Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 SNORD115-31-201ENST00000365318 82 ntBASIC0.74□□□□□ -2.29
COL6A1P12109 RNU6-881P-201ENST00000516813 102 ntBASIC0.74□□□□□ -2.29
COL6A1P12109 AC018659.1-201ENST00000551083 169 ntBASIC0.74□□□□□ -2.29
COL6A1P12109 MIR5706-201ENST00000579841 80 ntBASIC0.74□□□□□ -2.29
COL6A1P12109 MIR3657-201ENST00000584818 117 ntBASIC0.74□□□□□ -2.29
COL6A1P12109 SNORA25.18-201ENST00000607153 114 ntBASIC0.74□□□□□ -2.29
COL6A1P12109 MIR2909-201ENST00000617113 69 ntBASIC0.74□□□□□ -2.29
COL6A1P12109 AC243829.3-201ENST00000622177 108 ntBASIC0.74□□□□□ -2.29
COL6A1P12109 SNORA2.1-201ENST00000363089 137 ntBASIC0.73□□□□□ -2.29
COL6A1P12109 SNORD118-201ENST00000363593 134 ntBASIC0.73□□□□□ -2.29
COL6A1P12109 SNORD115-22-201ENST00000364456 82 ntBASIC0.73□□□□□ -2.29
COL6A1P12109 SNORD45A-201ENST00000384512 84 ntBASIC0.73□□□□□ -2.29
COL6A1P12109 RNU6-663P-201ENST00000391105 106 ntBASIC0.73□□□□□ -2.29
COL6A1P12109 AC098934.3-201ENST00000430450 190 ntBASIC0.73□□□□□ -2.29
COL6A1P12109 HAR1A.1-201ENST00000459583 118 ntBASIC0.73□□□□□ -2.29
COL6A1P12109 RNU4-54P-201ENST00000516428 129 ntBASIC0.73□□□□□ -2.29
COL6A1P12109 MIR4473-201ENST00000583731 91 ntBASIC0.73□□□□□ -2.29
COL6A1P12109 RNU6-540P-201ENST00000384622 101 ntBASIC0.72□□□□□ -2.29
COL6A1P12109 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.72□□□□□ -2.29
COL6A1P12109 MIR4752-201ENST00000579672 72 ntBASIC0.72□□□□□ -2.29
COL6A1P12109 U7.6-201ENST00000610841 64 ntBASIC0.72□□□□□ -2.29
COL6A1P12109 SNORA70.25-201ENST00000612741 95 ntBASIC0.72□□□□□ -2.29
COL6A1P12109 SNORD113.1-201ENST00000363280 73 ntBASIC0.71□□□□□ -2.3
COL6A1P12109 RNU6-590P-201ENST00000365039 107 ntBASIC0.71□□□□□ -2.3
COL6A1P12109 AC069271.1-201ENST00000445577 156 ntBASIC0.71□□□□□ -2.3
COL6A1P12109 RNU6-1216P-201ENST00000362590 107 ntBASIC0.7□□□□□ -2.3
COL6A1P12109 MIR518A1-201ENST00000385068 85 ntBASIC0.7□□□□□ -2.3
COL6A1P12109 uc_338.10-201ENST00000621872 182 ntBASIC0.7□□□□□ -2.3
COL6A1P12109 RNU6-990P-201ENST00000364385 104 ntBASIC0.69□□□□□ -2.3
COL6A1P12109 Y_RNA.250-201ENST00000364542 110 ntBASIC0.69□□□□□ -2.3
COL6A1P12109 SNORA2A-201ENST00000383885 135 ntBASIC0.69□□□□□ -2.3
COL6A1P12109 MTND4LP1-201ENST00000446263 157 ntBASIC0.69□□□□□ -2.3
COL6A1P12109 SCARNA17.3-201ENST00000516381 125 ntBASIC0.69□□□□□ -2.3
COL6A1P12109 RNU6-788P-201ENST00000390967 104 ntBASIC0.68□□□□□ -2.3
COL6A1P12109 RNU6-229P-201ENST00000516614 102 ntBASIC0.68□□□□□ -2.3
COL6A1P12109 RNU6-945P-201ENST00000383947 107 ntBASIC0.67□□□□□ -2.3
COL6A1P12109 MIR652-201ENST00000385278 98 ntBASIC0.67□□□□□ -2.3
COL6A1P12109 RNU6-848P-201ENST00000515948 107 ntBASIC0.67□□□□□ -2.3
COL6A1P12109 RNU6-617P-201ENST00000516147 107 ntBASIC0.67□□□□□ -2.3
COL6A1P12109 RNU6-473P-201ENST00000516164 107 ntBASIC0.67□□□□□ -2.3
COL6A1P12109 RNU6-1049P-201ENST00000516414 107 ntBASIC0.67□□□□□ -2.3
COL6A1P12109 RNA5SP147-201ENST00000516493 109 ntBASIC0.67□□□□□ -2.3
COL6A1P12109 U6.111-201ENST00000636093 83 ntBASIC0.67□□□□□ -2.3
COL6A1P12109 RNU6-35P-201ENST00000384530 107 ntBASIC0.66□□□□□ -2.3
COL6A1P12109 MIR548AE1-201ENST00000583292 70 ntBASIC0.66□□□□□ -2.3
COL6A1P12109 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.65□□□□□ -2.3
COL6A1P12109 Y_RNA.423-201ENST00000384057 113 ntBASIC0.65□□□□□ -2.31
COL6A1P12109 HMGN2P22-201ENST00000427588 175 ntBASIC0.65□□□□□ -2.31
COL6A1P12109 RNU1-29P-201ENST00000606574 126 ntBASIC0.65□□□□□ -2.31
COL6A1P12109 Y_RNA.125-201ENST00000363371 111 ntBASIC0.64□□□□□ -2.31
COL6A1P12109 RNU6-1162P-201ENST00000384443 104 ntBASIC0.64□□□□□ -2.31
COL6A1P12109 AC021146.9-201ENST00000512503 156 ntBASIC0.64□□□□□ -2.31
COL6A1P12109 RNU6-863P-201ENST00000515989 104 ntBASIC0.64□□□□□ -2.31
COL6A1P12109 RNU6-668P-201ENST00000364180 107 ntBASIC0.63□□□□□ -2.31
COL6A1P12109 RNU6-645P-201ENST00000364649 106 ntBASIC0.63□□□□□ -2.31
COL6A1P12109 SNORA63.6-201ENST00000364921 119 ntBASIC0.63□□□□□ -2.31
COL6A1P12109 RNU6-800P-201ENST00000384473 103 ntBASIC0.63□□□□□ -2.31
COL6A1P12109 RNU6-982P-201ENST00000516216 102 ntBASIC0.63□□□□□ -2.31
COL6A1P12109 MIR6739-201ENST00000622461 75 ntBASIC0.63□□□□□ -2.31
COL6A1P12109 SNORA25.4-201ENST00000363666 124 ntBASIC0.62□□□□□ -2.31
COL6A1P12109 Y_RNA.443-201ENST00000384135 111 ntBASIC0.62□□□□□ -2.31
COL6A1P12109 RNU6-630P-201ENST00000391258 106 ntBASIC0.62□□□□□ -2.31
COL6A1P12109 MIR20A-201ENST00000362279 71 ntBASIC0.61□□□□□ -2.31
COL6A1P12109 SNORA15B-2-201ENST00000384058 135 ntBASIC0.61□□□□□ -2.31
COL6A1P12109 SNORA15B-1-201ENST00000384334 135 ntBASIC0.61□□□□□ -2.31
COL6A1P12109 SNORA40.17-201ENST00000517256 115 ntBASIC0.61□□□□□ -2.31
COL6A1P12109 SNORD114-29-201ENST00000364819 70 ntBASIC0.6□□□□□ -2.31
COL6A1P12109 SNORD116-24-201ENST00000384549 92 ntBASIC0.6□□□□□ -2.31
COL6A1P12109 MIR760-201ENST00000390220 80 ntBASIC0.6□□□□□ -2.31
COL6A1P12109 AC244090.1-201ENST00000441884 93 ntBASIC0.6□□□□□ -2.31
COL6A1P12109 AC125388.1-201ENST00000459631 156 ntBASIC0.6□□□□□ -2.31
COL6A1P12109 AC243829.6-201ENST00000612652 106 ntBASIC0.6□□□□□ -2.31
COL6A1P12109 MIR5087-201ENST00000635826 76 ntBASIC0.6□□□□□ -2.31
COL6A1P12109 VTRNA1-3-201ENST00000365645 89 ntBASIC0.59□□□□□ -2.31
COL6A1P12109 MIR521-2-201ENST00000384818 87 ntBASIC0.59□□□□□ -2.31
COL6A1P12109 MIR548E-201ENST00000408287 88 ntBASIC0.59□□□□□ -2.31
COL6A1P12109 snoU13.13-201ENST00000458842 104 ntBASIC0.59□□□□□ -2.31
COL6A1P12109 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.59□□□□□ -2.31
COL6A1P12109 MIR516B1-201ENST00000385211 90 ntBASIC0.58□□□□□ -2.32
COL6A1P12109 SNORD2-201ENST00000459163 69 ntBASIC0.58□□□□□ -2.32
COL6A1P12109 AC005520.4-201ENST00000604337 90 ntBASIC0.58□□□□□ -2.32
COL6A1P12109 MIR6755-201ENST00000619993 66 ntBASIC0.58□□□□□ -2.32
COL6A1P12109 MIR6086-201ENST00000638065 55 ntBASIC0.58□□□□□ -2.32
COL6A1P12109 RNA5SP128-201ENST00000365305 116 ntBASIC0.57□□□□□ -2.32
COL6A1P12109 RNU6-656P-201ENST00000516785 107 ntBASIC0.57□□□□□ -2.32
COL6A1P12109 uc_338.17-201ENST00000619633 179 ntBASIC0.57□□□□□ -2.32
COL6A1P12109 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
COL6A1P12109 Y_RNA.340-201ENST00000365330 92 ntBASIC0.56□□□□□ -2.32
COL6A1P12109 MIR582-201ENST00000365731 98 ntBASIC0.56□□□□□ -2.32
COL6A1P12109 MIR92A1-201ENST00000385233 78 ntBASIC0.56□□□□□ -2.32
COL6A1P12109 MIR4677-201ENST00000584153 80 ntBASIC0.56□□□□□ -2.32
COL6A1P12109 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.55□□□□□ -2.32
COL6A1P12109 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.55□□□□□ -2.32
COL6A1P12109 Y_RNA.386-201ENST00000383913 105 ntBASIC0.55□□□□□ -2.32
COL6A1P12109 MIR501-201ENST00000390204 84 ntBASIC0.55□□□□□ -2.32
COL6A1P12109 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC0.55□□□□□ -2.32
COL6A1P12109 Y_RNA.633-201ENST00000459107 95 ntBASIC0.55□□□□□ -2.32
COL6A1P12109 RNU7-129P-201ENST00000516128 62 ntBASIC0.55□□□□□ -2.32
COL6A1P12109 RNU6-1232P-201ENST00000516299 86 ntBASIC0.55□□□□□ -2.32
COL6A1P12109 MIR548AD-201ENST00000584780 82 ntBASIC0.55□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 176.9 ms