Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 MIR4712-201ENST00000583750 82 ntBASIC0.35□□□□□ -2.35
LIMCH1Q9UPQ0 MIR1297-201ENST00000637311 77 ntBASIC0.35□□□□□ -2.35
LIMCH1Q9UPQ0 RNU6-274P-201ENST00000459566 107 ntBASIC0.34□□□□□ -2.36
LIMCH1Q9UPQ0 AC108740.1-201ENST00000498629 225 ntBASIC0.34□□□□□ -2.36
LIMCH1Q9UPQ0 RNU6-807P-201ENST00000516805 107 ntBASIC0.34□□□□□ -2.36
LIMCH1Q9UPQ0 AC069113.3-201ENST00000521019 150 ntBASIC0.34□□□□□ -2.36
LIMCH1Q9UPQ0 MIR548AD-201ENST00000584780 82 ntBASIC0.34□□□□□ -2.36
LIMCH1Q9UPQ0 MIR652-201ENST00000385278 98 ntBASIC0.33□□□□□ -2.36
LIMCH1Q9UPQ0 AC074348.1-201ENST00000426503 132 ntBASIC0.33□□□□□ -2.36
LIMCH1Q9UPQ0 MIR4677-201ENST00000584153 80 ntBASIC0.33□□□□□ -2.36
LIMCH1Q9UPQ0 MIR499B-201ENST00000636498 73 ntBASIC0.33□□□□□ -2.36
LIMCH1Q9UPQ0 MIR4315-1-201ENST00000636800 73 ntBASIC0.33□□□□□ -2.36
LIMCH1Q9UPQ0 MIR4315-2-201ENST00000640925 73 ntBASIC0.33□□□□□ -2.36
LIMCH1Q9UPQ0 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
LIMCH1Q9UPQ0 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.32□□□□□ -2.36
LIMCH1Q9UPQ0 RNU6-815P-201ENST00000384080 113 ntBASIC0.32□□□□□ -2.36
LIMCH1Q9UPQ0 MIR501-201ENST00000390204 84 ntBASIC0.32□□□□□ -2.36
LIMCH1Q9UPQ0 AL691482.2-201ENST00000457453 84 ntBASIC0.32□□□□□ -2.36
LIMCH1Q9UPQ0 MIR548AE1-201ENST00000583292 70 ntBASIC0.32□□□□□ -2.36
LIMCH1Q9UPQ0 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.32□□□□□ -2.36
LIMCH1Q9UPQ0 MIR516B1-201ENST00000385211 90 ntBASIC0.31□□□□□ -2.36
LIMCH1Q9UPQ0 RNU6-279P-201ENST00000391297 101 ntBASIC0.31□□□□□ -2.36
LIMCH1Q9UPQ0 RNU6-752P-201ENST00000516376 102 ntBASIC0.31□□□□□ -2.36
LIMCH1Q9UPQ0 SCARNA17.3-201ENST00000516381 125 ntBASIC0.31□□□□□ -2.36
LIMCH1Q9UPQ0 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.31□□□□□ -2.36
LIMCH1Q9UPQ0 RNU6-1039P-201ENST00000383931 107 ntBASIC0.3□□□□□ -2.36
LIMCH1Q9UPQ0 RNU6-260P-201ENST00000384092 107 ntBASIC0.3□□□□□ -2.36
LIMCH1Q9UPQ0 RNU6-154P-201ENST00000384306 106 ntBASIC0.3□□□□□ -2.36
LIMCH1Q9UPQ0 RNU6-24P-201ENST00000384440 107 ntBASIC0.3□□□□□ -2.36
LIMCH1Q9UPQ0 AC084368.1-201ENST00000620935 65 ntBASIC0.3□□□□□ -2.36
LIMCH1Q9UPQ0 MIR329-2-201ENST00000385029 84 ntBASIC0.29□□□□□ -2.36
LIMCH1Q9UPQ0 MIR1265-201ENST00000408444 86 ntBASIC0.29□□□□□ -2.36
LIMCH1Q9UPQ0 RNU7-129P-201ENST00000516128 62 ntBASIC0.29□□□□□ -2.36
