Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 SNORA51.5-201ENST00000384126 131 ntBASIC0.06□□□□□ -2.4
PDX1P52945 SNORD116-21-201ENST00000384507 92 ntBASIC0.06□□□□□ -2.4
PDX1P52945 MIR181B2-201ENST00000385004 89 ntBASIC0.06□□□□□ -2.4
PDX1P52945 SNORD110-201ENST00000408189 75 ntBASIC0.06□□□□□ -2.4
PDX1P52945 HMGN2P22-201ENST00000427588 175 ntBASIC0.06□□□□□ -2.4
PDX1P52945 AC008267.6-201ENST00000441664 139 ntBASIC0.06□□□□□ -2.4
PDX1P52945 MIR2113-201ENST00000459007 91 ntBASIC0.06□□□□□ -2.4
PDX1P52945 snoU13.11-201ENST00000459219 104 ntBASIC0.06□□□□□ -2.4
PDX1P52945 MIR548AD-201ENST00000584780 82 ntBASIC0.06□□□□□ -2.4
PDX1P52945 RNA5SP476-201ENST00000516613 103 ntBASIC0.05□□□□□ -2.4
PDX1P52945 AC141557.1-201ENST00000540982 400 ntBASIC0.05□□□□□ -2.4
PDX1P52945 MIR4677-201ENST00000584153 80 ntBASIC0.05□□□□□ -2.4
PDX1P52945 AC025521.1-201ENST00000621624 286 ntBASIC0.05□□□□□ -2.4
PDX1P52945 RNU1-141P-201ENST00000364623 158 ntBASIC0.04□□□□□ -2.4
PDX1P52945 MIR329-2-201ENST00000385029 84 ntBASIC0.04□□□□□ -2.4
PDX1P52945 MIR617-201ENST00000385030 97 ntBASIC0.04□□□□□ -2.4
PDX1P52945 AC093423.1-201ENST00000440817 142 ntBASIC0.04□□□□□ -2.4
PDX1P52945 RNU7-74P-201ENST00000459104 62 ntBASIC0.04□□□□□ -2.4
PDX1P52945 RNU6-287P-201ENST00000516230 98 ntBASIC0.04□□□□□ -2.4
PDX1P52945 MIR4667-201ENST00000578933 66 ntBASIC0.04□□□□□ -2.4
PDX1P52945 MIR4768-201ENST00000585270 74 ntBASIC0.04□□□□□ -2.4
PDX1P52945 RNU6-86P-201ENST00000606534 107 ntBASIC0.04□□□□□ -2.4
PDX1P52945 Y_RNA.283-201ENST00000364798 112 ntBASIC0.03□□□□□ -2.4
PDX1P52945 RNU6-466P-201ENST00000391224 103 ntBASIC0.03□□□□□ -2.4
PDX1P52945 Y_RNA.596-201ENST00000410462 109 ntBASIC0.03□□□□□ -2.4
PDX1P52945 RNU6-782P-201ENST00000516852 104 ntBASIC0.03□□□□□ -2.4
PDX1P52945 MTRNR2L2-201ENST00000604882 87 ntBASIC0.03□□□□□ -2.4
PDX1P52945 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.03□□□□□ -2.4
PDX1P52945 Y_RNA.125-201ENST00000363371 111 ntBASIC0.02□□□□□ -2.41
PDX1P52945 RNU6-1125P-201ENST00000363601 107 ntBASIC0.02□□□□□ -2.41
PDX1P52945 RNU6-1107P-201ENST00000364817 104 ntBASIC0.02□□□□□ -2.41
PDX1P52945 RNU6-1014P-201ENST00000383940 103 ntBASIC0.02□□□□□ -2.41
PDX1P52945 RNU6-480P-201ENST00000384332 107 ntBASIC0.02□□□□□ -2.41
PDX1P52945 MIR593-201ENST00000384856 100 ntBASIC0.02□□□□□ -2.41
PDX1P52945 SNORA19.1-201ENST00000410656 129 ntBASIC0.02□□□□□ -2.41
PDX1P52945 MIR3910-1-201ENST00000580936 111 ntBASIC0.02□□□□□ -2.41
PDX1P52945 MIR3925-201ENST00000584674 77 ntBASIC0.02□□□□□ -2.41
PDX1P52945 MIR548Z-201ENST00000584743 97 ntBASIC0.02□□□□□ -2.41
PDX1P52945 U7.6-201ENST00000610841 64 ntBASIC0.02□□□□□ -2.41
PDX1P52945 RNU6-161P-201ENST00000363051 106 ntBASIC0.01□□□□□ -2.41
PDX1P52945 Y_RNA.207-201ENST00000364142 106 ntBASIC0.01□□□□□ -2.41
PDX1P52945 RNU6-1144P-201ENST00000384247 104 ntBASIC0.01□□□□□ -2.41
PDX1P52945 Y_RNA.467-201ENST00000384297 102 ntBASIC0.01□□□□□ -2.41
PDX1P52945 RNU6-35P-201ENST00000384530 107 ntBASIC0.01□□□□□ -2.41
PDX1P52945 RNU6-476P-201ENST00000384726 107 ntBASIC0.01□□□□□ -2.41
PDX1P52945 MIR4473-201ENST00000583731 91 ntBASIC0.01□□□□□ -2.41
