Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Col5a1O88207 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Col5a1O88207 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col5a1O88207 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col5a1O88207 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC14.3□□□□□ -0.12
Col5a1O88207 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col5a1O88207 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col5a1O88207 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col5a1O88207 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col5a1O88207 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col5a1O88207 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col5a1O88207 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col5a1O88207 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
Col5a1O88207 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC14.3□□□□□ -0.12
Col5a1O88207 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col5a1O88207 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col5a1O88207 Gm7787-201ENSMUST00000216858 688 ntBASIC14.3□□□□□ -0.12
Col5a1O88207 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col5a1O88207 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col5a1O88207 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col5a1O88207 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC14.3□□□□□ -0.12
Col5a1O88207 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col5a1O88207 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
Col5a1O88207 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col5a1O88207 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col5a1O88207 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Col5a1O88207 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Col5a1O88207 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Col5a1O88207 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col5a1O88207 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col5a1O88207 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC14.29□□□□□ -0.12
Col5a1O88207 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC14.29□□□□□ -0.12
Col5a1O88207 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col5a1O88207 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC14.29□□□□□ -0.12
Col5a1O88207 Gm45612-201ENSMUST00000211320 160 ntBASIC14.29□□□□□ -0.12
Col5a1O88207 AC127302.2-201ENSMUST00000215212 268 ntBASIC14.29□□□□□ -0.12
Col5a1O88207 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col5a1O88207 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col5a1O88207 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col5a1O88207 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col5a1O88207 Rbfox2-206ENSMUST00000227314 1810 ntBASIC14.29□□□□□ -0.12
Col5a1O88207 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col5a1O88207 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
Col5a1O88207 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col5a1O88207 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Col5a1O88207 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC14.29□□□□□ -0.12
Col5a1O88207 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Col5a1O88207 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Col5a1O88207 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC14.29□□□□□ -0.12
Col5a1O88207 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC14.29□□□□□ -0.12
Col5a1O88207 AC147366.1-201ENSMUST00000227671 852 ntBASIC14.29□□□□□ -0.12
Col5a1O88207 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col5a1O88207 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col5a1O88207 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col5a1O88207 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Col5a1O88207 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col5a1O88207 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col5a1O88207 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col5a1O88207 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col5a1O88207 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
Col5a1O88207 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col5a1O88207 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col5a1O88207 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Col5a1O88207 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col5a1O88207 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC14.28□□□□□ -0.12
Col5a1O88207 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col5a1O88207 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col5a1O88207 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Col5a1O88207 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col5a1O88207 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col5a1O88207 Gm37166-201ENSMUST00000195473 2474 ntBASIC14.28□□□□□ -0.12
Col5a1O88207 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col5a1O88207 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Col5a1O88207 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col5a1O88207 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col5a1O88207 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC14.28□□□□□ -0.12
Col5a1O88207 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC14.28□□□□□ -0.12
Col5a1O88207 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC14.28□□□□□ -0.12
Col5a1O88207 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Col5a1O88207 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col5a1O88207 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col5a1O88207 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col5a1O88207 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col5a1O88207 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col5a1O88207 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col5a1O88207 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col5a1O88207 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col5a1O88207 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col5a1O88207 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col5a1O88207 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col5a1O88207 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col5a1O88207 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Col5a1O88207 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC14.27□□□□□ -0.12
Col5a1O88207 Mir6990-201ENSMUST00000183724 91 ntBASIC14.27□□□□□ -0.12
Col5a1O88207 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Col5a1O88207 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col5a1O88207 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col5a1O88207 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col5a1O88207 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col5a1O88207 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms