Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Lmx1bO88609 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Lmx1bO88609 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Lmx1bO88609 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Lmx1bO88609 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Lmx1bO88609 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Lmx1bO88609 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Lmx1bO88609 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Lmx1bO88609 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Lmx1bO88609 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Lmx1bO88609 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC14.46□□□□□ -0.1
Lmx1bO88609 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Lmx1bO88609 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Lmx1bO88609 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Lmx1bO88609 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
Lmx1bO88609 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Lmx1bO88609 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lmx1bO88609 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lmx1bO88609 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lmx1bO88609 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Lmx1bO88609 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Lmx1bO88609 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC14.45□□□□□ -0.1
Lmx1bO88609 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lmx1bO88609 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Lmx1bO88609 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lmx1bO88609 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
Lmx1bO88609 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC14.45□□□□□ -0.1
Lmx1bO88609 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Lmx1bO88609 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC14.45□□□□□ -0.1
Lmx1bO88609 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
Lmx1bO88609 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lmx1bO88609 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC14.45□□□□□ -0.1
Lmx1bO88609 Gm7506-201ENSMUST00000207758 815 ntBASIC14.45□□□□□ -0.1
Lmx1bO88609 Gm6376-201ENSMUST00000209407 580 ntBASIC14.45□□□□□ -0.1
Lmx1bO88609 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC14.45□□□□□ -0.1
Lmx1bO88609 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lmx1bO88609 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Lmx1bO88609 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lmx1bO88609 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lmx1bO88609 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lmx1bO88609 AC069562.2-201ENSMUST00000224644 2146 ntBASIC14.45□□□□□ -0.1
Lmx1bO88609 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC14.45□□□□□ -0.1
Lmx1bO88609 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Lmx1bO88609 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Lmx1bO88609 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lmx1bO88609 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Lmx1bO88609 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lmx1bO88609 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Lmx1bO88609 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
Lmx1bO88609 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Lmx1bO88609 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Lmx1bO88609 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lmx1bO88609 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lmx1bO88609 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lmx1bO88609 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lmx1bO88609 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lmx1bO88609 Gm7507-201ENSMUST00000183053 1008 ntBASIC14.44□□□□□ -0.1
Lmx1bO88609 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC14.44□□□□□ -0.1
Lmx1bO88609 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC14.44□□□□□ -0.1
Lmx1bO88609 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lmx1bO88609 AC161829.1-201ENSMUST00000220298 281 ntBASIC14.44□□□□□ -0.1
Lmx1bO88609 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lmx1bO88609 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Lmx1bO88609 Rps4l-201ENSMUST00000071745 943 ntBASIC14.44□□□□□ -0.1
Lmx1bO88609 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC14.44□□□□□ -0.1
Lmx1bO88609 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lmx1bO88609 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Lmx1bO88609 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC14.44□□□□□ -0.1
Lmx1bO88609 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lmx1bO88609 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC14.44□□□□□ -0.1
Lmx1bO88609 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Lmx1bO88609 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lmx1bO88609 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lmx1bO88609 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lmx1bO88609 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Lmx1bO88609 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lmx1bO88609 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lmx1bO88609 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Lmx1bO88609 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lmx1bO88609 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lmx1bO88609 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lmx1bO88609 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lmx1bO88609 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lmx1bO88609 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lmx1bO88609 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Lmx1bO88609 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lmx1bO88609 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Lmx1bO88609 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lmx1bO88609 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lmx1bO88609 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lmx1bO88609 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lmx1bO88609 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC14.43□□□□□ -0.1
Lmx1bO88609 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lmx1bO88609 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC14.43□□□□□ -0.1
Lmx1bO88609 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC14.43□□□□□ -0.1
Lmx1bO88609 Gm36967-201ENSMUST00000193814 266 ntBASIC14.43□□□□□ -0.1
Lmx1bO88609 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Lmx1bO88609 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC14.43□□□□□ -0.1
Lmx1bO88609 AC127349.1-201ENSMUST00000224590 266 ntBASIC14.43□□□□□ -0.1
Lmx1bO88609 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms