Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hoxd3P09027 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Hoxd3P09027 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
Hoxd3P09027 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Hoxd3P09027 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hoxd3P09027 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hoxd3P09027 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hoxd3P09027 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hoxd3P09027 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hoxd3P09027 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hoxd3P09027 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Hoxd3P09027 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC12.4□□□□□ -0.42
Hoxd3P09027 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hoxd3P09027 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Hoxd3P09027 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hoxd3P09027 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hoxd3P09027 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
Hoxd3P09027 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hoxd3P09027 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hoxd3P09027 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hoxd3P09027 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC12.4□□□□□ -0.42
Hoxd3P09027 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
Hoxd3P09027 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hoxd3P09027 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
Hoxd3P09027 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
Hoxd3P09027 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hoxd3P09027 Gm20865-201ENSMUST00000179095 856 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Hoxd3P09027 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC12.4□□□□□ -0.42
Hoxd3P09027 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC12.4□□□□□ -0.42
Hoxd3P09027 Thoc7-209ENSMUST00000225325 765 ntBASIC12.4□□□□□ -0.42
Hoxd3P09027 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC12.4□□□□□ -0.42
Hoxd3P09027 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Hoxd3P09027 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hoxd3P09027 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Hoxd3P09027 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hoxd3P09027 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Hoxd3P09027 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.43
Hoxd3P09027 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC12.39□□□□□ -0.43
Hoxd3P09027 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hoxd3P09027 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Hoxd3P09027 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hoxd3P09027 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Hoxd3P09027 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hoxd3P09027 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hoxd3P09027 Gm38116-201ENSMUST00000193873 1533 ntBASIC12.39□□□□□ -0.43
Hoxd3P09027 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hoxd3P09027 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC12.39□□□□□ -0.43
Hoxd3P09027 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Hoxd3P09027 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC12.39□□□□□ -0.43
Hoxd3P09027 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hoxd3P09027 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Hoxd3P09027 Gm18195-201ENSMUST00000207604 706 ntBASIC12.39□□□□□ -0.43
Hoxd3P09027 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC12.39□□□□□ -0.43
Hoxd3P09027 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Hoxd3P09027 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hoxd3P09027 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hoxd3P09027 Gm6858-201ENSMUST00000208582 1468 ntBASIC12.39□□□□□ -0.43
Hoxd3P09027 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Hoxd3P09027 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Hoxd3P09027 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Hoxd3P09027 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hoxd3P09027 Clec4d-201ENSMUST00000032240 1323 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hoxd3P09027 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hoxd3P09027 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Hoxd3P09027 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hoxd3P09027 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hoxd3P09027 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hoxd3P09027 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC12.38□□□□□ -0.43
Hoxd3P09027 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Hoxd3P09027 Haglr-201ENSMUST00000100000 2085 ntBASIC12.38□□□□□ -0.43
Hoxd3P09027 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hoxd3P09027 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Hoxd3P09027 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Hoxd3P09027 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hoxd3P09027 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC12.38□□□□□ -0.43
Hoxd3P09027 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Hoxd3P09027 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC12.38□□□□□ -0.43
Hoxd3P09027 Gm37319-201ENSMUST00000193500 636 ntBASIC12.38□□□□□ -0.43
Hoxd3P09027 Gm6376-201ENSMUST00000209407 580 ntBASIC12.38□□□□□ -0.43
Hoxd3P09027 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC12.38□□□□□ -0.43
Hoxd3P09027 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hoxd3P09027 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Hoxd3P09027 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC12.38□□□□□ -0.43
Hoxd3P09027 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC12.38□□□□□ -0.43
Hoxd3P09027 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hoxd3P09027 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC12.38□□□□□ -0.43
Hoxd3P09027 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Hoxd3P09027 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Hoxd3P09027 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Hoxd3P09027 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Hoxd3P09027 Gm45251-201ENSMUST00000209486 1465 ntBASIC12.38□□□□□ -0.43
Hoxd3P09027 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC12.38□□□□□ -0.43
Hoxd3P09027 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Hoxd3P09027 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hoxd3P09027 AC132265.1-201ENSMUST00000219233 1665 ntBASIC12.38□□□□□ -0.43
Hoxd3P09027 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hoxd3P09027 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hoxd3P09027 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hoxd3P09027 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hoxd3P09027 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms