Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 SNORA40.17-201ENST00000517256 115 ntBASIC1.28□□□□□ -2.2
CHMP3Q9Y3E7 MIR3657-201ENST00000584818 117 ntBASIC1.28□□□□□ -2.2
CHMP3Q9Y3E7 RNU1-93P-201ENST00000364704 169 ntBASIC1.27□□□□□ -2.21
CHMP3Q9Y3E7 MIR520E-201ENST00000384867 87 ntBASIC1.27□□□□□ -2.21
CHMP3Q9Y3E7 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.27□□□□□ -2.21
CHMP3Q9Y3E7 AC005520.4-201ENST00000604337 90 ntBASIC1.27□□□□□ -2.21
CHMP3Q9Y3E7 MIR7107-201ENST00000611489 80 ntBASIC1.27□□□□□ -2.21
CHMP3Q9Y3E7 RNU6-630P-201ENST00000391258 106 ntBASIC1.26□□□□□ -2.21
CHMP3Q9Y3E7 RNA5SP147-201ENST00000516493 109 ntBASIC1.26□□□□□ -2.21
CHMP3Q9Y3E7 AL353765.1-201ENST00000605514 183 ntBASIC1.26□□□□□ -2.21
CHMP3Q9Y3E7 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.25□□□□□ -2.21
CHMP3Q9Y3E7 RNU6-1216P-201ENST00000362590 107 ntBASIC1.25□□□□□ -2.21
CHMP3Q9Y3E7 RNU4-38P-201ENST00000364472 129 ntBASIC1.25□□□□□ -2.21
CHMP3Q9Y3E7 AC125388.1-201ENST00000459631 156 ntBASIC1.25□□□□□ -2.21
CHMP3Q9Y3E7 RPS29P1-201ENST00000465274 159 ntBASIC1.25□□□□□ -2.21
CHMP3Q9Y3E7 AL109933.3-201ENST00000619095 188 ntBASIC1.25□□□□□ -2.21
CHMP3Q9Y3E7 RNU6-260P-201ENST00000384092 107 ntBASIC1.24□□□□□ -2.21
CHMP3Q9Y3E7 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.24□□□□□ -2.21
CHMP3Q9Y3E7 Y_RNA.443-201ENST00000384135 111 ntBASIC1.23□□□□□ -2.21
CHMP3Q9Y3E7 MIR4752-201ENST00000579672 72 ntBASIC1.23□□□□□ -2.21
CHMP3Q9Y3E7 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.22□□□□□ -2.21
CHMP3Q9Y3E7 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.22□□□□□ -2.21
CHMP3Q9Y3E7 AC069503.3-201ENST00000618674 145 ntBASIC1.22□□□□□ -2.21
CHMP3Q9Y3E7 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC1.21□□□□□ -2.22
CHMP3Q9Y3E7 Y_RNA.118-201ENST00000363300 101 ntBASIC1.2□□□□□ -2.22
CHMP3Q9Y3E7 Y_RNA.355-201ENST00000365462 98 ntBASIC1.2□□□□□ -2.22
CHMP3Q9Y3E7 RNU4-45P-201ENST00000365469 141 ntBASIC1.2□□□□□ -2.22
CHMP3Q9Y3E7 SNORA36.2-201ENST00000384004 127 ntBASIC1.2□□□□□ -2.22
CHMP3Q9Y3E7 MIR4473-201ENST00000583731 91 ntBASIC1.2□□□□□ -2.22
CHMP3Q9Y3E7 SNORA70.25-201ENST00000612741 95 ntBASIC1.2□□□□□ -2.22
CHMP3Q9Y3E7 MIR6734-201ENST00000621166 68 ntBASIC1.2□□□□□ -2.22
CHMP3Q9Y3E7 AC073869.9-201ENST00000641610 120 ntBASIC1.2□□□□□ -2.22
CHMP3Q9Y3E7 MIR548AE1-201ENST00000583292 70 ntBASIC1.19□□□□□ -2.22
CHMP3Q9Y3E7 Y_RNA.205-201ENST00000364128 113 ntBASIC1.18□□□□□ -2.22
CHMP3Q9Y3E7 AC006210.1-201ENST00000424882 111 ntBASIC1.18□□□□□ -2.22
CHMP3Q9Y3E7 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.18□□□□□ -2.22
CHMP3Q9Y3E7 snoU13.13-201ENST00000458842 104 ntBASIC1.18□□□□□ -2.22
CHMP3Q9Y3E7 MIR4698-201ENST00000577795 80 ntBASIC1.18□□□□□ -2.22
CHMP3Q9Y3E7 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
CHMP3Q9Y3E7 SNORA2.1-201ENST00000363089 137 ntBASIC1.17□□□□□ -2.22
CHMP3Q9Y3E7 SNORA25.4-201ENST00000363666 124 ntBASIC1.17□□□□□ -2.22
CHMP3Q9Y3E7 RNA5SP517-201ENST00000364724 117 ntBASIC1.17□□□□□ -2.22
CHMP3Q9Y3E7 MIR3973-201ENST00000579824 107 ntBASIC1.17□□□□□ -2.22
CHMP3Q9Y3E7 RNU6-645P-201ENST00000364649 106 ntBASIC1.16□□□□□ -2.22
CHMP3Q9Y3E7 SNORD110-201ENST00000408189 75 ntBASIC1.16□□□□□ -2.22
CHMP3Q9Y3E7 SNORA25.18-201ENST00000607153 114 ntBASIC1.16□□□□□ -2.22
CHMP3Q9Y3E7 RNU6-471P-201ENST00000383944 106 ntBASIC1.15□□□□□ -2.23
CHMP3Q9Y3E7 MIR7-2-201ENST00000384970 110 ntBASIC1.15□□□□□ -2.23
CHMP3Q9Y3E7 ACA64.5-201ENST00000516207 127 ntBASIC1.15□□□□□ -2.23
CHMP3Q9Y3E7 RNA5SP220-201ENST00000516298 104 ntBASIC1.15□□□□□ -2.23
CHMP3Q9Y3E7 MIR4661-201ENST00000582720 75 ntBASIC1.15□□□□□ -2.23
CHMP3Q9Y3E7 MIR373-201ENST00000362273 69 ntBASIC1.14□□□□□ -2.23
CHMP3Q9Y3E7 MIR532-201ENST00000385025 91 ntBASIC1.14□□□□□ -2.23
CHMP3Q9Y3E7 MIR652-201ENST00000385278 98 ntBASIC1.14□□□□□ -2.23
CHMP3Q9Y3E7 AC211469.2-201ENST00000605461 205 ntBASIC1.14□□□□□ -2.23
CHMP3Q9Y3E7 RNU1-29P-201ENST00000606574 126 ntBASIC1.14□□□□□ -2.23
CHMP3Q9Y3E7 RNU6-1187P-201ENST00000364771 110 ntBASIC1.13□□□□□ -2.23
CHMP3Q9Y3E7 MIR140-201ENST00000385282 100 ntBASIC1.13□□□□□ -2.23
CHMP3Q9Y3E7 MIR548J-201ENST00000408833 112 ntBASIC1.13□□□□□ -2.23
CHMP3Q9Y3E7 AC069271.1-201ENST00000445577 156 ntBASIC1.13□□□□□ -2.23
CHMP3Q9Y3E7 RNU6-668P-201ENST00000364180 107 ntBASIC1.12□□□□□ -2.23
CHMP3Q9Y3E7 Y_RNA.407-201ENST00000383986 113 ntBASIC1.12□□□□□ -2.23
CHMP3Q9Y3E7 RNU6-42P-201ENST00000384165 107 ntBASIC1.12□□□□□ -2.23
CHMP3Q9Y3E7 MIR9-2-201ENST00000384838 87 ntBASIC1.12□□□□□ -2.23
CHMP3Q9Y3E7 MTND4LP1-201ENST00000446263 157 ntBASIC1.12□□□□□ -2.23
CHMP3Q9Y3E7 RNU6-656P-201ENST00000516785 107 ntBASIC1.12□□□□□ -2.23
CHMP3Q9Y3E7 MIR6788-201ENST00000618842 66 ntBASIC1.12□□□□□ -2.23
