Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AL118496.2-201ENST00000448300 230 ntBASIC-1.67□□□□□ -2.68
FOXA3P55318 RNU6-983P-201ENST00000516004 103 ntBASIC-1.67□□□□□ -2.68
FOXA3P55318 RNU6-656P-201ENST00000516785 107 ntBASIC-1.67□□□□□ -2.68
FOXA3P55318 RNU6-608P-201ENST00000383927 104 ntBASIC-1.68□□□□□ -2.68
FOXA3P55318 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.68□□□□□ -2.68
FOXA3P55318 SNORD58.1-201ENST00000391313 66 ntBASIC-1.68□□□□□ -2.68
FOXA3P55318 MIR1468-201ENST00000410600 86 ntBASIC-1.68□□□□□ -2.68
FOXA3P55318 MTND5P20-201ENST00000448677 143 ntBASIC-1.68□□□□□ -2.68
FOXA3P55318 RNU6-1061P-201ENST00000516530 99 ntBASIC-1.68□□□□□ -2.68
FOXA3P55318 RNU6-158P-201ENST00000517104 100 ntBASIC-1.68□□□□□ -2.68
FOXA3P55318 Y_RNA.804-201ENST00000615262 101 ntBASIC-1.68□□□□□ -2.68
FOXA3P55318 AC141273.2-201ENST00000618989 130 ntBASIC-1.68□□□□□ -2.68
FOXA3P55318 AL627230.5-201ENST00000619807 58 ntBASIC-1.68□□□□□ -2.68
FOXA3P55318 AL035470.1-201ENST00000622571 220 ntBASIC-1.68□□□□□ -2.68
FOXA3P55318 RNU6-458P-201ENST00000384179 107 ntBASIC-1.69□□□□□ -2.68
FOXA3P55318 RNU6-1113P-201ENST00000384348 107 ntBASIC-1.69□□□□□ -2.68
FOXA3P55318 MT-TD-201ENST00000387419 68 ntBASIC-1.69□□□□□ -2.68
FOXA3P55318 RNU6-695P-201ENST00000391157 104 ntBASIC-1.69□□□□□ -2.68
FOXA3P55318 Y_RNA.619-201ENST00000410951 90 ntBASIC-1.69□□□□□ -2.68
FOXA3P55318 RNU6-795P-201ENST00000516323 103 ntBASIC-1.69□□□□□ -2.68
FOXA3P55318 MIR4796-201ENST00000580742 81 ntBASIC-1.69□□□□□ -2.68
FOXA3P55318 MIR4777-201ENST00000583710 86 ntBASIC-1.69□□□□□ -2.68
FOXA3P55318 U6.58-201ENST00000613107 107 ntBASIC-1.69□□□□□ -2.68
FOXA3P55318 Y_RNA.20-201ENST00000362479 113 ntBASIC-1.7□□□□□ -2.68
FOXA3P55318 Y_RNA.202-201ENST00000364083 110 ntBASIC-1.7□□□□□ -2.68
FOXA3P55318 RNU6-1283P-201ENST00000365314 105 ntBASIC-1.7□□□□□ -2.68
FOXA3P55318 RNU6-639P-201ENST00000384074 107 ntBASIC-1.7□□□□□ -2.68
FOXA3P55318 Y_RNA.574-201ENST00000384766 95 ntBASIC-1.7□□□□□ -2.68
FOXA3P55318 RNU6-696P-201ENST00000390834 107 ntBASIC-1.7□□□□□ -2.68
FOXA3P55318 Y_RNA.606-201ENST00000410579 103 ntBASIC-1.7□□□□□ -2.68
FOXA3P55318 RNA5SP272-201ENST00000516095 111 ntBASIC-1.7□□□□□ -2.68
FOXA3P55318 RNU4-71P-201ENST00000516258 113 ntBASIC-1.7□□□□□ -2.68
FOXA3P55318 RNU6-752P-201ENST00000516376 102 ntBASIC-1.7□□□□□ -2.68
FOXA3P55318 RNU6-807P-201ENST00000516805 107 ntBASIC-1.7□□□□□ -2.68
FOXA3P55318 Y_RNA.702-201ENST00000516843 96 ntBASIC-1.7□□□□□ -2.68
FOXA3P55318 Y_RNA.11-201ENST00000362375 109 ntBASIC-1.71□□□□□ -2.68
FOXA3P55318 SNORD58C-201ENST00000365223 64 ntBASIC-1.71□□□□□ -2.68
FOXA3P55318 MIR513C-201ENST00000401352 84 ntBASIC-1.71□□□□□ -2.68
FOXA3P55318 AL450471.1-201ENST00000447509 127 ntBASIC-1.71□□□□□ -2.68
FOXA3P55318 AC108019.1-201ENST00000512540 175 ntBASIC-1.71□□□□□ -2.68
FOXA3P55318 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.71□□□□□ -2.68
FOXA3P55318 AC020661.2-201ENST00000560114 134 ntBASIC-1.71□□□□□ -2.68
FOXA3P55318 AP001340.1-201ENST00000624405 217 ntBASIC-1.71□□□□□ -2.68
FOXA3P55318 Y_RNA.288-201ENST00000364854 92 ntBASIC-1.72□□□□□ -2.68
FOXA3P55318 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.72□□□□□ -2.68
FOXA3P55318 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.72□□□□□ -2.68
FOXA3P55318 MIR520D-201ENST00000385002 87 ntBASIC-1.72□□□□□ -2.68
FOXA3P55318 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.72□□□□□ -2.68
FOXA3P55318 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-1.72□□□□□ -2.68
FOXA3P55318 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.72□□□□□ -2.68
