Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 MIR6874-201ENST00000635894 71 ntBASIC-1.75□□□□□ -2.69
SCN3AQ9NY46 AL021921.1-201ENST00000442774 93 ntBASIC-1.76□□□□□ -2.69
SCN3AQ9NY46 SNORA81.3-201ENST00000517283 198 ntBASIC-1.76□□□□□ -2.69
SCN3AQ9NY46 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.76□□□□□ -2.69
SCN3AQ9NY46 RNA5SP405-201ENST00000363059 114 ntBASIC-1.76□□□□□ -2.69
SCN3AQ9NY46 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.76□□□□□ -2.69
SCN3AQ9NY46 RNU6-1318P-201ENST00000365389 103 ntBASIC-1.76□□□□□ -2.69
SCN3AQ9NY46 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.76□□□□□ -2.69
SCN3AQ9NY46 MIR4773-1-201ENST00000637203 78 ntBASIC-1.76□□□□□ -2.69
SCN3AQ9NY46 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.76□□□□□ -2.69
SCN3AQ9NY46 RNU6-824P-201ENST00000363724 104 ntBASIC-1.77□□□□□ -2.69
SCN3AQ9NY46 Y_RNA.216-201ENST00000364205 93 ntBASIC-1.77□□□□□ -2.69
SCN3AQ9NY46 MIR487B-201ENST00000385021 84 ntBASIC-1.77□□□□□ -2.69
SCN3AQ9NY46 RNU7-197P-201ENST00000458836 62 ntBASIC-1.77□□□□□ -2.69
SCN3AQ9NY46 RNY3P2-201ENST00000362918 102 ntBASIC-1.78□□□□□ -2.69
SCN3AQ9NY46 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-1.78□□□□□ -2.69
SCN3AQ9NY46 RNU6-519P-201ENST00000410590 108 ntBASIC-1.78□□□□□ -2.69
SCN3AQ9NY46 MIR4694-201ENST00000578534 80 ntBASIC-1.78□□□□□ -2.69
SCN3AQ9NY46 MIR548Z-201ENST00000584743 97 ntBASIC-1.78□□□□□ -2.69
SCN3AQ9NY46 RNU6-695P-201ENST00000391157 104 ntBASIC-1.78□□□□□ -2.69
SCN3AQ9NY46 AL118496.2-201ENST00000448300 230 ntBASIC-1.78□□□□□ -2.69
SCN3AQ9NY46 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.78□□□□□ -2.69
SCN3AQ9NY46 RNY3P14-201ENST00000384309 102 ntBASIC-1.79□□□□□ -2.7
SCN3AQ9NY46 RNU6-1219P-201ENST00000516143 112 ntBASIC-1.79□□□□□ -2.7
SCN3AQ9NY46 SNORA18.5-201ENST00000516616 101 ntBASIC-1.79□□□□□ -2.7
SCN3AQ9NY46 RNU6-639P-201ENST00000384074 107 ntBASIC-1.79□□□□□ -2.7
SCN3AQ9NY46 RNU6-246P-201ENST00000384702 107 ntBASIC-1.79□□□□□ -2.7
SCN3AQ9NY46 SNORD19-201ENST00000391191 68 ntBASIC-1.79□□□□□ -2.7
SCN3AQ9NY46 RNU6-1135P-201ENST00000411083 103 ntBASIC-1.79□□□□□ -2.7
SCN3AQ9NY46 RNU6-400P-201ENST00000391173 106 ntBASIC-1.8□□□□□ -2.7
SCN3AQ9NY46 MIR548Q-201ENST00000408404 100 ntBASIC-1.8□□□□□ -2.7
SCN3AQ9NY46 AC090616.4-201ENST00000448026 115 ntBASIC-1.8□□□□□ -2.7
SCN3AQ9NY46 RNU6-168P-201ENST00000516189 101 ntBASIC-1.8□□□□□ -2.7
