Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC14.72□□□□□ -0.05
Cd40lgP27548 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC14.72□□□□□ -0.05
Cd40lgP27548 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC14.72□□□□□ -0.05
Cd40lgP27548 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cd40lgP27548 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cd40lgP27548 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cd40lgP27548 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
Cd40lgP27548 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Cd40lgP27548 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cd40lgP27548 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
Cd40lgP27548 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC14.72□□□□□ -0.05
Cd40lgP27548 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC14.72□□□□□ -0.05
Cd40lgP27548 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC14.72□□□□□ -0.05
Cd40lgP27548 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cd40lgP27548 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cd40lgP27548 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC14.72□□□□□ -0.05
Cd40lgP27548 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cd40lgP27548 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC14.72□□□□□ -0.05
Cd40lgP27548 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cd40lgP27548 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cd40lgP27548 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cd40lgP27548 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cd40lgP27548 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cd40lgP27548 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Cd40lgP27548 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Cd40lgP27548 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Cd40lgP27548 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cd40lgP27548 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Cd40lgP27548 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
Cd40lgP27548 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
Cd40lgP27548 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
Cd40lgP27548 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Cd40lgP27548 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC14.71□□□□□ -0.05
Cd40lgP27548 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC14.71□□□□□ -0.05
Cd40lgP27548 Gm9103-201ENSMUST00000119371 405 ntBASIC14.71□□□□□ -0.05
Cd40lgP27548 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC14.71□□□□□ -0.05
Cd40lgP27548 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC14.71□□□□□ -0.05
Cd40lgP27548 Mir3081-201ENSMUST00000175305 84 ntBASIC14.71□□□□□ -0.05
Cd40lgP27548 AC125350.1-201ENSMUST00000225115 903 ntBASIC14.71□□□□□ -0.05
Cd40lgP27548 Otx2os1-206ENSMUST00000228153 787 ntBASIC14.71□□□□□ -0.05
Cd40lgP27548 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cd40lgP27548 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Cd40lgP27548 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cd40lgP27548 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
Cd40lgP27548 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
Cd40lgP27548 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Cd40lgP27548 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Cd40lgP27548 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
Cd40lgP27548 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cd40lgP27548 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Cd40lgP27548 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cd40lgP27548 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cd40lgP27548 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Cd40lgP27548 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cd40lgP27548 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC14.7□□□□□ -0.06
Cd40lgP27548 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Cd40lgP27548 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC14.7□□□□□ -0.06
Cd40lgP27548 Gm10459-201ENSMUST00000202708 1155 ntBASIC14.7□□□□□ -0.06
Cd40lgP27548 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
Cd40lgP27548 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cd40lgP27548 Gm10819-201ENSMUST00000099988 561 ntBASIC14.7□□□□□ -0.06
Cd40lgP27548 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cd40lgP27548 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cd40lgP27548 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cd40lgP27548 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cd40lgP27548 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Cd40lgP27548 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC14.7□□□□□ -0.06
Cd40lgP27548 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC14.7□□□□□ -0.06
Cd40lgP27548 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cd40lgP27548 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Cd40lgP27548 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cd40lgP27548 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Cd40lgP27548 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cd40lgP27548 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Cd40lgP27548 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
Cd40lgP27548 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cd40lgP27548 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Cd40lgP27548 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cd40lgP27548 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cd40lgP27548 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cd40lgP27548 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cd40lgP27548 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cd40lgP27548 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC14.69□□□□□ -0.06
Cd40lgP27548 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cd40lgP27548 Ank2-226ENSMUST00000189368 339 ntBASIC14.69□□□□□ -0.06
Cd40lgP27548 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC14.69□□□□□ -0.06
Cd40lgP27548 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC14.69□□□□□ -0.06
Cd40lgP27548 Gm44430-201ENSMUST00000203376 995 ntBASIC14.69□□□□□ -0.06
Cd40lgP27548 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
Cd40lgP27548 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Cd40lgP27548 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC14.69□□□□□ -0.06
Cd40lgP27548 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cd40lgP27548 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cd40lgP27548 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Cd40lgP27548 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cd40lgP27548 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cd40lgP27548 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cd40lgP27548 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cd40lgP27548 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Cd40lgP27548 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 16.5 ms