Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AL450471.1-201ENST00000447509 127 ntBASIC-0.16□□□□□ -2.44
USP28Q96RU2 snoMBII-202.2-201ENST00000517263 86 ntBASIC-0.16□□□□□ -2.44
USP28Q96RU2 AP000676.1-201ENST00000533307 52 ntBASIC-0.16□□□□□ -2.44
USP28Q96RU2 AC140658.3-201ENST00000567603 271 ntBASIC-0.16□□□□□ -2.44
USP28Q96RU2 MIR655-201ENST00000362159 97 ntBASIC-0.17□□□□□ -2.44
USP28Q96RU2 SNORA32.1-201ENST00000364514 115 ntBASIC-0.17□□□□□ -2.44
USP28Q96RU2 Y_RNA.374-201ENST00000365606 101 ntBASIC-0.17□□□□□ -2.44
USP28Q96RU2 AC006254.2-201ENST00000603259 279 ntBASIC-0.17□□□□□ -2.44
USP28Q96RU2 RNU6-1039P-201ENST00000383931 107 ntBASIC-0.18□□□□□ -2.44
USP28Q96RU2 SNORD77.2-201ENST00000391045 68 ntBASIC-0.18□□□□□ -2.44
USP28Q96RU2 RNA5SP147-201ENST00000516493 109 ntBASIC-0.18□□□□□ -2.44
USP28Q96RU2 RNU6-624P-201ENST00000363411 107 ntBASIC-0.19□□□□□ -2.44
USP28Q96RU2 SNORD49B-201ENST00000365172 72 ntBASIC-0.19□□□□□ -2.44
USP28Q96RU2 SNORD114-12-201ENST00000365400 75 ntBASIC-0.19□□□□□ -2.44
USP28Q96RU2 RNU6-46P-201ENST00000383860 107 ntBASIC-0.19□□□□□ -2.44
USP28Q96RU2 MIR5582-201ENST00000579697 68 ntBASIC-0.19□□□□□ -2.44
USP28Q96RU2 MIR6509-201ENST00000614603 85 ntBASIC-0.19□□□□□ -2.44
USP28Q96RU2 AC006160.2-201ENST00000637708 154 ntBASIC-0.19□□□□□ -2.44
USP28Q96RU2 RNU6-1298P-201ENST00000362456 101 ntBASIC-0.2□□□□□ -2.44
USP28Q96RU2 SNORD115-25-201ENST00000362619 82 ntBASIC-0.2□□□□□ -2.44
USP28Q96RU2 SNORA63.6-201ENST00000364921 119 ntBASIC-0.2□□□□□ -2.44
USP28Q96RU2 RNU6-455P-201ENST00000384681 107 ntBASIC-0.2□□□□□ -2.44
USP28Q96RU2 Y_RNA.606-201ENST00000410579 103 ntBASIC-0.2□□□□□ -2.44
USP28Q96RU2 RNU6-274P-201ENST00000459566 107 ntBASIC-0.2□□□□□ -2.44
USP28Q96RU2 AC021146.9-201ENST00000512503 156 ntBASIC-0.2□□□□□ -2.44
USP28Q96RU2 Y_RNA.681-201ENST00000516445 113 ntBASIC-0.2□□□□□ -2.44
USP28Q96RU2 Y_RNA.694-201ENST00000516677 117 ntBASIC-0.2□□□□□ -2.44
USP28Q96RU2 RNU6-478P-201ENST00000363904 110 ntBASIC-0.21□□□□□ -2.44
USP28Q96RU2 RNU6-340P-201ENST00000364005 107 ntBASIC-0.21□□□□□ -2.44
USP28Q96RU2 RNU6-260P-201ENST00000384092 107 ntBASIC-0.21□□□□□ -2.44
USP28Q96RU2 MIR9-2-201ENST00000384838 87 ntBASIC-0.21□□□□□ -2.44
USP28Q96RU2 RNU6-592P-201ENST00000411333 103 ntBASIC-0.21□□□□□ -2.44
USP28Q96RU2 AL691482.2-201ENST00000457453 84 ntBASIC-0.21□□□□□ -2.44
USP28Q96RU2 MIR3657-201ENST00000584818 117 ntBASIC-0.21□□□□□ -2.44