FOXA3P55318 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.72□□□□□ -2.68
FOXA3P55318 Y_RNA.200-201ENST00000364018 102 ntBASIC-1.73□□□□□ -2.69
FOXA3P55318 AC120024.2-201ENST00000576526 175 ntBASIC-1.73□□□□□ -2.69
FOXA3P55318 AC012531.4-201ENST00000616509 177 ntBASIC-1.73□□□□□ -2.69
FOXA3P55318 RNU6-340P-201ENST00000364005 107 ntBASIC-1.74□□□□□ -2.69
FOXA3P55318 Y_RNA.272-201ENST00000364696 102 ntBASIC-1.74□□□□□ -2.69
FOXA3P55318 SNORD58A-201ENST00000383875 65 ntBASIC-1.74□□□□□ -2.69
FOXA3P55318 Y_RNA.420-201ENST00000384043 110 ntBASIC-1.74□□□□□ -2.69
FOXA3P55318 MIR548A3-201ENST00000385297 97 ntBASIC-1.74□□□□□ -2.69
FOXA3P55318 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.74□□□□□ -2.69
FOXA3P55318 AL035461.1-201ENST00000421490 332 ntBASIC-1.74□□□□□ -2.69
FOXA3P55318 MIR4679-2-201ENST00000578358 77 ntBASIC-1.74□□□□□ -2.69
FOXA3P55318 Y_RNA.778-201ENST00000620203 90 ntBASIC-1.74□□□□□ -2.69
FOXA3P55318 Y_RNA.109-201ENST00000363215 102 ntBASIC-1.75□□□□□ -2.69
FOXA3P55318 RNU6-563P-201ENST00000364872 108 ntBASIC-1.75□□□□□ -2.69
FOXA3P55318 Y_RNA.630-201ENST00000411370 108 ntBASIC-1.75□□□□□ -2.69
FOXA3P55318 RNU6-111P-201ENST00000517179 105 ntBASIC-1.75□□□□□ -2.69
FOXA3P55318 MIR4756-201ENST00000577874 78 ntBASIC-1.75□□□□□ -2.69
FOXA3P55318 MIR5009-201ENST00000578736 100 ntBASIC-1.75□□□□□ -2.69
FOXA3P55318 MIR23C-201ENST00000579846 100 ntBASIC-1.75□□□□□ -2.69
FOXA3P55318 Y_RNA.74-201ENST00000362911 99 ntBASIC-1.76□□□□□ -2.69
FOXA3P55318 RNU6-681P-201ENST00000364012 104 ntBASIC-1.76□□□□□ -2.69
FOXA3P55318 RNU6-645P-201ENST00000364649 106 ntBASIC-1.76□□□□□ -2.69
FOXA3P55318 Y_RNA.346-201ENST00000365385 112 ntBASIC-1.76□□□□□ -2.69
FOXA3P55318 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.76□□□□□ -2.69
FOXA3P55318 RNU6-1135P-201ENST00000411083 103 ntBASIC-1.76□□□□□ -2.69
FOXA3P55318 Y_RNA.644-201ENST00000459006 113 ntBASIC-1.76□□□□□ -2.69
FOXA3P55318 SNORA81.3-201ENST00000517283 198 ntBASIC-1.76□□□□□ -2.69
FOXA3P55318 MIR3128-201ENST00000581957 66 ntBASIC-1.76□□□□□ -2.69
FOXA3P55318 MIR3123-201ENST00000583417 75 ntBASIC-1.76□□□□□ -2.69
FOXA3P55318 U7.2-201ENST00000607576 63 ntBASIC-1.76□□□□□ -2.69
FOXA3P55318 Y_RNA.10-201ENST00000362371 110 ntBASIC-1.77□□□□□ -2.69
FOXA3P55318 RNU6-598P-201ENST00000364017 105 ntBASIC-1.77□□□□□ -2.69
FOXA3P55318 Y_RNA.460-201ENST00000384255 102 ntBASIC-1.77□□□□□ -2.69
FOXA3P55318 Y_RNA.509-201ENST00000384506 99 ntBASIC-1.77□□□□□ -2.69
FOXA3P55318 MIR1236-201ENST00000408340 102 ntBASIC-1.77□□□□□ -2.69
FOXA3P55318 Y_RNA.609-201ENST00000410669 89 ntBASIC-1.77□□□□□ -2.69
FOXA3P55318 RNU7-153P-201ENST00000516455 62 ntBASIC-1.77□□□□□ -2.69
FOXA3P55318 AC072026.1-201ENST00000605023 201 ntBASIC-1.77□□□□□ -2.69
FOXA3P55318 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-1.77□□□□□ -2.69
FOXA3P55318 RNU4-40P-201ENST00000364351 143 ntBASIC-1.78□□□□□ -2.69
FOXA3P55318 Y_RNA.282-201ENST00000364793 102 ntBASIC-1.78□□□□□ -2.69
FOXA3P55318 Y_RNA.325-201ENST00000365171 122 ntBASIC-1.78□□□□□ -2.69
FOXA3P55318 RNU6-972P-201ENST00000391208 107 ntBASIC-1.78□□□□□ -2.69
FOXA3P55318 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.78□□□□□ -2.69
FOXA3P55318 Y_RNA.705-201ENST00000516862 110 ntBASIC-1.78□□□□□ -2.69
FOXA3P55318 MIR3144-201ENST00000579460 79 ntBASIC-1.78□□□□□ -2.69
FOXA3P55318 Y_RNA.240-201ENST00000364469 95 ntBASIC-1.79□□□□□ -2.7
FOXA3P55318 RNU6-841P-201ENST00000383872 107 ntBASIC-1.79□□□□□ -2.7
FOXA3P55318 Y_RNA.478-201ENST00000384358 107 ntBASIC-1.79□□□□□ -2.7
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms