rfx1P48377 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms