Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RNU7-129P-201ENST00000516128 62 ntBASIC0.62□□□□□ -2.31
LIG3P49916 RNU6-1232P-201ENST00000516299 86 ntBASIC0.62□□□□□ -2.31
LIG3P49916 RNU6-687P-201ENST00000516443 89 ntBASIC0.62□□□□□ -2.31
LIG3P49916 RN7SL793P-201ENST00000583259 296 ntBASIC0.62□□□□□ -2.31
LIG3P49916 MIR501-201ENST00000390204 84 ntBASIC0.61□□□□□ -2.31
LIG3P49916 MIRLET7D-201ENST00000362263 87 ntBASIC0.6□□□□□ -2.31
LIG3P49916 MIR516B1-201ENST00000385211 90 ntBASIC0.6□□□□□ -2.31
LIG3P49916 AL157398.1-201ENST00000452981 186 ntBASIC0.6□□□□□ -2.31
LIG3P49916 MIR4677-201ENST00000584153 80 ntBASIC0.6□□□□□ -2.31
LIG3P49916 MIR6779-201ENST00000617283 64 ntBASIC0.6□□□□□ -2.31
LIG3P49916 MIR6513-201ENST00000621188 64 ntBASIC0.6□□□□□ -2.31
LIG3P49916 Y_RNA.250-201ENST00000364542 110 ntBASIC0.58□□□□□ -2.32
LIG3P49916 RNU6-634P-201ENST00000459134 106 ntBASIC0.58□□□□□ -2.32
LIG3P49916 RNA5SP147-201ENST00000516493 109 ntBASIC0.58□□□□□ -2.32
LIG3P49916 SNORA40.17-201ENST00000517256 115 ntBASIC0.58□□□□□ -2.32
LIG3P49916 MIR548AD-201ENST00000584780 82 ntBASIC0.58□□□□□ -2.32
LIG3P49916 MIR103A1-201ENST00000362165 78 ntBASIC0.57□□□□□ -2.32
LIG3P49916 MIR20A-201ENST00000362279 71 ntBASIC0.57□□□□□ -2.32
LIG3P49916 SNORA9.1-201ENST00000362412 131 ntBASIC0.57□□□□□ -2.32
LIG3P49916 SNORD114-29-201ENST00000364819 70 ntBASIC0.57□□□□□ -2.32
LIG3P49916 RNA5SP347-201ENST00000362445 119 ntBASIC0.56□□□□□ -2.32
LIG3P49916 RNA5SP499-201ENST00000363982 119 ntBASIC0.56□□□□□ -2.32
LIG3P49916 SNORD115-22-201ENST00000364456 82 ntBASIC0.56□□□□□ -2.32
LIG3P49916 SNORA63.6-201ENST00000364921 119 ntBASIC0.56□□□□□ -2.32
LIG3P49916 AC244090.1-201ENST00000441884 93 ntBASIC0.56□□□□□ -2.32
LIG3P49916 AC021146.9-201ENST00000512503 156 ntBASIC0.56□□□□□ -2.32
LIG3P49916 AC084368.1-201ENST00000620935 65 ntBASIC0.56□□□□□ -2.32
LIG3P49916 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.56□□□□□ -2.32
LIG3P49916 SNORD115-31-201ENST00000365318 82 ntBASIC0.55□□□□□ -2.32
LIG3P49916 MIR548E-201ENST00000408287 88 ntBASIC0.55□□□□□ -2.32
LIG3P49916 AC073261.1-201ENST00000429409 121 ntBASIC0.55□□□□□ -2.32
LIG3P49916 MIR499B-201ENST00000636498 73 ntBASIC0.55□□□□□ -2.32
LIG3P49916 Y_RNA.205-201ENST00000364128 113 ntBASIC0.54□□□□□ -2.32
LIG3P49916 RNU6-895P-201ENST00000384125 103 ntBASIC0.54□□□□□ -2.32
LIG3P49916 SNORD45A-201ENST00000384512 84 ntBASIC0.54□□□□□ -2.32
LIG3P49916 snoU13.13-201ENST00000458842 104 ntBASIC0.54□□□□□ -2.32
LIG3P49916 RNU6-881P-201ENST00000516813 102 ntBASIC0.54□□□□□ -2.32
LIG3P49916 RNU7-188P-201ENST00000517063 64 ntBASIC0.54□□□□□ -2.32
LIG3P49916 SNORD114-23-201ENST00000363536 72 ntBASIC0.53□□□□□ -2.32
LIG3P49916 MIR582-201ENST00000365731 98 ntBASIC0.53□□□□□ -2.32
LIG3P49916 MIR936-201ENST00000401264 98 ntBASIC0.53□□□□□ -2.32
LIG3P49916 RNA5SP62-201ENST00000363457 110 ntBASIC0.52□□□□□ -2.33
LIG3P49916 MIR193B-201ENST00000384907 83 ntBASIC0.52□□□□□ -2.33
LIG3P49916 RNU6-982P-201ENST00000516216 102 ntBASIC0.52□□□□□ -2.33
LIG3P49916 AC090625.1-201ENST00000357130 210 ntBASIC0.51□□□□□ -2.33
LIG3P49916 SNORD113.1-201ENST00000363280 73 ntBASIC0.51□□□□□ -2.33
LIG3P49916 SNORD2-201ENST00000459163 69 ntBASIC0.51□□□□□ -2.33
LIG3P49916 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.51□□□□□ -2.33
LIG3P49916 MIR5087-201ENST00000635826 76 ntBASIC0.51□□□□□ -2.33
LIG3P49916 RNU6-1162P-201ENST00000384443 104 ntBASIC0.5□□□□□ -2.33
LIG3P49916 MIR6739-201ENST00000622461 75 ntBASIC0.5□□□□□ -2.33
LIG3P49916 SNORA15B-2-201ENST00000384058 135 ntBASIC0.49□□□□□ -2.33
LIG3P49916 RNU6-815P-201ENST00000384080 113 ntBASIC0.49□□□□□ -2.33
LIG3P49916 SNORA15B-1-201ENST00000384334 135 ntBASIC0.49□□□□□ -2.33
LIG3P49916 SNORA75.1-201ENST00000391130 148 ntBASIC0.49□□□□□ -2.33
LIG3P49916 MIR4711-201ENST00000578274 70 ntBASIC0.49□□□□□ -2.33
LIG3P49916 AC243829.3-201ENST00000622177 108 ntBASIC0.49□□□□□ -2.33
LIG3P49916 AC010487.4-201ENST00000637027 61 ntBASIC0.49□□□□□ -2.33
LIG3P49916 RNU6-1327P-201ENST00000365302 105 ntBASIC0.48□□□□□ -2.33
LIG3P49916 RNU6-540P-201ENST00000384622 101 ntBASIC0.48□□□□□ -2.33
LIG3P49916 RNA5SP193-201ENST00000410353 107 ntBASIC0.48□□□□□ -2.33
LIG3P49916 MTND4LP1-201ENST00000446263 157 ntBASIC0.48□□□□□ -2.33
LIG3P49916 MIR1273G-201ENST00000577677 100 ntBASIC0.48□□□□□ -2.33
LIG3P49916 AL109933.3-201ENST00000619095 188 ntBASIC0.48□□□□□ -2.33
LIG3P49916 RNA5SP325-201ENST00000363756 130 ntBASIC0.47□□□□□ -2.33
LIG3P49916 RNU6-645P-201ENST00000364649 106 ntBASIC0.47□□□□□ -2.33
LIG3P49916 RNU6-127P-201ENST00000390897 107 ntBASIC0.47□□□□□ -2.33
LIG3P49916 MIR876-201ENST00000401147 81 ntBASIC0.47□□□□□ -2.33
LIG3P49916 AC114737.2-201ENST00000421583 173 ntBASIC0.47□□□□□ -2.33
LIG3P49916 AC069113.3-201ENST00000521019 150 ntBASIC0.47□□□□□ -2.33
LIG3P49916 MIR3925-201ENST00000584674 77 ntBASIC0.47□□□□□ -2.33
LIG3P49916 RNU6-1216P-201ENST00000362590 107 ntBASIC0.46□□□□□ -2.34
LIG3P49916 MIR521-2-201ENST00000384818 87 ntBASIC0.46□□□□□ -2.34
LIG3P49916 Y_RNA.633-201ENST00000459107 95 ntBASIC0.46□□□□□ -2.34
LIG3P49916 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.46□□□□□ -2.34
LIG3P49916 SNORD30.1-201ENST00000391309 70 ntBASIC0.45□□□□□ -2.34
LIG3P49916 SCARNA11.2-201ENST00000517183 154 ntBASIC0.45□□□□□ -2.34
LIG3P49916 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.44□□□□□ -2.34
LIG3P49916 SNORA50A-201ENST00000384225 134 ntBASIC0.44□□□□□ -2.34
LIG3P49916 RNU6-649P-201ENST00000384463 107 ntBASIC0.44□□□□□ -2.34
LIG3P49916 RNU6-663P-201ENST00000391105 106 ntBASIC0.44□□□□□ -2.34
LIG3P49916 AC114801.3-201ENST00000510231 177 ntBASIC0.44□□□□□ -2.34
LIG3P49916 RNU6-782P-201ENST00000516852 104 ntBASIC0.44□□□□□ -2.34
LIG3P49916 SNORD116-24-201ENST00000384549 92 ntBASIC0.43□□□□□ -2.34
LIG3P49916 RNU6-175P-201ENST00000516896 107 ntBASIC0.43□□□□□ -2.34
LIG3P49916 MIR924-201ENST00000638017 53 ntBASIC0.43□□□□□ -2.34
LIG3P49916 RNU6-668P-201ENST00000364180 107 ntBASIC0.42□□□□□ -2.34
LIG3P49916 RNU6-656P-201ENST00000516785 107 ntBASIC0.42□□□□□ -2.34
LIG3P49916 AC139453.2-201ENST00000487255 133 ntBASIC0.41□□□□□ -2.34
LIG3P49916 RNU6-539P-201ENST00000516665 103 ntBASIC0.41□□□□□ -2.34
LIG3P49916 AC243829.6-201ENST00000612652 106 ntBASIC0.41□□□□□ -2.34
LIG3P49916 AC090617.8-201ENST00000623339 167 ntBASIC0.41□□□□□ -2.34
LIG3P49916 SNORA33.1-201ENST00000364957 130 ntBASIC0.4□□□□□ -2.35
LIG3P49916 MIR643-201ENST00000385267 97 ntBASIC0.4□□□□□ -2.35
LIG3P49916 RN7SL660P-201ENST00000614852 299 ntBASIC0.4□□□□□ -2.35
LIG3P49916 U6.96-201ENST00000636425 70 ntBASIC0.4□□□□□ -2.35
LIG3P49916 RNU6-1036P-201ENST00000383959 104 ntBASIC0.39□□□□□ -2.35
LIG3P49916 SNORA49-201ENST00000386157 136 ntBASIC0.39□□□□□ -2.35
LIG3P49916 AC108740.1-201ENST00000498629 225 ntBASIC0.39□□□□□ -2.35
LIG3P49916 MIR4315-1-201ENST00000636800 73 ntBASIC0.39□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 228.9 ms