Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MIR3612-201ENST00000579753 87 ntBASIC1.02□□□□□ -2.25
USP39Q53GS9 RNU6V-201ENST00000384105 107 ntBASIC1.01□□□□□ -2.25
USP39Q53GS9 MIR200A-201ENST00000384875 90 ntBASIC1.01□□□□□ -2.25
USP39Q53GS9 RNU6-630P-201ENST00000391258 106 ntBASIC1.01□□□□□ -2.25
USP39Q53GS9 SNORA40.17-201ENST00000517256 115 ntBASIC1.01□□□□□ -2.25
USP39Q53GS9 MIR373-201ENST00000362273 69 ntBASIC1□□□□□ -2.25
USP39Q53GS9 RNU6-1216P-201ENST00000362590 107 ntBASIC1□□□□□ -2.25
USP39Q53GS9 RNU6-895P-201ENST00000384125 103 ntBASIC1□□□□□ -2.25
USP39Q53GS9 Y_RNA.443-201ENST00000384135 111 ntBASIC1□□□□□ -2.25
USP39Q53GS9 MT-TY-201ENST00000387409 66 ntBASIC1□□□□□ -2.25
USP39Q53GS9 RNU6-982P-201ENST00000516216 102 ntBASIC1□□□□□ -2.25
USP39Q53GS9 RNU6-469P-201ENST00000516253 101 ntBASIC1□□□□□ -2.25
USP39Q53GS9 RNU4-38P-201ENST00000364472 129 ntBASIC0.99□□□□□ -2.25
USP39Q53GS9 MIR203A-201ENST00000384836 110 ntBASIC0.99□□□□□ -2.25
USP39Q53GS9 MIR532-201ENST00000385025 91 ntBASIC0.99□□□□□ -2.25
USP39Q53GS9 RNU7-74P-201ENST00000459104 62 ntBASIC0.99□□□□□ -2.25
USP39Q53GS9 CYP3A137P-201ENST00000562436 69 ntBASIC0.99□□□□□ -2.25
USP39Q53GS9 MIR6509-201ENST00000614603 85 ntBASIC0.99□□□□□ -2.25
USP39Q53GS9 SNORA25.4-201ENST00000363666 124 ntBASIC0.98□□□□□ -2.25
USP39Q53GS9 RNU6-716P-201ENST00000365621 103 ntBASIC0.98□□□□□ -2.25
USP39Q53GS9 RNU6-269P-201ENST00000391077 97 ntBASIC0.98□□□□□ -2.25
USP39Q53GS9 RNA5SP255-201ENST00000516370 107 ntBASIC0.98□□□□□ -2.25
USP39Q53GS9 MIR6828-201ENST00000636181 60 ntBASIC0.98□□□□□ -2.25
USP39Q53GS9 RNA5SP325-201ENST00000363756 130 ntBASIC0.97□□□□□ -2.25
USP39Q53GS9 RNU1-141P-201ENST00000364623 158 ntBASIC0.97□□□□□ -2.25
USP39Q53GS9 RNA5SP436-201ENST00000516020 115 ntBASIC0.97□□□□□ -2.25
USP39Q53GS9 SCARNA16.5-201ENST00000517114 183 ntBASIC0.97□□□□□ -2.25
USP39Q53GS9 MIR3657-201ENST00000584818 117 ntBASIC0.97□□□□□ -2.25
USP39Q53GS9 AC103810.9-201ENST00000606688 112 ntBASIC0.97□□□□□ -2.25
USP39Q53GS9 AL109933.3-201ENST00000619095 188 ntBASIC0.97□□□□□ -2.25
USP39Q53GS9 RNU6-1187P-201ENST00000364771 110 ntBASIC0.96□□□□□ -2.26
USP39Q53GS9 SNORD114-24-201ENST00000365029 72 ntBASIC0.96□□□□□ -2.26
USP39Q53GS9 MIR548L-201ENST00000408303 86 ntBASIC0.96□□□□□ -2.26
USP39Q53GS9 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.96□□□□□ -2.26
USP39Q53GS9 AC025627.3-201ENST00000582078 182 ntBASIC0.96□□□□□ -2.26
USP39Q53GS9 AC073869.9-201ENST00000641610 120 ntBASIC0.96□□□□□ -2.26
USP39Q53GS9 MIR18A-201ENST00000362310 71 ntBASIC0.95□□□□□ -2.26
USP39Q53GS9 SNORA36.1-201ENST00000363424 132 ntBASIC0.95□□□□□ -2.26
USP39Q53GS9 RNU6-260P-201ENST00000384092 107 ntBASIC0.95□□□□□ -2.26
USP39Q53GS9 SNORA8.2-201ENST00000384372 139 ntBASIC0.95□□□□□ -2.26
USP39Q53GS9 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.95□□□□□ -2.26
USP39Q53GS9 RNA5SP484-201ENST00000458857 111 ntBASIC0.95□□□□□ -2.26
USP39Q53GS9 RPL39P28-201ENST00000465655 155 ntBASIC0.95□□□□□ -2.26
USP39Q53GS9 MIR4460-201ENST00000577862 86 ntBASIC0.95□□□□□ -2.26
USP39Q53GS9 MIR3973-201ENST00000579824 107 ntBASIC0.95□□□□□ -2.26
USP39Q53GS9 AL162376.1-201ENST00000624117 175 ntBASIC0.95□□□□□ -2.26
USP39Q53GS9 RNU6-990P-201ENST00000364385 104 ntBASIC0.94□□□□□ -2.26
USP39Q53GS9 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
USP39Q53GS9 SNORD99-201ENST00000408612 74 ntBASIC0.94□□□□□ -2.26
USP39Q53GS9 AC018659.1-201ENST00000551083 169 ntBASIC0.94□□□□□ -2.26
