Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 Y_RNA.163-201ENST00000363702 113 ntBASIC-1.18□□□□□ -2.6
USH1CQ9Y6N9 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.18□□□□□ -2.6
USH1CQ9Y6N9 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.18□□□□□ -2.6
USH1CQ9Y6N9 AL158147.1-201ENST00000443970 75 ntBASIC-1.18□□□□□ -2.6
USH1CQ9Y6N9 AC021146.9-201ENST00000512503 156 ntBASIC-1.18□□□□□ -2.6
USH1CQ9Y6N9 RNU6-412P-201ENST00000516434 106 ntBASIC-1.18□□□□□ -2.6
USH1CQ9Y6N9 MIR4694-201ENST00000578534 80 ntBASIC-1.18□□□□□ -2.6
USH1CQ9Y6N9 MIR3064-201ENST00000581130 66 ntBASIC-1.18□□□□□ -2.6
USH1CQ9Y6N9 MIR4320-201ENST00000636981 65 ntBASIC-1.18□□□□□ -2.6
USH1CQ9Y6N9 SNORA2.1-201ENST00000363089 137 ntBASIC-1.19□□□□□ -2.6
USH1CQ9Y6N9 Y_RNA.145-201ENST00000363527 102 ntBASIC-1.19□□□□□ -2.6
USH1CQ9Y6N9 Y_RNA.162-201ENST00000363683 102 ntBASIC-1.19□□□□□ -2.6
USH1CQ9Y6N9 Y_RNA.272-201ENST00000364696 102 ntBASIC-1.19□□□□□ -2.6
USH1CQ9Y6N9 RNU6-1177P-201ENST00000391058 104 ntBASIC-1.19□□□□□ -2.6
USH1CQ9Y6N9 U6.96-201ENST00000636425 70 ntBASIC-1.19□□□□□ -2.6
USH1CQ9Y6N9 SNORD115-33-201ENST00000363723 82 ntBASIC-1.2□□□□□ -2.6
USH1CQ9Y6N9 MIR568-201ENST00000385036 95 ntBASIC-1.2□□□□□ -2.6
USH1CQ9Y6N9 MIR548A1-201ENST00000385041 97 ntBASIC-1.2□□□□□ -2.6
USH1CQ9Y6N9 RNU6-1153P-201ENST00000516760 105 ntBASIC-1.2□□□□□ -2.6
USH1CQ9Y6N9 AC062037.2-201ENST00000610137 73 ntBASIC-1.2□□□□□ -2.6
USH1CQ9Y6N9 Y_RNA.452-201ENST00000384202 108 ntBASIC-1.21□□□□□ -2.6
USH1CQ9Y6N9 MIR548U-201ENST00000390728 81 ntBASIC-1.21□□□□□ -2.6
USH1CQ9Y6N9 RNU6-576P-201ENST00000390854 102 ntBASIC-1.21□□□□□ -2.6
USH1CQ9Y6N9 MTCYBP9-201ENST00000431021 303 ntBASIC-1.21□□□□□ -2.6
USH1CQ9Y6N9 AC104996.3-201ENST00000590718 94 ntBASIC-1.21□□□□□ -2.6
USH1CQ9Y6N9 AC008737.2-201ENST00000599446 118 ntBASIC-1.21□□□□□ -2.6
USH1CQ9Y6N9 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.21□□□□□ -2.6
USH1CQ9Y6N9 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.21□□□□□ -2.6
USH1CQ9Y6N9 RNU6-774P-201ENST00000363238 107 ntBASIC-1.22□□□□□ -2.6
USH1CQ9Y6N9 RNU6-832P-201ENST00000363319 107 ntBASIC-1.22□□□□□ -2.6
USH1CQ9Y6N9 SNORA20.1-201ENST00000364790 130 ntBASIC-1.22□□□□□ -2.6
USH1CQ9Y6N9 Y_RNA.326-201ENST00000365176 113 ntBASIC-1.22□□□□□ -2.6
USH1CQ9Y6N9 RNU6-1051P-201ENST00000365471 102 ntBASIC-1.22□□□□□ -2.6
USH1CQ9Y6N9 MIR606-201ENST00000384851 96 ntBASIC-1.22□□□□□ -2.6
USH1CQ9Y6N9 RNA5SP86-201ENST00000390869 98 ntBASIC-1.22□□□□□ -2.6
USH1CQ9Y6N9 MIR1468-201ENST00000410600 86 ntBASIC-1.22□□□□□ -2.6
USH1CQ9Y6N9 Y_RNA.644-201ENST00000459006 113 ntBASIC-1.22□□□□□ -2.6
USH1CQ9Y6N9 SNORD4B-201ENST00000459083 72 ntBASIC-1.22□□□□□ -2.6
USH1CQ9Y6N9 Y_RNA.674-201ENST00000516362 113 ntBASIC-1.22□□□□□ -2.6
USH1CQ9Y6N9 MIR4770-201ENST00000579149 58 ntBASIC-1.22□□□□□ -2.6
USH1CQ9Y6N9 MIR3613-201ENST00000579844 87 ntBASIC-1.22□□□□□ -2.6
USH1CQ9Y6N9 MIR548AG1-201ENST00000579932 66 ntBASIC-1.22□□□□□ -2.6
USH1CQ9Y6N9 Y_RNA.778-201ENST00000620203 90 ntBASIC-1.22□□□□□ -2.6
USH1CQ9Y6N9 RNU6-151P-201ENST00000364158 107 ntBASIC-1.23□□□□□ -2.61
USH1CQ9Y6N9 SNORA33.1-201ENST00000364957 130 ntBASIC-1.23□□□□□ -2.61
USH1CQ9Y6N9 RNU4-61P-201ENST00000411243 107 ntBASIC-1.23□□□□□ -2.61
USH1CQ9Y6N9 RNU6-62P-201ENST00000516526 102 ntBASIC-1.23□□□□□ -2.61
USH1CQ9Y6N9 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-1.23□□□□□ -2.61
USH1CQ9Y6N9 MIR4439-201ENST00000583746 80 ntBASIC-1.23□□□□□ -2.61
USH1CQ9Y6N9 Y_RNA.11-201ENST00000362375 109 ntBASIC-1.24□□□□□ -2.61
USH1CQ9Y6N9 RNY3P2-201ENST00000362918 102 ntBASIC-1.24□□□□□ -2.61
USH1CQ9Y6N9 RNU6-164P-201ENST00000364604 103 ntBASIC-1.24□□□□□ -2.61
USH1CQ9Y6N9 Y_RNA.491-201ENST00000384417 107 ntBASIC-1.24□□□□□ -2.61
USH1CQ9Y6N9 RNU6-738P-201ENST00000384531 106 ntBASIC-1.24□□□□□ -2.61
USH1CQ9Y6N9 SNORD90-201ENST00000391145 111 ntBASIC-1.24□□□□□ -2.61
USH1CQ9Y6N9 RNU6-644P-201ENST00000391155 98 ntBASIC-1.24□□□□□ -2.61
USH1CQ9Y6N9 SNORD19-201ENST00000391191 68 ntBASIC-1.24□□□□□ -2.61
USH1CQ9Y6N9 MIR1255B2-201ENST00000408618 67 ntBASIC-1.24□□□□□ -2.61
USH1CQ9Y6N9 snoU13.17-201ENST00000458802 104 ntBASIC-1.24□□□□□ -2.61
USH1CQ9Y6N9 AC025166.1-201ENST00000612411 163 ntBASIC-1.24□□□□□ -2.61
USH1CQ9Y6N9 RNU6-682P-201ENST00000363843 106 ntBASIC-1.25□□□□□ -2.61
USH1CQ9Y6N9 RNU6-867P-201ENST00000364956 107 ntBASIC-1.25□□□□□ -2.61
USH1CQ9Y6N9 RNU6-382P-201ENST00000365181 106 ntBASIC-1.25□□□□□ -2.61
USH1CQ9Y6N9 SNORD58C-201ENST00000365223 64 ntBASIC-1.25□□□□□ -2.61
USH1CQ9Y6N9 RNU6-1014P-201ENST00000383940 103 ntBASIC-1.25□□□□□ -2.61
USH1CQ9Y6N9 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.25□□□□□ -2.61
USH1CQ9Y6N9 Y_RNA.580-201ENST00000391004 95 ntBASIC-1.25□□□□□ -2.61
USH1CQ9Y6N9 U7.2-201ENST00000607576 63 ntBASIC-1.25□□□□□ -2.61
USH1CQ9Y6N9 Y_RNA.420-201ENST00000384043 110 ntBASIC-1.26□□□□□ -2.61
USH1CQ9Y6N9 SNORA15B-2-201ENST00000384058 135 ntBASIC-1.26□□□□□ -2.61
USH1CQ9Y6N9 RNU6-260P-201ENST00000384092 107 ntBASIC-1.26□□□□□ -2.61
USH1CQ9Y6N9 SNORA15B-1-201ENST00000384334 135 ntBASIC-1.26□□□□□ -2.61
USH1CQ9Y6N9 RNU6-540P-201ENST00000384622 101 ntBASIC-1.26□□□□□ -2.61
USH1CQ9Y6N9 RNA5SP292-201ENST00000390974 118 ntBASIC-1.26□□□□□ -2.61
USH1CQ9Y6N9 RNU7-120P-201ENST00000459334 63 ntBASIC-1.26□□□□□ -2.61
USH1CQ9Y6N9 RNU6-861P-201ENST00000516745 106 ntBASIC-1.26□□□□□ -2.61
USH1CQ9Y6N9 MIR4679-2-201ENST00000578358 77 ntBASIC-1.26□□□□□ -2.61
USH1CQ9Y6N9 MIR198-201ENST00000637333 62 ntBASIC-1.26□□□□□ -2.61
USH1CQ9Y6N9 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.27□□□□□ -2.61
USH1CQ9Y6N9 RNU6-924P-201ENST00000362926 108 ntBASIC-1.27□□□□□ -2.61
USH1CQ9Y6N9 RNU6-797P-201ENST00000363101 109 ntBASIC-1.27□□□□□ -2.61
USH1CQ9Y6N9 RNU6-704P-201ENST00000364162 103 ntBASIC-1.27□□□□□ -2.61
USH1CQ9Y6N9 Y_RNA.309-201ENST00000365046 111 ntBASIC-1.27□□□□□ -2.61
USH1CQ9Y6N9 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.27□□□□□ -2.61
USH1CQ9Y6N9 RNU6-80P-201ENST00000384195 107 ntBASIC-1.27□□□□□ -2.61
USH1CQ9Y6N9 MIR513C-201ENST00000401352 84 ntBASIC-1.27□□□□□ -2.61
USH1CQ9Y6N9 AL035470.1-201ENST00000622571 220 ntBASIC-1.27□□□□□ -2.61
USH1CQ9Y6N9 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.28□□□□□ -2.61
USH1CQ9Y6N9 Y_RNA.250-201ENST00000364542 110 ntBASIC-1.28□□□□□ -2.61
USH1CQ9Y6N9 MIR487B-201ENST00000385021 84 ntBASIC-1.28□□□□□ -2.61
USH1CQ9Y6N9 MIR507-201ENST00000385234 94 ntBASIC-1.28□□□□□ -2.61
USH1CQ9Y6N9 MIR601-201ENST00000385256 79 ntBASIC-1.28□□□□□ -2.61
USH1CQ9Y6N9 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-1.28□□□□□ -2.61
USH1CQ9Y6N9 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.28□□□□□ -2.61
USH1CQ9Y6N9 AC090616.4-201ENST00000448026 115 ntBASIC-1.28□□□□□ -2.61
USH1CQ9Y6N9 CYP3A54P-201ENST00000566950 75 ntBASIC-1.28□□□□□ -2.61
USH1CQ9Y6N9 AC006254.2-201ENST00000603259 279 ntBASIC-1.28□□□□□ -2.61
USH1CQ9Y6N9 Y_RNA.188-201ENST00000363952 111 ntBASIC-1.29□□□□□ -2.62
USH1CQ9Y6N9 Y_RNA.297-201ENST00000364950 91 ntBASIC-1.29□□□□□ -2.62
USH1CQ9Y6N9 Y_RNA.307-201ENST00000365022 117 ntBASIC-1.29□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 218.6 ms