LIMCH1Q9UPQ0 MIR20A-201ENST00000362279 71 ntBASIC0.28□□□□□ -2.36
LIMCH1Q9UPQ0 RNU6-857P-201ENST00000515893 110 ntBASIC0.28□□□□□ -2.36
LIMCH1Q9UPQ0 MIR3675-201ENST00000583661 73 ntBASIC0.28□□□□□ -2.36
LIMCH1Q9UPQ0 MIR6509-201ENST00000614603 85 ntBASIC0.28□□□□□ -2.36
LIMCH1Q9UPQ0 SNORD114-29-201ENST00000364819 70 ntBASIC0.27□□□□□ -2.37
LIMCH1Q9UPQ0 Y_RNA.532-201ENST00000384590 113 ntBASIC0.27□□□□□ -2.37
LIMCH1Q9UPQ0 RNU6-1275P-201ENST00000391087 107 ntBASIC0.27□□□□□ -2.37
LIMCH1Q9UPQ0 AC244090.1-201ENST00000441884 93 ntBASIC0.27□□□□□ -2.37
LIMCH1Q9UPQ0 RNU6-782P-201ENST00000516852 104 ntBASIC0.27□□□□□ -2.37
LIMCH1Q9UPQ0 MIR3925-201ENST00000584674 77 ntBASIC0.27□□□□□ -2.37
LIMCH1Q9UPQ0 MIR6759-201ENST00000638110 65 ntBASIC0.27□□□□□ -2.37
LIMCH1Q9UPQ0 RNU6-127P-201ENST00000390897 107 ntBASIC0.26□□□□□ -2.37
LIMCH1Q9UPQ0 MIR4484-201ENST00000582855 83 ntBASIC0.26□□□□□ -2.37
LIMCH1Q9UPQ0 RNU6-330P-201ENST00000363015 107 ntBASIC0.25□□□□□ -2.37
LIMCH1Q9UPQ0 RNA5SP299-201ENST00000391203 116 ntBASIC0.25□□□□□ -2.37
LIMCH1Q9UPQ0 RNA5SP225-201ENST00000410874 135 ntBASIC0.25□□□□□ -2.37
LIMCH1Q9UPQ0 MIR5093-201ENST00000583199 100 ntBASIC0.25□□□□□ -2.37
LIMCH1Q9UPQ0 U7.4-201ENST00000614961 63 ntBASIC0.25□□□□□ -2.37
LIMCH1Q9UPQ0 AL627230.5-201ENST00000619807 58 ntBASIC0.25□□□□□ -2.37
LIMCH1Q9UPQ0 SNORA8.1-201ENST00000384250 140 ntBASIC0.24□□□□□ -2.37
LIMCH1Q9UPQ0 MIR892B-201ENST00000401279 77 ntBASIC0.24□□□□□ -2.37
LIMCH1Q9UPQ0 RNU7-188P-201ENST00000517063 64 ntBASIC0.24□□□□□ -2.37
LIMCH1Q9UPQ0 SCARNA11.2-201ENST00000517183 154 ntBASIC0.24□□□□□ -2.37
LIMCH1Q9UPQ0 MIR4636-201ENST00000582271 80 ntBASIC0.24□□□□□ -2.37
LIMCH1Q9UPQ0 RNU6-990P-201ENST00000364385 104 ntBASIC0.23□□□□□ -2.37
LIMCH1Q9UPQ0 MIR203A-201ENST00000384836 110 ntBASIC0.23□□□□□ -2.37
LIMCH1Q9UPQ0 SNORA75.1-201ENST00000391130 148 ntBASIC0.23□□□□□ -2.37
LIMCH1Q9UPQ0 MIR876-201ENST00000401147 81 ntBASIC0.23□□□□□ -2.37
LIMCH1Q9UPQ0 MIR3657-201ENST00000584818 117 ntBASIC0.23□□□□□ -2.37
LIMCH1Q9UPQ0 SNORA2.1-201ENST00000363089 137 ntBASIC0.22□□□□□ -2.37
LIMCH1Q9UPQ0 MIR548H2-201ENST00000408874 88 ntBASIC0.22□□□□□ -2.37
LIMCH1Q9UPQ0 SCARNA18B-201ENST00000458806 135 ntBASIC0.22□□□□□ -2.37
LIMCH1Q9UPQ0 SNORD2-201ENST00000459163 69 ntBASIC0.22□□□□□ -2.37
LIMCH1Q9UPQ0 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.22□□□□□ -2.37