USP28Q96RU2 MIR6759-201ENST00000638110 65 ntBASIC-0.21□□□□□ -2.44
USP28Q96RU2 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.22□□□□□ -2.44
USP28Q96RU2 AC104692.1-201ENST00000472406 90 ntBASIC-0.22□□□□□ -2.44
USP28Q96RU2 MIR494-201ENST00000349529 81 ntBASIC-0.23□□□□□ -2.45
USP28Q96RU2 RNU6-502P-201ENST00000362419 108 ntBASIC-0.23□□□□□ -2.45
USP28Q96RU2 Y_RNA.68-201ENST00000362881 102 ntBASIC-0.23□□□□□ -2.45
USP28Q96RU2 RNY1P1-201ENST00000364372 112 ntBASIC-0.23□□□□□ -2.45
USP28Q96RU2 RNU6-294P-201ENST00000364999 102 ntBASIC-0.23□□□□□ -2.45
USP28Q96RU2 MIR214-201ENST00000385214 110 ntBASIC-0.23□□□□□ -2.45
USP28Q96RU2 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-0.23□□□□□ -2.45
USP28Q96RU2 IGLL4P-201ENST00000614590 133 ntBASIC-0.23□□□□□ -2.45
USP28Q96RU2 SNORA18.1-201ENST00000363418 128 ntBASIC-0.24□□□□□ -2.45
USP28Q96RU2 RNU6-337P-201ENST00000391243 106 ntBASIC-0.24□□□□□ -2.45
USP28Q96RU2 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-0.24□□□□□ -2.45
USP28Q96RU2 SNORD4A-201ENST00000459174 72 ntBASIC-0.24□□□□□ -2.45
USP28Q96RU2 MIR5588-201ENST00000581890 63 ntBASIC-0.24□□□□□ -2.45
USP28Q96RU2 AC090617.8-201ENST00000623339 167 ntBASIC-0.24□□□□□ -2.45
USP28Q96RU2 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-0.24□□□□□ -2.45
USP28Q96RU2 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.25□□□□□ -2.45
USP28Q96RU2 RNU6-979P-201ENST00000383896 107 ntBASIC-0.25□□□□□ -2.45
USP28Q96RU2 Y_RNA.532-201ENST00000384590 113 ntBASIC-0.25□□□□□ -2.45
USP28Q96RU2 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.25□□□□□ -2.45
USP28Q96RU2 YWHAEP3-201ENST00000582767 121 ntBASIC-0.25□□□□□ -2.45
USP28Q96RU2 MIR6773-201ENST00000612812 74 ntBASIC-0.25□□□□□ -2.45
USP28Q96RU2 uc_338.36-201ENST00000622331 158 ntBASIC-0.25□□□□□ -2.45
USP28Q96RU2 MIR1295B-201ENST00000636144 60 ntBASIC-0.25□□□□□ -2.45
USP28Q96RU2 SNORD114-31-201ENST00000363219 75 ntBASIC-0.26□□□□□ -2.45
USP28Q96RU2 AC022137.1-201ENST00000483735 151 ntBASIC-0.26□□□□□ -2.45
USP28Q96RU2 RNU6-330P-201ENST00000363015 107 ntBASIC-0.27□□□□□ -2.45
USP28Q96RU2 SNORA2.1-201ENST00000363089 137 ntBASIC-0.27□□□□□ -2.45
USP28Q96RU2 Y_RNA.369-201ENST00000365568 117 ntBASIC-0.27□□□□□ -2.45
USP28Q96RU2 SNORD56B-201ENST00000384713 71 ntBASIC-0.27□□□□□ -2.45
USP28Q96RU2 SNORD2-201ENST00000459163 69 ntBASIC-0.27□□□□□ -2.45
