Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
RaraP11416 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RaraP11416 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RaraP11416 Asic1-205ENSMUST00000228185 1818 ntBASIC17.29■□□□□ 0.36
RaraP11416 Gm6433-201ENSMUST00000118634 875 ntBASIC17.29■□□□□ 0.36
RaraP11416 Gm11355-201ENSMUST00000121120 306 ntBASIC17.29■□□□□ 0.36
RaraP11416 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC17.29■□□□□ 0.36
RaraP11416 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
RaraP11416 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RaraP11416 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
RaraP11416 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RaraP11416 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RaraP11416 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RaraP11416 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RaraP11416 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RaraP11416 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RaraP11416 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RaraP11416 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
RaraP11416 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
RaraP11416 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RaraP11416 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RaraP11416 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RaraP11416 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RaraP11416 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RaraP11416 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC17.28■□□□□ 0.36
RaraP11416 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
RaraP11416 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC17.28■□□□□ 0.36
RaraP11416 Gm11860-201ENSMUST00000122346 1010 ntBASIC17.28■□□□□ 0.36
RaraP11416 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
RaraP11416 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RaraP11416 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC17.28■□□□□ 0.36
RaraP11416 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC17.28■□□□□ 0.36
RaraP11416 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
RaraP11416 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RaraP11416 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RaraP11416 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
RaraP11416 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
RaraP11416 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RaraP11416 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RaraP11416 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RaraP11416 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RaraP11416 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RaraP11416 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RaraP11416 Wnt10b-206ENSMUST00000228546 2709 ntBASIC17.27■□□□□ 0.36
RaraP11416 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RaraP11416 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RaraP11416 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RaraP11416 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC17.27■□□□□ 0.36
RaraP11416 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
RaraP11416 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RaraP11416 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
RaraP11416 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RaraP11416 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RaraP11416 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RaraP11416 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RaraP11416 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC17.27■□□□□ 0.36
RaraP11416 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RaraP11416 Gm44430-201ENSMUST00000203376 995 ntBASIC17.27■□□□□ 0.36
RaraP11416 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RaraP11416 Gm18032-201ENSMUST00000222541 538 ntBASIC17.27■□□□□ 0.36
RaraP11416 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
RaraP11416 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
RaraP11416 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RaraP11416 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC17.27■□□□□ 0.36
RaraP11416 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
RaraP11416 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
RaraP11416 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.35
RaraP11416 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
RaraP11416 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
RaraP11416 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
RaraP11416 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RaraP11416 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC17.26■□□□□ 0.35
RaraP11416 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
RaraP11416 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
RaraP11416 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RaraP11416 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
RaraP11416 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RaraP11416 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RaraP11416 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
RaraP11416 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RaraP11416 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC17.26■□□□□ 0.35
RaraP11416 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC17.26■□□□□ 0.35
RaraP11416 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
RaraP11416 Gm10052-201ENSMUST00000168019 960 ntBASIC17.26■□□□□ 0.35
RaraP11416 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC17.26■□□□□ 0.35
RaraP11416 Mir6982-201ENSMUST00000184354 68 ntBASIC17.26■□□□□ 0.35
RaraP11416 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RaraP11416 Gm18101-201ENSMUST00000215769 548 ntBASIC17.26■□□□□ 0.35
RaraP11416 Gm7729-201ENSMUST00000050143 801 ntBASIC17.26■□□□□ 0.35
RaraP11416 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RaraP11416 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
RaraP11416 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
RaraP11416 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
RaraP11416 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
RaraP11416 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RaraP11416 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RaraP11416 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RaraP11416 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC17.26■□□□□ 0.35
RaraP11416 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
RaraP11416 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 97.3 ms