LIMCH1Q9UPQ0 SNORA42.1-201ENST00000363515 137 ntBASIC0.21□□□□□ -2.38
LIMCH1Q9UPQ0 MIR610-201ENST00000385139 96 ntBASIC0.21□□□□□ -2.38
LIMCH1Q9UPQ0 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.21□□□□□ -2.38
LIMCH1Q9UPQ0 MIR5589-201ENST00000579442 60 ntBASIC0.21□□□□□ -2.38
LIMCH1Q9UPQ0 MIR4743-201ENST00000584576 69 ntBASIC0.21□□□□□ -2.38
LIMCH1Q9UPQ0 Y_RNA.250-201ENST00000364542 110 ntBASIC0.2□□□□□ -2.38
LIMCH1Q9UPQ0 MIR643-201ENST00000385267 97 ntBASIC0.2□□□□□ -2.38
LIMCH1Q9UPQ0 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC0.2□□□□□ -2.38
LIMCH1Q9UPQ0 MIR548E-201ENST00000408287 88 ntBASIC0.2□□□□□ -2.38
LIMCH1Q9UPQ0 RNU6-175P-201ENST00000516896 107 ntBASIC0.2□□□□□ -2.38
LIMCH1Q9UPQ0 AC145423.2-201ENST00000610631 239 ntBASIC0.2□□□□□ -2.38
LIMCH1Q9UPQ0 RN7SL660P-201ENST00000614852 299 ntBASIC0.2□□□□□ -2.38
LIMCH1Q9UPQ0 MIR6718-201ENST00000616153 80 ntBASIC0.2□□□□□ -2.38
LIMCH1Q9UPQ0 MIR582-201ENST00000365731 98 ntBASIC0.19□□□□□ -2.38
LIMCH1Q9UPQ0 MIR1295A-201ENST00000408463 79 ntBASIC0.19□□□□□ -2.38
LIMCH1Q9UPQ0 RNU6-70P-201ENST00000516438 60 ntBASIC0.19□□□□□ -2.38
LIMCH1Q9UPQ0 SNORA40.17-201ENST00000517256 115 ntBASIC0.19□□□□□ -2.38
LIMCH1Q9UPQ0 FAS-AS1.1-201ENST00000615327 126 ntBASIC0.19□□□□□ -2.38
LIMCH1Q9UPQ0 MIR4662A-201ENST00000637499 67 ntBASIC0.19□□□□□ -2.38
LIMCH1Q9UPQ0 SNORD45.1-201ENST00000363181 77 ntBASIC0.18□□□□□ -2.38
LIMCH1Q9UPQ0 Y_RNA.244-201ENST00000364484 109 ntBASIC0.18□□□□□ -2.38
LIMCH1Q9UPQ0 SNORA63.6-201ENST00000364921 119 ntBASIC0.18□□□□□ -2.38
LIMCH1Q9UPQ0 Y_RNA.633-201ENST00000459107 95 ntBASIC0.18□□□□□ -2.38
LIMCH1Q9UPQ0 MIR5190-201ENST00000581537 80 ntBASIC0.18□□□□□ -2.38
LIMCH1Q9UPQ0 RNA5SP214-201ENST00000363378 118 ntBASIC0.17□□□□□ -2.38
LIMCH1Q9UPQ0 SNORA15B-2-201ENST00000384058 135 ntBASIC0.17□□□□□ -2.38
LIMCH1Q9UPQ0 SNORA15B-1-201ENST00000384334 135 ntBASIC0.17□□□□□ -2.38
LIMCH1Q9UPQ0 MIR106A-201ENST00000384870 81 ntBASIC0.17□□□□□ -2.38
LIMCH1Q9UPQ0 RNA5SP147-201ENST00000516493 109 ntBASIC0.17□□□□□ -2.38
LIMCH1Q9UPQ0 MIR3134-201ENST00000579433 74 ntBASIC0.17□□□□□ -2.38
LIMCH1Q9UPQ0 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.17□□□□□ -2.38
LIMCH1Q9UPQ0 snoU13.19-201ENST00000459148 104 ntBASIC0.16□□□□□ -2.38
LIMCH1Q9UPQ0 RNU6-180P-201ENST00000516697 61 ntBASIC0.16□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 425.3 ms