Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 RNA5SP484-201ENST00000458857 111 ntBASIC1.59□□□□□ -2.15
TRERF1Q96PN7 RNA5SP47-201ENST00000517230 109 ntBASIC1.59□□□□□ -2.15
TRERF1Q96PN7 MIR521-2-201ENST00000384818 87 ntBASIC1.58□□□□□ -2.16
TRERF1Q96PN7 RNU6-469P-201ENST00000516253 101 ntBASIC1.58□□□□□ -2.16
TRERF1Q96PN7 SNORA25-201ENST00000384384 134 ntBASIC1.57□□□□□ -2.16
TRERF1Q96PN7 RNU6-1162P-201ENST00000384443 104 ntBASIC1.57□□□□□ -2.16
TRERF1Q96PN7 RNU6-135P-201ENST00000516769 101 ntBASIC1.57□□□□□ -2.16
TRERF1Q96PN7 U2.7-201ENST00000619197 100 ntBASIC1.57□□□□□ -2.16
TRERF1Q96PN7 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC1.57□□□□□ -2.16
TRERF1Q96PN7 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.57□□□□□ -2.16
TRERF1Q96PN7 RNU6-753P-201ENST00000363926 107 ntBASIC1.56□□□□□ -2.16
TRERF1Q96PN7 SNORD12-201ENST00000391002 90 ntBASIC1.56□□□□□ -2.16
TRERF1Q96PN7 MIR1287-201ENST00000408492 90 ntBASIC1.56□□□□□ -2.16
TRERF1Q96PN7 U4.4-201ENST00000620626 117 ntBASIC1.56□□□□□ -2.16
TRERF1Q96PN7 Y_RNA.379-201ENST00000365653 102 ntBASIC1.55□□□□□ -2.16
TRERF1Q96PN7 SNORD105-201ENST00000386910 85 ntBASIC1.55□□□□□ -2.16
TRERF1Q96PN7 RPS29P23-201ENST00000458635 123 ntBASIC1.55□□□□□ -2.16
TRERF1Q96PN7 AC021146.9-201ENST00000512503 156 ntBASIC1.55□□□□□ -2.16
TRERF1Q96PN7 RNU7-174P-201ENST00000516248 59 ntBASIC1.55□□□□□ -2.16
TRERF1Q96PN7 MIR3678-201ENST00000578455 94 ntBASIC1.55□□□□□ -2.16
TRERF1Q96PN7 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
TRERF1Q96PN7 Y_RNA.250-201ENST00000364542 110 ntBASIC1.54□□□□□ -2.16
TRERF1Q96PN7 SNORA33.1-201ENST00000364957 130 ntBASIC1.54□□□□□ -2.16
TRERF1Q96PN7 SNORA8.2-201ENST00000384372 139 ntBASIC1.53□□□□□ -2.16
TRERF1Q96PN7 U7.7-201ENST00000459276 60 ntBASIC1.53□□□□□ -2.16
TRERF1Q96PN7 SNORD124-201ENST00000459577 104 ntBASIC1.53□□□□□ -2.16
TRERF1Q96PN7 SNORD114-4-201ENST00000363962 75 ntBASIC1.52□□□□□ -2.17
TRERF1Q96PN7 MIR499A-201ENST00000384903 122 ntBASIC1.52□□□□□ -2.17
TRERF1Q96PN7 MIR150-201ENST00000385048 84 ntBASIC1.52□□□□□ -2.17
TRERF1Q96PN7 MIR517B-201ENST00000385102 67 ntBASIC1.52□□□□□ -2.17
TRERF1Q96PN7 RNU6-1110P-201ENST00000516462 101 ntBASIC1.52□□□□□ -2.17
TRERF1Q96PN7 MIR26B-201ENST00000362251 77 ntBASIC1.51□□□□□ -2.17
TRERF1Q96PN7 RNU6-698P-201ENST00000363523 107 ntBASIC1.51□□□□□ -2.17
TRERF1Q96PN7 RNU6-34P-201ENST00000364874 107 ntBASIC1.51□□□□□ -2.17
TRERF1Q96PN7 MIR582-201ENST00000365731 98 ntBASIC1.51□□□□□ -2.17
TRERF1Q96PN7 Y_RNA.633-201ENST00000459107 95 ntBASIC1.51□□□□□ -2.17
TRERF1Q96PN7 MIR3612-201ENST00000579753 87 ntBASIC1.51□□□□□ -2.17
TRERF1Q96PN7 MIR548AE1-201ENST00000583292 70 ntBASIC1.51□□□□□ -2.17
TRERF1Q96PN7 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC1.51□□□□□ -2.17
TRERF1Q96PN7 Y_RNA.125-201ENST00000363371 111 ntBASIC1.5□□□□□ -2.17
TRERF1Q96PN7 MIR652-201ENST00000385278 98 ntBASIC1.5□□□□□ -2.17
TRERF1Q96PN7 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.5□□□□□ -2.17
TRERF1Q96PN7 SCARNA16.5-201ENST00000517114 183 ntBASIC1.5□□□□□ -2.17
TRERF1Q96PN7 MIR3660-201ENST00000584845 100 ntBASIC1.5□□□□□ -2.17
TRERF1Q96PN7 MIR6078-201ENST00000611069 100 ntBASIC1.5□□□□□ -2.17
TRERF1Q96PN7 RNU6-520P-201ENST00000384717 104 ntBASIC1.49□□□□□ -2.17
TRERF1Q96PN7 MIR573-201ENST00000384964 99 ntBASIC1.49□□□□□ -2.17
TRERF1Q96PN7 SNORD113-2-201ENST00000391082 72 ntBASIC1.49□□□□□ -2.17
TRERF1Q96PN7 uc_338.10-201ENST00000621872 182 ntBASIC1.49□□□□□ -2.17
TRERF1Q96PN7 AL162376.1-201ENST00000624117 175 ntBASIC1.49□□□□□ -2.17
TRERF1Q96PN7 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.49□□□□□ -2.17
TRERF1Q96PN7 MIR1276-201ENST00000408707 83 ntBASIC1.48□□□□□ -2.17
TRERF1Q96PN7 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.48□□□□□ -2.17
TRERF1Q96PN7 SNORD26-201ENST00000384147 75 ntBASIC1.47□□□□□ -2.17
TRERF1Q96PN7 RNU6-980P-201ENST00000516925 103 ntBASIC1.47□□□□□ -2.17
TRERF1Q96PN7 RNU6-35P-201ENST00000384530 107 ntBASIC1.46□□□□□ -2.18
TRERF1Q96PN7 SNORA41B-201ENST00000384785 128 ntBASIC1.46□□□□□ -2.18
TRERF1Q96PN7 MIR758-201ENST00000390227 88 ntBASIC1.46□□□□□ -2.18
TRERF1Q96PN7 RNU6-1246P-201ENST00000391064 107 ntBASIC1.46□□□□□ -2.18
TRERF1Q96PN7 MIR548E-201ENST00000408287 88 ntBASIC1.46□□□□□ -2.18
TRERF1Q96PN7 SCARNA17.3-201ENST00000516381 125 ntBASIC1.46□□□□□ -2.18
TRERF1Q96PN7 MIR4473-201ENST00000583731 91 ntBASIC1.46□□□□□ -2.18
TRERF1Q96PN7 SNORA63.6-201ENST00000364921 119 ntBASIC1.45□□□□□ -2.18
TRERF1Q96PN7 Y_RNA.325-201ENST00000365171 122 ntBASIC1.45□□□□□ -2.18
TRERF1Q96PN7 DLEU2_4.2-201ENST00000616613 58 ntBASIC1.45□□□□□ -2.18
TRERF1Q96PN7 MIR6828-201ENST00000636181 60 ntBASIC1.45□□□□□ -2.18
TRERF1Q96PN7 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.44□□□□□ -2.18
TRERF1Q96PN7 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.44□□□□□ -2.18
TRERF1Q96PN7 SNORA36.1-201ENST00000363424 132 ntBASIC1.44□□□□□ -2.18
TRERF1Q96PN7 SNORA15B-2-201ENST00000384058 135 ntBASIC1.44□□□□□ -2.18
TRERF1Q96PN7 SNORA15B-1-201ENST00000384334 135 ntBASIC1.44□□□□□ -2.18
TRERF1Q96PN7 RNA5SP102-201ENST00000516865 106 ntBASIC1.44□□□□□ -2.18
TRERF1Q96PN7 Y_RNA.407-201ENST00000383986 113 ntBASIC1.43□□□□□ -2.18
TRERF1Q96PN7 FABP5P4-201ENST00000437203 171 ntBASIC1.43□□□□□ -2.18
TRERF1Q96PN7 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.43□□□□□ -2.18
TRERF1Q96PN7 MIR6504-201ENST00000613520 61 ntBASIC1.43□□□□□ -2.18
TRERF1Q96PN7 SNORA9.1-201ENST00000362412 131 ntBASIC1.42□□□□□ -2.18
TRERF1Q96PN7 RNA5SP227-201ENST00000516184 113 ntBASIC1.42□□□□□ -2.18
TRERF1Q96PN7 AC068338.1-201ENST00000565567 176 ntBASIC1.42□□□□□ -2.18
TRERF1Q96PN7 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC1.42□□□□□ -2.18
TRERF1Q96PN7 AC090617.8-201ENST00000623339 167 ntBASIC1.42□□□□□ -2.18
TRERF1Q96PN7 RNU6-231P-201ENST00000517122 103 ntBASIC1.41□□□□□ -2.18
TRERF1Q96PN7 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.41□□□□□ -2.18
TRERF1Q96PN7 Y_RNA.246-201ENST00000364495 108 ntBASIC1.4□□□□□ -2.19
TRERF1Q96PN7 RNU7-119P-201ENST00000459279 63 ntBASIC1.4□□□□□ -2.19
TRERF1Q96PN7 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.39□□□□□ -2.19
TRERF1Q96PN7 MIR19B1-201ENST00000384829 87 ntBASIC1.39□□□□□ -2.19
TRERF1Q96PN7 AC006210.1-201ENST00000424882 111 ntBASIC1.39□□□□□ -2.19
TRERF1Q96PN7 RNA5SP404-201ENST00000517118 132 ntBASIC1.39□□□□□ -2.19
TRERF1Q96PN7 RNU4-33P-201ENST00000364316 85 ntBASIC1.38□□□□□ -2.19
TRERF1Q96PN7 SNORD110-201ENST00000408189 75 ntBASIC1.38□□□□□ -2.19
TRERF1Q96PN7 SNORA70.25-201ENST00000612741 95 ntBASIC1.38□□□□□ -2.19
TRERF1Q96PN7 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
TRERF1Q96PN7 MIR96-201ENST00000362288 78 ntBASIC1.37□□□□□ -2.19
TRERF1Q96PN7 MIR18A-201ENST00000362310 71 ntBASIC1.37□□□□□ -2.19
TRERF1Q96PN7 Y_RNA.224-201ENST00000364308 111 ntBASIC1.37□□□□□ -2.19
TRERF1Q96PN7 RNU6-930P-201ENST00000390938 100 ntBASIC1.37□□□□□ -2.19
TRERF1Q96PN7 SNORD116.2-201ENST00000391251 93 ntBASIC1.37□□□□□ -2.19
TRERF1Q96PN7 CYP3A54P-201ENST00000566950 75 ntBASIC1.37□□□□□ -2.19
TRERF1Q96PN7 MIR4752-201ENST00000579672 72 ntBASIC1.37□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms