Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RNA5SP325-201ENST00000363756 130 ntBASIC0.44□□□□□ -2.34
CCDC140Q96MF4 Y_RNA.681-201ENST00000516445 113 ntBASIC0.44□□□□□ -2.34
CCDC140Q96MF4 MIR3134-201ENST00000579433 74 ntBASIC0.44□□□□□ -2.34
CCDC140Q96MF4 MIR3657-201ENST00000584818 117 ntBASIC0.44□□□□□ -2.34
CCDC140Q96MF4 SNORD45.1-201ENST00000363181 77 ntBASIC0.43□□□□□ -2.34
CCDC140Q96MF4 SNORD114-23-201ENST00000363536 72 ntBASIC0.43□□□□□ -2.34
CCDC140Q96MF4 MIR193B-201ENST00000384907 83 ntBASIC0.43□□□□□ -2.34
CCDC140Q96MF4 snoU13.13-201ENST00000458842 104 ntBASIC0.43□□□□□ -2.34
CCDC140Q96MF4 RNU7-188P-201ENST00000517063 64 ntBASIC0.43□□□□□ -2.34
CCDC140Q96MF4 uc_338.17-201ENST00000619633 179 ntBASIC0.43□□□□□ -2.34
CCDC140Q96MF4 MIR4662A-201ENST00000637499 67 ntBASIC0.43□□□□□ -2.34
CCDC140Q96MF4 AC090625.1-201ENST00000357130 210 ntBASIC0.42□□□□□ -2.34
CCDC140Q96MF4 MIR1273G-201ENST00000577677 100 ntBASIC0.42□□□□□ -2.34
CCDC140Q96MF4 MIR3925-201ENST00000584674 77 ntBASIC0.42□□□□□ -2.34
CCDC140Q96MF4 FAS-AS1.1-201ENST00000615327 126 ntBASIC0.42□□□□□ -2.34
CCDC140Q96MF4 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.41□□□□□ -2.34
CCDC140Q96MF4 MIR20A-201ENST00000362279 71 ntBASIC0.41□□□□□ -2.34
CCDC140Q96MF4 MIR582-201ENST00000365731 98 ntBASIC0.41□□□□□ -2.34
CCDC140Q96MF4 MIR643-201ENST00000385267 97 ntBASIC0.41□□□□□ -2.34
CCDC140Q96MF4 RNU6-127P-201ENST00000390897 107 ntBASIC0.41□□□□□ -2.34
CCDC140Q96MF4 AC069113.3-201ENST00000521019 150 ntBASIC0.41□□□□□ -2.34
CCDC140Q96MF4 MIR4711-201ENST00000578274 70 ntBASIC0.41□□□□□ -2.34
CCDC140Q96MF4 MIR5087-201ENST00000635826 76 ntBASIC0.41□□□□□ -2.34
CCDC140Q96MF4 AC010487.4-201ENST00000637027 61 ntBASIC0.41□□□□□ -2.34
CCDC140Q96MF4 RNA5SP499-201ENST00000363982 119 ntBASIC0.4□□□□□ -2.35
CCDC140Q96MF4 SNORD114-29-201ENST00000364819 70 ntBASIC0.4□□□□□ -2.35
CCDC140Q96MF4 AC243829.3-201ENST00000622177 108 ntBASIC0.4□□□□□ -2.35
CCDC140Q96MF4 RNU6-776P-201ENST00000364403 104 ntBASIC0.39□□□□□ -2.35
CCDC140Q96MF4 RNU6-1022P-201ENST00000365049 104 ntBASIC0.39□□□□□ -2.35
CCDC140Q96MF4 RNA5SP193-201ENST00000410353 107 ntBASIC0.39□□□□□ -2.35
CCDC140Q96MF4 SCARNA11.2-201ENST00000517183 154 ntBASIC0.39□□□□□ -2.35
CCDC140Q96MF4 RNU6-1327P-201ENST00000365302 105 ntBASIC0.38□□□□□ -2.35
CCDC140Q96MF4 AL157398.1-201ENST00000452981 186 ntBASIC0.38□□□□□ -2.35