USP28Q96RU2 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-0.27□□□□□ -2.45
USP28Q96RU2 RNU6-557P-201ENST00000516842 110 ntBASIC-0.27□□□□□ -2.45
USP28Q96RU2 IGLVI-20-201ENST00000519296 130 ntBASIC-0.27□□□□□ -2.45
USP28Q96RU2 MIR4802-201ENST00000581881 80 ntBASIC-0.27□□□□□ -2.45
USP28Q96RU2 AL590491.3-201ENST00000610731 82 ntBASIC-0.27□□□□□ -2.45
USP28Q96RU2 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.28□□□□□ -2.45
USP28Q96RU2 Y_RNA.264-201ENST00000364665 102 ntBASIC-0.28□□□□□ -2.45
USP28Q96RU2 SNORA33.1-201ENST00000364957 130 ntBASIC-0.28□□□□□ -2.45
USP28Q96RU2 RNU6-900P-201ENST00000384498 102 ntBASIC-0.28□□□□□ -2.45
USP28Q96RU2 RNU6-129P-201ENST00000391022 107 ntBASIC-0.28□□□□□ -2.45
USP28Q96RU2 Y_RNA.607-201ENST00000410597 98 ntBASIC-0.28□□□□□ -2.45
USP28Q96RU2 RNA5SP170-201ENST00000517150 101 ntBASIC-0.28□□□□□ -2.45
USP28Q96RU2 MIRLET7A1-201ENST00000362295 80 ntBASIC-0.29□□□□□ -2.46
USP28Q96RU2 Y_RNA.219-201ENST00000364232 113 ntBASIC-0.29□□□□□ -2.46
USP28Q96RU2 MIRLET7B-201ENST00000385140 83 ntBASIC-0.29□□□□□ -2.46
USP28Q96RU2 RNU7-55P-201ENST00000459426 62 ntBASIC-0.29□□□□□ -2.46
USP28Q96RU2 MIR5589-201ENST00000579442 60 ntBASIC-0.29□□□□□ -2.46
USP28Q96RU2 MIR3666-201ENST00000607845 111 ntBASIC-0.29□□□□□ -2.46
USP28Q96RU2 RNU6-681P-201ENST00000364012 104 ntBASIC-0.3□□□□□ -2.46
USP28Q96RU2 RNU6-686P-201ENST00000364839 107 ntBASIC-0.3□□□□□ -2.46
USP28Q96RU2 Y_RNA.316-201ENST00000365118 111 ntBASIC-0.3□□□□□ -2.46
USP28Q96RU2 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.3□□□□□ -2.46
USP28Q96RU2 AL445193.1-201ENST00000441183 141 ntBASIC-0.3□□□□□ -2.46
USP28Q96RU2 RNU6-752P-201ENST00000516376 102 ntBASIC-0.3□□□□□ -2.46
USP28Q96RU2 MIR4636-201ENST00000582271 80 ntBASIC-0.3□□□□□ -2.46
USP28Q96RU2 AC062037.1-201ENST00000605302 128 ntBASIC-0.3□□□□□ -2.46
USP28Q96RU2 U6.96-201ENST00000636425 70 ntBASIC-0.3□□□□□ -2.46
USP28Q96RU2 SNORD114-11-201ENST00000363738 75 ntBASIC-0.31□□□□□ -2.46
USP28Q96RU2 Y_RNA.426-201ENST00000384068 113 ntBASIC-0.31□□□□□ -2.46
USP28Q96RU2 MIR450A2-201ENST00000385022 100 ntBASIC-0.31□□□□□ -2.46
USP28Q96RU2 RNA5SP300-201ENST00000391197 107 ntBASIC-0.31□□□□□ -2.46
USP28Q96RU2 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.31□□□□□ -2.46
USP28Q96RU2 MIR4484-201ENST00000582855 83 ntBASIC-0.31□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 171.3 ms