Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 Y_RNA.118-201ENST00000363300 101 ntBASIC0.03□□□□□ -2.4
CLRN3Q8NCR9 SNORA26.2-201ENST00000390922 122 ntBASIC0.03□□□□□ -2.4
CLRN3Q8NCR9 MIR1302-4-201ENST00000408701 150 ntBASIC0.03□□□□□ -2.4
CLRN3Q8NCR9 RNU7-165P-201ENST00000458864 60 ntBASIC0.03□□□□□ -2.4
CLRN3Q8NCR9 RNA5SP98-201ENST00000363158 137 ntBASIC0.02□□□□□ -2.41
CLRN3Q8NCR9 RNU6-478P-201ENST00000363904 110 ntBASIC0.02□□□□□ -2.41
CLRN3Q8NCR9 Y_RNA.316-201ENST00000365118 111 ntBASIC0.02□□□□□ -2.41
CLRN3Q8NCR9 MIR548E-201ENST00000408287 88 ntBASIC0.02□□□□□ -2.41
CLRN3Q8NCR9 RNU6-303P-201ENST00000517091 106 ntBASIC0.02□□□□□ -2.41
CLRN3Q8NCR9 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.02□□□□□ -2.41
CLRN3Q8NCR9 Y_RNA.36-201ENST00000362602 112 ntBASIC0.01□□□□□ -2.41
CLRN3Q8NCR9 SNORA63.6-201ENST00000364921 119 ntBASIC0.01□□□□□ -2.41
CLRN3Q8NCR9 RNU6-1152P-201ENST00000384576 107 ntBASIC0.01□□□□□ -2.41
CLRN3Q8NCR9 MIR1273G-201ENST00000577677 100 ntBASIC0.01□□□□□ -2.41
CLRN3Q8NCR9 MIR4514-201ENST00000581410 57 ntBASIC0.01□□□□□ -2.41
CLRN3Q8NCR9 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.01□□□□□ -2.41
CLRN3Q8NCR9 MIR1297-201ENST00000637311 77 ntBASIC0.01□□□□□ -2.41
CLRN3Q8NCR9 MIR330-201ENST00000362196 94 ntBASIC0□□□□□ -2.41
CLRN3Q8NCR9 RNU6-260P-201ENST00000384092 107 ntBASIC0□□□□□ -2.41
CLRN3Q8NCR9 MIR7-2-201ENST00000384970 110 ntBASIC0□□□□□ -2.41
CLRN3Q8NCR9 AC104692.1-201ENST00000472406 90 ntBASIC0□□□□□ -2.41
CLRN3Q8NCR9 MIR4290-201ENST00000583807 95 ntBASIC0□□□□□ -2.41
CLRN3Q8NCR9 MIR4768-201ENST00000585270 74 ntBASIC0□□□□□ -2.41
CLRN3Q8NCR9 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.01□□□□□ -2.41
CLRN3Q8NCR9 MIR582-201ENST00000365731 98 ntBASIC-0.01□□□□□ -2.41
CLRN3Q8NCR9 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.01□□□□□ -2.41
CLRN3Q8NCR9 RNU6-807P-201ENST00000516805 107 ntBASIC-0.01□□□□□ -2.41
CLRN3Q8NCR9 MIR4666B-201ENST00000578142 81 ntBASIC-0.01□□□□□ -2.41
CLRN3Q8NCR9 MIR489-201ENST00000384923 84 ntBASIC-0.02□□□□□ -2.41
CLRN3Q8NCR9 RNY4P29-201ENST00000410801 97 ntBASIC-0.02□□□□□ -2.41
CLRN3Q8NCR9 MIR1245B-201ENST00000636115 69 ntBASIC-0.02□□□□□ -2.41
CLRN3Q8NCR9 SNORA2.1-201ENST00000363089 137 ntBASIC-0.03□□□□□ -2.41
CLRN3Q8NCR9 RNU6-990P-201ENST00000364385 104 ntBASIC-0.03□□□□□ -2.41
CLRN3Q8NCR9 MIR371B-201ENST00000638082 66 ntBASIC-0.03□□□□□ -2.41