CHMP3Q9Y3E7 MIR608-201ENST00000384820 100 ntBASIC1.11□□□□□ -2.23
CHMP3Q9Y3E7 MIR151B-201ENST00000584249 96 ntBASIC1.11□□□□□ -2.23
CHMP3Q9Y3E7 SNORD114-4-201ENST00000363962 75 ntBASIC1.1□□□□□ -2.23
CHMP3Q9Y3E7 snoU13.18-201ENST00000459483 104 ntBASIC1.1□□□□□ -2.23
CHMP3Q9Y3E7 MIR6857-201ENST00000613267 93 ntBASIC1.1□□□□□ -2.23
CHMP3Q9Y3E7 MIR7111-201ENST00000619751 72 ntBASIC1.1□□□□□ -2.23
CHMP3Q9Y3E7 MIR582-201ENST00000365731 98 ntBASIC1.09□□□□□ -2.23
CHMP3Q9Y3E7 RPL39P28-201ENST00000465655 155 ntBASIC1.09□□□□□ -2.23
CHMP3Q9Y3E7 AC103810.9-201ENST00000606688 112 ntBASIC1.09□□□□□ -2.23
CHMP3Q9Y3E7 MIR6739-201ENST00000622461 75 ntBASIC1.09□□□□□ -2.23
CHMP3Q9Y3E7 HMGN2P22-201ENST00000427588 175 ntBASIC1.08□□□□□ -2.24
CHMP3Q9Y3E7 SCARNA17.3-201ENST00000516381 125 ntBASIC1.08□□□□□ -2.24
CHMP3Q9Y3E7 AC092634.7-201ENST00000621022 103 ntBASIC1.08□□□□□ -2.24
CHMP3Q9Y3E7 AC021146.9-201ENST00000512503 156 ntBASIC1.07□□□□□ -2.24
CHMP3Q9Y3E7 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
CHMP3Q9Y3E7 RNU4-54P-201ENST00000516428 129 ntBASIC1.06□□□□□ -2.24
CHMP3Q9Y3E7 MIR4511-201ENST00000582784 87 ntBASIC1.06□□□□□ -2.24
CHMP3Q9Y3E7 MIR489-201ENST00000384923 84 ntBASIC1.05□□□□□ -2.24
CHMP3Q9Y3E7 MIR548E-201ENST00000408287 88 ntBASIC1.05□□□□□ -2.24
CHMP3Q9Y3E7 RNU6-1223P-201ENST00000517124 104 ntBASIC1.05□□□□□ -2.24
CHMP3Q9Y3E7 SNORD118-201ENST00000363593 134 ntBASIC1.04□□□□□ -2.24
CHMP3Q9Y3E7 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.03□□□□□ -2.24
CHMP3Q9Y3E7 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.03□□□□□ -2.24
CHMP3Q9Y3E7 AL157398.1-201ENST00000452981 186 ntBASIC1.03□□□□□ -2.24
CHMP3Q9Y3E7 RNU6-1232P-201ENST00000516299 86 ntBASIC1.03□□□□□ -2.24
CHMP3Q9Y3E7 CYP3A137P-201ENST00000562436 69 ntBASIC1.03□□□□□ -2.24
CHMP3Q9Y3E7 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC1.03□□□□□ -2.25
CHMP3Q9Y3E7 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC1.03□□□□□ -2.25
CHMP3Q9Y3E7 Y_RNA.375-201ENST00000365625 101 ntBASIC1.02□□□□□ -2.25
CHMP3Q9Y3E7 RNU6ATAC27P-201ENST00000408289 119 ntBASIC1.02□□□□□ -2.25
CHMP3Q9Y3E7 SNORA40.8-201ENST00000411034 126 ntBASIC1.02□□□□□ -2.25
CHMP3Q9Y3E7 AC022709.1-201ENST00000615967 87 ntBASIC1.02□□□□□ -2.25
CHMP3Q9Y3E7 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 247.4 ms