SCN3AQ9NY46 MIR4679-2-201ENST00000578358 77 ntBASIC-1.8□□□□□ -2.7
SCN3AQ9NY46 AC072026.1-201ENST00000605023 201 ntBASIC-1.8□□□□□ -2.7
SCN3AQ9NY46 Y_RNA.467-201ENST00000384297 102 ntBASIC-1.81□□□□□ -2.7
SCN3AQ9NY46 SNORD37.2-201ENST00000391075 66 ntBASIC-1.81□□□□□ -2.7
SCN3AQ9NY46 RNU6-752P-201ENST00000516376 102 ntBASIC-1.81□□□□□ -2.7
SCN3AQ9NY46 RNU6-781P-201ENST00000516377 101 ntBASIC-1.81□□□□□ -2.7
SCN3AQ9NY46 U7.2-201ENST00000607576 63 ntBASIC-1.81□□□□□ -2.7
SCN3AQ9NY46 AC025166.1-201ENST00000612411 163 ntBASIC-1.81□□□□□ -2.7
SCN3AQ9NY46 MIR5683-201ENST00000636514 76 ntBASIC-1.81□□□□□ -2.7
SCN3AQ9NY46 Y_RNA.71-201ENST00000362892 104 ntBASIC-1.81□□□□□ -2.7
SCN3AQ9NY46 RNU6-644P-201ENST00000391155 98 ntBASIC-1.81□□□□□ -2.7
SCN3AQ9NY46 AL035461.1-201ENST00000421490 332 ntBASIC-1.82□□□□□ -2.7
SCN3AQ9NY46 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-1.82□□□□□ -2.7
SCN3AQ9NY46 Y_RNA.20-201ENST00000362479 113 ntBASIC-1.83□□□□□ -2.7
SCN3AQ9NY46 Y_RNA.188-201ENST00000363952 111 ntBASIC-1.83□□□□□ -2.7
SCN3AQ9NY46 AC020661.2-201ENST00000560114 134 ntBASIC-1.83□□□□□ -2.7
SCN3AQ9NY46 RNU6-79P-201ENST00000362511 107 ntBASIC-1.83□□□□□ -2.7
SCN3AQ9NY46 Y_RNA.47-201ENST00000362697 108 ntBASIC-1.83□□□□□ -2.7
SCN3AQ9NY46 RNU6-915P-201ENST00000364943 103 ntBASIC-1.83□□□□□ -2.7
SCN3AQ9NY46 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.83□□□□□ -2.7
SCN3AQ9NY46 RNU6-1160P-201ENST00000384546 104 ntBASIC-1.83□□□□□ -2.7
SCN3AQ9NY46 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-1.83□□□□□ -2.7
SCN3AQ9NY46 AC104996.3-201ENST00000590718 94 ntBASIC-1.83□□□□□ -2.7
SCN3AQ9NY46 Y_RNA.10-201ENST00000362371 110 ntBASIC-1.84□□□□□ -2.7
SCN3AQ9NY46 Y_RNA.200-201ENST00000364018 102 ntBASIC-1.84□□□□□ -2.7
SCN3AQ9NY46 RNU6-1283P-201ENST00000365314 105 ntBASIC-1.84□□□□□ -2.7
SCN3AQ9NY46 SNORD58A-201ENST00000383875 65 ntBASIC-1.84□□□□□ -2.7
SCN3AQ9NY46 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.84□□□□□ -2.7
SCN3AQ9NY46 RNU6-1020P-201ENST00000363684 107 ntBASIC-1.84□□□□□ -2.7
SCN3AQ9NY46 RNU4-40P-201ENST00000364351 143 ntBASIC-1.84□□□□□ -2.7
SCN3AQ9NY46 Y_RNA.272-201ENST00000364696 102 ntBASIC-1.84□□□□□ -2.7
SCN3AQ9NY46 RNU6-696P-201ENST00000390834 107 ntBASIC-1.84□□□□□ -2.7
SCN3AQ9NY46 Y_RNA.630-201ENST00000411370 108 ntBASIC-1.84□□□□□ -2.7
SCN3AQ9NY46 Y_RNA.662-201ENST00000516028 97 ntBASIC-1.84□□□□□ -2.7
