Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 Y_RNA.409-201ENST00000383990 98 ntBASIC-1.3□□□□□ -2.62
CHD9Q3L8U1 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.3□□□□□ -2.62
CHD9Q3L8U1 MIR34C-201ENST00000384831 77 ntBASIC-1.3□□□□□ -2.62
CHD9Q3L8U1 MIR620-201ENST00000385232 95 ntBASIC-1.3□□□□□ -2.62
CHD9Q3L8U1 RNU6-521P-201ENST00000516663 105 ntBASIC-1.3□□□□□ -2.62
CHD9Q3L8U1 RNU6-1149P-201ENST00000516810 97 ntBASIC-1.3□□□□□ -2.62
CHD9Q3L8U1 AC006254.2-201ENST00000603259 279 ntBASIC-1.3□□□□□ -2.62
CHD9Q3L8U1 AC093424.1-201ENST00000604999 338 ntBASIC-1.3□□□□□ -2.62
CHD9Q3L8U1 DLEU2_3.1-201ENST00000620005 73 ntBASIC-1.3□□□□□ -2.62
CHD9Q3L8U1 AL603755.1-201ENST00000619504 163 ntBASIC-1.31□□□□□ -2.62
CHD9Q3L8U1 RNU6-1040P-201ENST00000383974 107 ntBASIC-1.31□□□□□ -2.62
CHD9Q3L8U1 Y_RNA.541-201ENST00000384640 113 ntBASIC-1.31□□□□□ -2.62
CHD9Q3L8U1 U3.27-201ENST00000391237 200 ntBASIC-1.31□□□□□ -2.62
CHD9Q3L8U1 AL121914.1-201ENST00000450188 156 ntBASIC-1.31□□□□□ -2.62
CHD9Q3L8U1 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC-1.31□□□□□ -2.62
CHD9Q3L8U1 RNU6-1238P-201ENST00000517215 102 ntBASIC-1.31□□□□□ -2.62
CHD9Q3L8U1 AP002795.1-201ENST00000534879 84 ntBASIC-1.31□□□□□ -2.62
CHD9Q3L8U1 VN1R91P-201ENST00000594377 169 ntBASIC-1.31□□□□□ -2.62
CHD9Q3L8U1 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-1.31□□□□□ -2.62
CHD9Q3L8U1 SNORD115-19-201ENST00000363098 82 ntBASIC-1.32□□□□□ -2.62
CHD9Q3L8U1 SNORD115-18-201ENST00000363293 82 ntBASIC-1.32□□□□□ -2.62
CHD9Q3L8U1 SNORD115-17-201ENST00000364612 82 ntBASIC-1.32□□□□□ -2.62
CHD9Q3L8U1 RNU6-260P-201ENST00000384092 107 ntBASIC-1.32□□□□□ -2.62
CHD9Q3L8U1 MIR616-201ENST00000385293 97 ntBASIC-1.32□□□□□ -2.62
CHD9Q3L8U1 MIR548G-201ENST00000408442 89 ntBASIC-1.32□□□□□ -2.62
CHD9Q3L8U1 SNORA19.1-201ENST00000410656 129 ntBASIC-1.32□□□□□ -2.62
CHD9Q3L8U1 Y_RNA.633-201ENST00000459107 95 ntBASIC-1.32□□□□□ -2.62
CHD9Q3L8U1 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.32□□□□□ -2.62
CHD9Q3L8U1 MIR5683-201ENST00000636514 76 ntBASIC-1.32□□□□□ -2.62
CHD9Q3L8U1 RNU6-458P-201ENST00000384179 107 ntBASIC-1.32□□□□□ -2.62
CHD9Q3L8U1 Y_RNA.584-201ENST00000391090 114 ntBASIC-1.32□□□□□ -2.62
CHD9Q3L8U1 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC-1.32□□□□□ -2.62
CHD9Q3L8U1 U6.58-201ENST00000613107 107 ntBASIC-1.32□□□□□ -2.62
CHD9Q3L8U1 AC138305.3-201ENST00000624988 240 ntBASIC-1.32□□□□□ -2.62
CHD9Q3L8U1 MIR6874-201ENST00000635894 71 ntBASIC-1.32□□□□□ -2.62
CHD9Q3L8U1 MIR4773-1-201ENST00000637203 78 ntBASIC-1.32□□□□□ -2.62
CHD9Q3L8U1 Y_RNA.83-201ENST00000363005 113 ntBASIC-1.33□□□□□ -2.62
CHD9Q3L8U1 RNU6-1046P-201ENST00000516538 107 ntBASIC-1.33□□□□□ -2.62
CHD9Q3L8U1 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC-1.33□□□□□ -2.62
CHD9Q3L8U1 AC108081.1-201ENST00000604358 221 ntBASIC-1.33□□□□□ -2.62
CHD9Q3L8U1 U6.96-201ENST00000636425 70 ntBASIC-1.33□□□□□ -2.62
CHD9Q3L8U1 MIRLET7F1-201ENST00000362202 87 ntBASIC-1.33□□□□□ -2.62
CHD9Q3L8U1 Y_RNA.41-201ENST00000362646 102 ntBASIC-1.33□□□□□ -2.62
CHD9Q3L8U1 Y_RNA.173-201ENST00000363776 113 ntBASIC-1.33□□□□□ -2.62
CHD9Q3L8U1 Y_RNA.359-201ENST00000365498 102 ntBASIC-1.33□□□□□ -2.62
CHD9Q3L8U1 Y_RNA.569-201ENST00000384749 103 ntBASIC-1.33□□□□□ -2.62
CHD9Q3L8U1 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-1.33□□□□□ -2.62
CHD9Q3L8U1 SNORD58B-201ENST00000607313 66 ntBASIC-1.33□□□□□ -2.62
CHD9Q3L8U1 RNU4-90P-201ENST00000362773 141 ntBASIC-1.33□□□□□ -2.62
CHD9Q3L8U1 RNU6-990P-201ENST00000364385 104 ntBASIC-1.33□□□□□ -2.62
CHD9Q3L8U1 RNU6-662P-201ENST00000384253 104 ntBASIC-1.33□□□□□ -2.62
CHD9Q3L8U1 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC-1.33□□□□□ -2.62
CHD9Q3L8U1 AP002392.1-201ENST00000537692 208 ntBASIC-1.33□□□□□ -2.62
CHD9Q3L8U1 Y_RNA.153-201ENST00000363615 91 ntBASIC-1.34□□□□□ -2.62
CHD9Q3L8U1 RNU6-259P-201ENST00000383999 107 ntBASIC-1.34□□□□□ -2.62
CHD9Q3L8U1 AC012531.4-201ENST00000616509 177 ntBASIC-1.34□□□□□ -2.62
CHD9Q3L8U1 RNU6-937P-201ENST00000384325 106 ntBASIC-1.34□□□□□ -2.62
CHD9Q3L8U1 RNU6-519P-201ENST00000410590 108 ntBASIC-1.34□□□□□ -2.62
CHD9Q3L8U1 U6.106-201ENST00000636360 105 ntBASIC-1.34□□□□□ -2.62
CHD9Q3L8U1 RNU6-832P-201ENST00000363319 107 ntBASIC-1.35□□□□□ -2.63
CHD9Q3L8U1 Y_RNA.152-201ENST00000363578 100 ntBASIC-1.35□□□□□ -2.63
CHD9Q3L8U1 RNU6-80P-201ENST00000384195 107 ntBASIC-1.35□□□□□ -2.63
CHD9Q3L8U1 RNU7-154P-201ENST00000516194 62 ntBASIC-1.35□□□□□ -2.63
CHD9Q3L8U1 Y_RNA.88-201ENST00000363029 99 ntBASIC-1.35□□□□□ -2.63
CHD9Q3L8U1 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.35□□□□□ -2.63
CHD9Q3L8U1 RNU6-807P-201ENST00000516805 107 ntBASIC-1.35□□□□□ -2.63
CHD9Q3L8U1 MIR759-201ENST00000390224 91 ntBASIC-1.36□□□□□ -2.63
CHD9Q3L8U1 MIR548U-201ENST00000390728 81 ntBASIC-1.36□□□□□ -2.63
CHD9Q3L8U1 AC090616.4-201ENST00000448026 115 ntBASIC-1.36□□□□□ -2.63
CHD9Q3L8U1 Y_RNA.661-201ENST00000516003 99 ntBASIC-1.36□□□□□ -2.63
CHD9Q3L8U1 RNU6-1234P-201ENST00000516877 103 ntBASIC-1.36□□□□□ -2.63
CHD9Q3L8U1 MIR4272-201ENST00000635924 64 ntBASIC-1.36□□□□□ -2.63
CHD9Q3L8U1 SNORD81.2-201ENST00000365153 76 ntBASIC-1.36□□□□□ -2.63
CHD9Q3L8U1 Y_RNA.573-201ENST00000384763 105 ntBASIC-1.36□□□□□ -2.63
CHD9Q3L8U1 RNU6-62P-201ENST00000516526 102 ntBASIC-1.36□□□□□ -2.63
CHD9Q3L8U1 RNU6-1018P-201ENST00000516577 106 ntBASIC-1.36□□□□□ -2.63
CHD9Q3L8U1 SCARNA24.2-201ENST00000516968 130 ntBASIC-1.36□□□□□ -2.63
CHD9Q3L8U1 AC120024.2-201ENST00000576526 175 ntBASIC-1.36□□□□□ -2.63
CHD9Q3L8U1 Y_RNA.134-201ENST00000363435 105 ntBASIC-1.37□□□□□ -2.63
CHD9Q3L8U1 Y_RNA.286-201ENST00000364813 102 ntBASIC-1.37□□□□□ -2.63
CHD9Q3L8U1 MT-TW-201ENST00000387382 68 ntBASIC-1.37□□□□□ -2.63
CHD9Q3L8U1 RNU6-1307P-201ENST00000391012 103 ntBASIC-1.37□□□□□ -2.63
CHD9Q3L8U1 FGF7P7-201ENST00000514120 227 ntBASIC-1.37□□□□□ -2.63
CHD9Q3L8U1 RNU7-123P-201ENST00000515911 60 ntBASIC-1.37□□□□□ -2.63
CHD9Q3L8U1 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC-1.37□□□□□ -2.63
CHD9Q3L8U1 Y_RNA.217-201ENST00000364214 105 ntBASIC-1.37□□□□□ -2.63
CHD9Q3L8U1 RNU1-115P-201ENST00000365329 160 ntBASIC-1.37□□□□□ -2.63
CHD9Q3L8U1 SNORA63.7-201ENST00000365579 123 ntBASIC-1.37□□□□□ -2.63
CHD9Q3L8U1 RNU6-1039P-201ENST00000383931 107 ntBASIC-1.37□□□□□ -2.63
CHD9Q3L8U1 RNU6-695P-201ENST00000391157 104 ntBASIC-1.37□□□□□ -2.63
CHD9Q3L8U1 SNORD19-201ENST00000391191 68 ntBASIC-1.37□□□□□ -2.63
CHD9Q3L8U1 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.37□□□□□ -2.63
CHD9Q3L8U1 Y_RNA.641-201ENST00000459414 105 ntBASIC-1.37□□□□□ -2.63
CHD9Q3L8U1 Y_RNA.519-201ENST00000384553 102 ntBASIC-1.37□□□□□ -2.63
CHD9Q3L8U1 RNU6-400P-201ENST00000391173 106 ntBASIC-1.37□□□□□ -2.63
CHD9Q3L8U1 RNU7-164P-201ENST00000459221 62 ntBASIC-1.37□□□□□ -2.63
CHD9Q3L8U1 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.37□□□□□ -2.63
CHD9Q3L8U1 SNORD50.2-201ENST00000365465 70 ntBASIC-1.38□□□□□ -2.63
CHD9Q3L8U1 Y_RNA.693-201ENST00000516641 110 ntBASIC-1.38□□□□□ -2.63
CHD9Q3L8U1 RNU6-1174P-201ENST00000517278 101 ntBASIC-1.38□□□□□ -2.63
Retrieved 100 of 98,524 protein–RNA pairs in 190 ms