CLRN3Q8NCR9 RNU6-1094P-201ENST00000362416 104 ntBASIC-0.04□□□□□ -2.42
CLRN3Q8NCR9 AC021146.9-201ENST00000512503 156 ntBASIC-0.04□□□□□ -2.42
CLRN3Q8NCR9 MIR3657-201ENST00000584818 117 ntBASIC-0.04□□□□□ -2.42
CLRN3Q8NCR9 MIR8087-201ENST00000612745 78 ntBASIC-0.04□□□□□ -2.42
CLRN3Q8NCR9 MIR6718-201ENST00000616153 80 ntBASIC-0.04□□□□□ -2.42
CLRN3Q8NCR9 MIR1295B-201ENST00000636144 60 ntBASIC-0.04□□□□□ -2.42
CLRN3Q8NCR9 RNU6-46P-201ENST00000383860 107 ntBASIC-0.05□□□□□ -2.42
CLRN3Q8NCR9 RNA5SP63-201ENST00000391225 112 ntBASIC-0.05□□□□□ -2.42
CLRN3Q8NCR9 SNORD114-16-201ENST00000363044 70 ntBASIC-0.06□□□□□ -2.42
CLRN3Q8NCR9 MIR203A-201ENST00000384836 110 ntBASIC-0.06□□□□□ -2.42
CLRN3Q8NCR9 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.06□□□□□ -2.42
CLRN3Q8NCR9 MIR4667-201ENST00000578933 66 ntBASIC-0.06□□□□□ -2.42
CLRN3Q8NCR9 MIR3202-2-201ENST00000635980 79 ntBASIC-0.06□□□□□ -2.42
CLRN3Q8NCR9 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.06□□□□□ -2.42
CLRN3Q8NCR9 RNU6-929P-201ENST00000384429 107 ntBASIC-0.07□□□□□ -2.42
CLRN3Q8NCR9 AC074348.1-201ENST00000426503 132 ntBASIC-0.07□□□□□ -2.42
CLRN3Q8NCR9 MIR4712-201ENST00000583750 82 ntBASIC-0.07□□□□□ -2.42
CLRN3Q8NCR9 MIR4679-1-201ENST00000637619 75 ntBASIC-0.07□□□□□ -2.42
CLRN3Q8NCR9 SNORD115-25-201ENST00000362619 82 ntBASIC-0.08□□□□□ -2.42
CLRN3Q8NCR9 Y_RNA.313-201ENST00000365095 103 ntBASIC-0.08□□□□□ -2.42
CLRN3Q8NCR9 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-0.08□□□□□ -2.42
CLRN3Q8NCR9 SNORA49-201ENST00000386157 136 ntBASIC-0.09□□□□□ -2.42
CLRN3Q8NCR9 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.1□□□□□ -2.43
CLRN3Q8NCR9 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.1□□□□□ -2.43
CLRN3Q8NCR9 MIR5190-201ENST00000581537 80 ntBASIC-0.1□□□□□ -2.43
CLRN3Q8NCR9 MIR3675-201ENST00000583661 73 ntBASIC-0.1□□□□□ -2.43
CLRN3Q8NCR9 Y_RNA.388-201ENST00000383919 113 ntBASIC-0.11□□□□□ -2.43
CLRN3Q8NCR9 SNORA8.1-201ENST00000384250 140 ntBASIC-0.11□□□□□ -2.43
CLRN3Q8NCR9 RNA5SP173-201ENST00000364857 136 ntBASIC-0.12□□□□□ -2.43
CLRN3Q8NCR9 RNA5SP147-201ENST00000516493 109 ntBASIC-0.12□□□□□ -2.43
CLRN3Q8NCR9 AP000676.1-201ENST00000533307 52 ntBASIC-0.12□□□□□ -2.43
CLRN3Q8NCR9 Y_RNA.219-201ENST00000364232 113 ntBASIC-0.13□□□□□ -2.43
CLRN3Q8NCR9 MIR1197-201ENST00000408818 88 ntBASIC-0.13□□□□□ -2.43
CLRN3Q8NCR9 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.13□□□□□ -2.43
CLRN3Q8NCR9 RNA5SP480-201ENST00000516840 109 ntBASIC-0.13□□□□□ -2.43
CLRN3Q8NCR9 SNORA40.17-201ENST00000517256 115 ntBASIC-0.13□□□□□ -2.43
CLRN3Q8NCR9 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-0.13□□□□□ -2.43
CLRN3Q8NCR9 Y_RNA.532-201ENST00000384590 113 ntBASIC-0.14□□□□□ -2.43
CLRN3Q8NCR9 snoU13.13-201ENST00000458842 104 ntBASIC-0.14□□□□□ -2.43
CLRN3Q8NCR9 RNA5SP330-201ENST00000517096 96 ntBASIC-0.14□□□□□ -2.43
CLRN3Q8NCR9 MIR6507-201ENST00000613630 70 ntBASIC-0.14□□□□□ -2.43
CLRN3Q8NCR9 SNORA18.1-201ENST00000363418 128 ntBASIC-0.15□□□□□ -2.43
CLRN3Q8NCR9 RNU6-787P-201ENST00000384032 107 ntBASIC-0.15□□□□□ -2.43
CLRN3Q8NCR9 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.15□□□□□ -2.43
CLRN3Q8NCR9 Y_RNA.540-201ENST00000384638 111 ntBASIC-0.15□□□□□ -2.43
CLRN3Q8NCR9 MIR4484-201ENST00000582855 83 ntBASIC-0.15□□□□□ -2.43
CLRN3Q8NCR9 U6.96-201ENST00000636425 70 ntBASIC-0.16□□□□□ -2.44
CLRN3Q8NCR9 Y_RNA.94-201ENST00000363068 106 ntBASIC-0.17□□□□□ -2.44
CLRN3Q8NCR9 RNA5SP457-201ENST00000363657 124 ntBASIC-0.17□□□□□ -2.44
CLRN3Q8NCR9 SNORD49B-201ENST00000365172 72 ntBASIC-0.17□□□□□ -2.44
CLRN3Q8NCR9 RNU6-573P-201ENST00000383938 106 ntBASIC-0.17□□□□□ -2.44
CLRN3Q8NCR9 AC145423.2-201ENST00000610631 239 ntBASIC-0.17□□□□□ -2.44
CLRN3Q8NCR9 MIR6739-201ENST00000622461 75 ntBASIC-0.17□□□□□ -2.44
CLRN3Q8NCR9 RNU6-330P-201ENST00000363015 107 ntBASIC-0.18□□□□□ -2.44
CLRN3Q8NCR9 Y_RNA.205-201ENST00000364128 113 ntBASIC-0.18□□□□□ -2.44
CLRN3Q8NCR9 RNU6-455P-201ENST00000384681 107 ntBASIC-0.18□□□□□ -2.44
CLRN3Q8NCR9 AC244250.2-201ENST00000418731 148 ntBASIC-0.18□□□□□ -2.44
CLRN3Q8NCR9 MIR6773-201ENST00000612812 74 ntBASIC-0.18□□□□□ -2.44
CLRN3Q8NCR9 MIR7111-201ENST00000619751 72 ntBASIC-0.18□□□□□ -2.44
CLRN3Q8NCR9 RNU6-502P-201ENST00000362419 108 ntBASIC-0.19□□□□□ -2.44
CLRN3Q8NCR9 RNU6-900P-201ENST00000384498 102 ntBASIC-0.19□□□□□ -2.44
CLRN3Q8NCR9 MIR521-2-201ENST00000384818 87 ntBASIC-0.19□□□□□ -2.44
CLRN3Q8NCR9 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-0.2□□□□□ -2.44
CLRN3Q8NCR9 MIR4263-201ENST00000584745 83 ntBASIC-0.2□□□□□ -2.44
CLRN3Q8NCR9 Y_RNA.115-201ENST00000363272 98 ntBASIC-0.21□□□□□ -2.44
CLRN3Q8NCR9 RNU6-302P-201ENST00000365249 107 ntBASIC-0.21□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 173.1 ms