SCN3AQ9NY46 Y_RNA.400-201ENST00000383963 111 ntBASIC-1.85□□□□□ -2.71
SCN3AQ9NY46 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.85□□□□□ -2.71
SCN3AQ9NY46 AC022559.1-201ENST00000520905 205 ntBASIC-1.85□□□□□ -2.71
SCN3AQ9NY46 MIR4796-201ENST00000580742 81 ntBASIC-1.85□□□□□ -2.71
SCN3AQ9NY46 Y_RNA.95-201ENST00000363079 95 ntBASIC-1.86□□□□□ -2.71
SCN3AQ9NY46 RNU4-11P-201ENST00000365287 132 ntBASIC-1.86□□□□□ -2.71
SCN3AQ9NY46 RNU6-656P-201ENST00000516785 107 ntBASIC-1.86□□□□□ -2.71
SCN3AQ9NY46 AP001340.1-201ENST00000624405 217 ntBASIC-1.86□□□□□ -2.71
SCN3AQ9NY46 Y_RNA.8-201ENST00000362353 102 ntBASIC-1.86□□□□□ -2.71
SCN3AQ9NY46 MIR548A3-201ENST00000385297 97 ntBASIC-1.86□□□□□ -2.71
SCN3AQ9NY46 RNU6-972P-201ENST00000391208 107 ntBASIC-1.86□□□□□ -2.71
SCN3AQ9NY46 Y_RNA.778-201ENST00000620203 90 ntBASIC-1.86□□□□□ -2.71
SCN3AQ9NY46 SNORD116-10-201ENST00000363791 102 ntBASIC-1.87□□□□□ -2.71
SCN3AQ9NY46 Y_RNA.460-201ENST00000384255 102 ntBASIC-1.87□□□□□ -2.71
SCN3AQ9NY46 RPL35AP4-201ENST00000412007 102 ntBASIC-1.87□□□□□ -2.71
SCN3AQ9NY46 RNU6-1061P-201ENST00000516530 99 ntBASIC-1.87□□□□□ -2.71
SCN3AQ9NY46 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.87□□□□□ -2.71
SCN3AQ9NY46 Y_RNA.525-201ENST00000384570 113 ntBASIC-1.88□□□□□ -2.71
SCN3AQ9NY46 Y_RNA.574-201ENST00000384766 95 ntBASIC-1.88□□□□□ -2.71
SCN3AQ9NY46 MT-TM-201ENST00000387377 68 ntBASIC-1.88□□□□□ -2.71
SCN3AQ9NY46 Y_RNA.535-201ENST00000384612 99 ntBASIC-1.88□□□□□ -2.71
SCN3AQ9NY46 AC120024.2-201ENST00000576526 175 ntBASIC-1.88□□□□□ -2.71
SCN3AQ9NY46 MIR548S-201ENST00000581352 82 ntBASIC-1.88□□□□□ -2.71
SCN3AQ9NY46 Y_RNA.96-201ENST00000363092 109 ntBASIC-1.89□□□□□ -2.71
SCN3AQ9NY46 SNORD58C-201ENST00000365223 64 ntBASIC-1.89□□□□□ -2.71
SCN3AQ9NY46 Y_RNA.233-201ENST00000364407 101 ntBASIC-1.9□□□□□ -2.71
SCN3AQ9NY46 Y_RNA.420-201ENST00000384043 110 ntBASIC-1.9□□□□□ -2.71
SCN3AQ9NY46 AC103810.7-201ENST00000607821 91 ntBASIC-1.9□□□□□ -2.71
SCN3AQ9NY46 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.9□□□□□ -2.71
SCN3AQ9NY46 Y_RNA.421-201ENST00000384052 101 ntBASIC-1.9□□□□□ -2.71
SCN3AQ9NY46 Y_RNA.563-201ENST00000384707 108 ntBASIC-1.9□□□□□ -2.71
SCN3AQ9NY46 RNU6-630P-201ENST00000391258 106 ntBASIC-1.9□□□□□ -2.71
SCN3AQ9NY46 Y_RNA.606-201ENST00000410579 103 ntBASIC-1.9□□□□□ -2.71
Retrieved 100 of 98,524 protein–RNA pairs in 243.9 ms