USP39Q53GS9 RN7SL793P-201ENST00000583259 296 ntBASIC0.94□□□□□ -2.26
USP39Q53GS9 MIR9-2-201ENST00000384838 87 ntBASIC0.93□□□□□ -2.26
USP39Q53GS9 AC011195.1-201ENST00000578177 177 ntBASIC0.93□□□□□ -2.26
USP39Q53GS9 MIR216A-201ENST00000385063 110 ntBASIC0.92□□□□□ -2.26
USP39Q53GS9 RNU5B-6P-201ENST00000516765 68 ntBASIC0.92□□□□□ -2.26
USP39Q53GS9 MIR4511-201ENST00000582784 87 ntBASIC0.92□□□□□ -2.26
USP39Q53GS9 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.92□□□□□ -2.26
USP39Q53GS9 SNORA2.1-201ENST00000363089 137 ntBASIC0.91□□□□□ -2.26
USP39Q53GS9 RNU6-645P-201ENST00000364649 106 ntBASIC0.9□□□□□ -2.27
USP39Q53GS9 MIR4698-201ENST00000577795 80 ntBASIC0.9□□□□□ -2.27
USP39Q53GS9 AC069503.3-201ENST00000618674 145 ntBASIC0.9□□□□□ -2.27
USP39Q53GS9 AC103706.3-201ENST00000636297 85 ntBASIC0.9□□□□□ -2.27
USP39Q53GS9 RNU6-656P-201ENST00000516785 107 ntBASIC0.89□□□□□ -2.27
USP39Q53GS9 RNA5SP94-201ENST00000516917 108 ntBASIC0.89□□□□□ -2.27
USP39Q53GS9 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.89□□□□□ -2.27
USP39Q53GS9 MIR7107-201ENST00000611489 80 ntBASIC0.89□□□□□ -2.27
USP39Q53GS9 MIR6739-201ENST00000622461 75 ntBASIC0.89□□□□□ -2.27
USP39Q53GS9 RNA5SP227-201ENST00000516184 113 ntBASIC0.88□□□□□ -2.27
USP39Q53GS9 RNA5SP147-201ENST00000516493 109 ntBASIC0.88□□□□□ -2.27
USP39Q53GS9 RNA5SP268-201ENST00000516828 124 ntBASIC0.88□□□□□ -2.27
USP39Q53GS9 RNU6-668P-201ENST00000364180 107 ntBASIC0.87□□□□□ -2.27
USP39Q53GS9 Y_RNA.375-201ENST00000365625 101 ntBASIC0.87□□□□□ -2.27
USP39Q53GS9 AC110620.1-201ENST00000416042 228 ntBASIC0.87□□□□□ -2.27
USP39Q53GS9 MTND4LP1-201ENST00000446263 157 ntBASIC0.87□□□□□ -2.27
USP39Q53GS9 ACA64.5-201ENST00000516207 127 ntBASIC0.87□□□□□ -2.27
USP39Q53GS9 MIR4653-201ENST00000585107 83 ntBASIC0.87□□□□□ -2.27
USP39Q53GS9 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.87□□□□□ -2.27
USP39Q53GS9 AL353765.1-201ENST00000605514 183 ntBASIC0.86□□□□□ -2.27
USP39Q53GS9 RNU4-45P-201ENST00000365469 141 ntBASIC0.85□□□□□ -2.27
USP39Q53GS9 RNU6-669P-201ENST00000365575 107 ntBASIC0.85□□□□□ -2.27
USP39Q53GS9 MIR548AE1-201ENST00000583292 70 ntBASIC0.85□□□□□ -2.27
USP39Q53GS9 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.85□□□□□ -2.27
USP39Q53GS9 SNORD114-4-201ENST00000363962 75 ntBASIC0.84□□□□□ -2.27
USP39Q53GS9 RNY1P8-201ENST00000383970 114 ntBASIC0.84□□□□□ -2.27
USP39Q53GS9 MIR608-201ENST00000384820 100 ntBASIC0.84□□□□□ -2.27
USP39Q53GS9 PSMC1P5-201ENST00000512850 177 ntBASIC0.84□□□□□ -2.27
USP39Q53GS9 MIR4714-201ENST00000580728 77 ntBASIC0.84□□□□□ -2.27
USP39Q53GS9 RNU1-29P-201ENST00000606574 126 ntBASIC0.84□□□□□ -2.27
USP39Q53GS9 SNORA70.25-201ENST00000612741 95 ntBASIC0.84□□□□□ -2.27
USP39Q53GS9 MIR652-201ENST00000385278 98 ntBASIC0.83□□□□□ -2.28
USP39Q53GS9 RNA5SP222-201ENST00000411039 105 ntBASIC0.83□□□□□ -2.28
USP39Q53GS9 snoU13.13-201ENST00000458842 104 ntBASIC0.83□□□□□ -2.28
USP39Q53GS9 Y_RNA.250-201ENST00000364542 110 ntBASIC0.82□□□□□ -2.28
USP39Q53GS9 SNORD110-201ENST00000408189 75 ntBASIC0.82□□□□□ -2.28
USP39Q53GS9 Y_RNA.633-201ENST00000459107 95 ntBASIC0.82□□□□□ -2.28
USP39Q53GS9 RNU6-542P-201ENST00000516405 103 ntBASIC0.82□□□□□ -2.28
USP39Q53GS9 MIR4752-201ENST00000579672 72 ntBASIC0.82□□□□□ -2.28
USP39Q53GS9 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
USP39Q53GS9 SNORD114-2-201ENST00000363953 78 ntBASIC0.81□□□□□ -2.28
USP39Q53GS9 RNA5SP517-201ENST00000364724 117 ntBASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 314.2 ms