CCDC140Q96MF4 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.38□□□□□ -2.35
CCDC140Q96MF4 SNORA50A-201ENST00000384225 134 ntBASIC0.37□□□□□ -2.35
CCDC140Q96MF4 RNU6-604P-201ENST00000390917 100 ntBASIC0.36□□□□□ -2.35
CCDC140Q96MF4 MIR548E-201ENST00000408287 88 ntBASIC0.36□□□□□ -2.35
CCDC140Q96MF4 AC114737.2-201ENST00000421583 173 ntBASIC0.36□□□□□ -2.35
CCDC140Q96MF4 AC244090.1-201ENST00000441884 93 ntBASIC0.36□□□□□ -2.35
CCDC140Q96MF4 AC021146.9-201ENST00000512503 156 ntBASIC0.36□□□□□ -2.35
CCDC140Q96MF4 RNA5SP134-201ENST00000516492 96 ntBASIC0.36□□□□□ -2.35
CCDC140Q96MF4 SNORA40.17-201ENST00000517256 115 ntBASIC0.36□□□□□ -2.35
CCDC140Q96MF4 MIR924-201ENST00000638017 53 ntBASIC0.36□□□□□ -2.35
CCDC140Q96MF4 SNORA2.1-201ENST00000363089 137 ntBASIC0.35□□□□□ -2.35
CCDC140Q96MF4 RNU6-411P-201ENST00000384451 107 ntBASIC0.35□□□□□ -2.35
CCDC140Q96MF4 MIR154-201ENST00000385243 84 ntBASIC0.35□□□□□ -2.35
CCDC140Q96MF4 AC108740.1-201ENST00000498629 225 ntBASIC0.35□□□□□ -2.35
CCDC140Q96MF4 RNU6-1241P-201ENST00000384536 107 ntBASIC0.34□□□□□ -2.36
CCDC140Q96MF4 AC243829.6-201ENST00000612652 106 ntBASIC0.34□□□□□ -2.36
CCDC140Q96MF4 RN7SL660P-201ENST00000614852 299 ntBASIC0.34□□□□□ -2.36
CCDC140Q96MF4 RNU6-782P-201ENST00000516852 104 ntBASIC0.33□□□□□ -2.36
CCDC140Q96MF4 RNU6-175P-201ENST00000516896 107 ntBASIC0.33□□□□□ -2.36
CCDC140Q96MF4 SNORA63.6-201ENST00000364921 119 ntBASIC0.32□□□□□ -2.36
CCDC140Q96MF4 SNORA75.1-201ENST00000391130 148 ntBASIC0.32□□□□□ -2.36
CCDC140Q96MF4 RNU6-587P-201ENST00000391282 106 ntBASIC0.32□□□□□ -2.36
CCDC140Q96MF4 RNA5SP457-201ENST00000363657 124 ntBASIC0.31□□□□□ -2.36
CCDC140Q96MF4 RNU6-1036P-201ENST00000383959 104 ntBASIC0.31□□□□□ -2.36
CCDC140Q96MF4 SNORD45A-201ENST00000384512 84 ntBASIC0.31□□□□□ -2.36
CCDC140Q96MF4 Y_RNA.545-201ENST00000384652 105 ntBASIC0.31□□□□□ -2.36
CCDC140Q96MF4 Y_RNA.565-201ENST00000384719 101 ntBASIC0.31□□□□□ -2.36
CCDC140Q96MF4 MIR4315-1-201ENST00000636800 73 ntBASIC0.31□□□□□ -2.36
CCDC140Q96MF4 MIR4315-2-201ENST00000640925 73 ntBASIC0.31□□□□□ -2.36
CCDC140Q96MF4 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.3□□□□□ -2.36
CCDC140Q96MF4 Y_RNA.115-201ENST00000363272 98 ntBASIC0.3□□□□□ -2.36
CCDC140Q96MF4 SNORD115-22-201ENST00000364456 82 ntBASIC0.3□□□□□ -2.36
CCDC140Q96MF4 VTRNA1-3-201ENST00000365645 89 ntBASIC0.3□□□□□ -2.36
CCDC140Q96MF4 RNU6-687P-201ENST00000516443 89 ntBASIC0.3□□□□□ -2.36
CCDC140Q96MF4 RNU6-1015P-201ENST00000517121 99 ntBASIC0.3□□□□□ -2.36
CCDC140Q96MF4 MIR8087-201ENST00000612745 78 ntBASIC0.3□□□□□ -2.36
CCDC140Q96MF4 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.3□□□□□ -2.36
CCDC140Q96MF4 MIR330-201ENST00000362196 94 ntBASIC0.29□□□□□ -2.36
CCDC140Q96MF4 MIR876-201ENST00000401147 81 ntBASIC0.29□□□□□ -2.36
CCDC140Q96MF4 RNA5SP330-201ENST00000517096 96 ntBASIC0.29□□□□□ -2.36
CCDC140Q96MF4 MIR8053-201ENST00000613344 75 ntBASIC0.29□□□□□ -2.36
CCDC140Q96MF4 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.29□□□□□ -2.36
CCDC140Q96MF4 MIR593-201ENST00000384856 100 ntBASIC0.28□□□□□ -2.36
CCDC140Q96MF4 RNU6-982P-201ENST00000516216 102 ntBASIC0.28□□□□□ -2.36
CCDC140Q96MF4 Y_RNA.250-201ENST00000364542 110 ntBASIC0.27□□□□□ -2.37
CCDC140Q96MF4 RNU6-1162P-201ENST00000384443 104 ntBASIC0.27□□□□□ -2.37
CCDC140Q96MF4 MIR106A-201ENST00000384870 81 ntBASIC0.27□□□□□ -2.37
CCDC140Q96MF4 AC104408.1-201ENST00000605241 170 ntBASIC0.27□□□□□ -2.37
CCDC140Q96MF4 RNA5SP214-201ENST00000363378 118 ntBASIC0.26□□□□□ -2.37
CCDC140Q96MF4 RNU6-895P-201ENST00000384125 103 ntBASIC0.26□□□□□ -2.37
CCDC140Q96MF4 MIR610-201ENST00000385139 96 ntBASIC0.26□□□□□ -2.37
CCDC140Q96MF4 MIR1197-201ENST00000408818 88 ntBASIC0.26□□□□□ -2.37
CCDC140Q96MF4 RNA5SP163-201ENST00000410304 99 ntBASIC0.26□□□□□ -2.37
CCDC140Q96MF4 U6.96-201ENST00000636425 70 ntBASIC0.26□□□□□ -2.37
CCDC140Q96MF4 Y_RNA.30-201ENST00000362572 97 ntBASIC0.25□□□□□ -2.37
CCDC140Q96MF4 SNORD113.1-201ENST00000363280 73 ntBASIC0.25□□□□□ -2.37
CCDC140Q96MF4 RNU6-645P-201ENST00000364649 106 ntBASIC0.25□□□□□ -2.37
CCDC140Q96MF4 SNORA15B-2-201ENST00000384058 135 ntBASIC0.25□□□□□ -2.37
CCDC140Q96MF4 SNORA15B-1-201ENST00000384334 135 ntBASIC0.25□□□□□ -2.37
CCDC140Q96MF4 Y_RNA.633-201ENST00000459107 95 ntBASIC0.25□□□□□ -2.37
CCDC140Q96MF4 SNORA62.5-201ENST00000516634 120 ntBASIC0.25□□□□□ -2.37
CCDC140Q96MF4 AL109933.3-201ENST00000619095 188 ntBASIC0.25□□□□□ -2.37
CCDC140Q96MF4 SNORA33.1-201ENST00000364957 130 ntBASIC0.24□□□□□ -2.37
CCDC140Q96MF4 SNORD115-31-201ENST00000365318 82 ntBASIC0.24□□□□□ -2.37
CCDC140Q96MF4 Y_RNA.374-201ENST00000365606 101 ntBASIC0.24□□□□□ -2.37
CCDC140Q96MF4 SNORD2-201ENST00000459163 69 ntBASIC0.24□□□□□ -2.37
CCDC140Q96MF4 RNU6-523P-201ENST00000516304 54 ntBASIC0.24□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 172.1 ms