PDX1P52945 MIR4290-201ENST00000583807 95 ntBASIC0.01□□□□□ -2.41
PDX1P52945 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.01□□□□□ -2.41
PDX1P52945 Y_RNA.95-201ENST00000363079 95 ntBASIC0□□□□□ -2.41
PDX1P52945 SNORD45B-201ENST00000364617 72 ntBASIC0□□□□□ -2.41
PDX1P52945 MIR145-201ENST00000384967 88 ntBASIC0□□□□□ -2.41
PDX1P52945 MIR610-201ENST00000385139 96 ntBASIC0□□□□□ -2.41
PDX1P52945 MIR371B-201ENST00000638082 66 ntBASIC0□□□□□ -2.41
PDX1P52945 SNORD114-16-201ENST00000363044 70 ntBASIC-0.01□□□□□ -2.41
PDX1P52945 RNU6-22P-201ENST00000384355 107 ntBASIC-0.01□□□□□ -2.41
PDX1P52945 Y_RNA.648-201ENST00000459455 110 ntBASIC-0.01□□□□□ -2.41
PDX1P52945 RNU6-75P-201ENST00000515944 104 ntBASIC-0.01□□□□□ -2.41
PDX1P52945 RNU6-795P-201ENST00000516323 103 ntBASIC-0.01□□□□□ -2.41
PDX1P52945 AL513043.2-201ENST00000573941 143 ntBASIC-0.01□□□□□ -2.41
PDX1P52945 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-0.01□□□□□ -2.41
PDX1P52945 MIR6129-201ENST00000616087 109 ntBASIC-0.01□□□□□ -2.41
PDX1P52945 RNA5SP205-201ENST00000364653 136 ntBASIC-0.02□□□□□ -2.41
PDX1P52945 SNORD101-201ENST00000384027 73 ntBASIC-0.02□□□□□ -2.41
PDX1P52945 RNU6-1168P-201ENST00000390831 104 ntBASIC-0.02□□□□□ -2.41
PDX1P52945 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.02□□□□□ -2.41
PDX1P52945 SNORA25.13-201ENST00000516395 103 ntBASIC-0.02□□□□□ -2.41
PDX1P52945 RNU6-412P-201ENST00000516434 106 ntBASIC-0.02□□□□□ -2.41
PDX1P52945 MIR4696-201ENST00000581431 70 ntBASIC-0.02□□□□□ -2.41
PDX1P52945 AC012531.4-201ENST00000616509 177 ntBASIC-0.02□□□□□ -2.41
PDX1P52945 AC069503.3-201ENST00000618674 145 ntBASIC-0.02□□□□□ -2.41
PDX1P52945 RNU6-756P-201ENST00000383997 107 ntBASIC-0.03□□□□□ -2.41
PDX1P52945 AL603908.1-201ENST00000406098 201 ntBASIC-0.03□□□□□ -2.41
PDX1P52945 RNU6-1064P-201ENST00000410626 104 ntBASIC-0.03□□□□□ -2.41
PDX1P52945 SCARNA11.2-201ENST00000517183 154 ntBASIC-0.03□□□□□ -2.41
PDX1P52945 MIR4777-201ENST00000583710 86 ntBASIC-0.03□□□□□ -2.41
PDX1P52945 MIR4439-201ENST00000583746 80 ntBASIC-0.03□□□□□ -2.41
PDX1P52945 AC103810.7-201ENST00000607821 91 ntBASIC-0.03□□□□□ -2.41
PDX1P52945 AC132825.6-201ENST00000638861 357 ntBASIC-0.03□□□□□ -2.41
PDX1P52945 RNU6-664P-201ENST00000362381 107 ntBASIC-0.04□□□□□ -2.42
PDX1P52945 RNU4-36P-201ENST00000364294 144 ntBASIC-0.04□□□□□ -2.42
PDX1P52945 RNU6-652P-201ENST00000365488 107 ntBASIC-0.04□□□□□ -2.42
PDX1P52945 RNU6-1117P-201ENST00000384525 104 ntBASIC-0.04□□□□□ -2.42
PDX1P52945 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-0.04□□□□□ -2.42
PDX1P52945 RNU7-85P-201ENST00000458851 63 ntBASIC-0.04□□□□□ -2.42
PDX1P52945 RNU6-904P-201ENST00000516206 101 ntBASIC-0.04□□□□□ -2.42
PDX1P52945 MIR4460-201ENST00000577862 86 ntBASIC-0.04□□□□□ -2.42
PDX1P52945 YWHAEP2-201ENST00000580066 112 ntBASIC-0.04□□□□□ -2.42
PDX1P52945 RNU6-813P-201ENST00000384691 107 ntBASIC-0.05□□□□□ -2.42
PDX1P52945 Y_RNA.601-201ENST00000410500 113 ntBASIC-0.05□□□□□ -2.42
PDX1P52945 MIR548AE1-201ENST00000583292 70 ntBASIC-0.05□□□□□ -2.42
PDX1P52945 Y_RNA.10-201ENST00000362371 110 ntBASIC-0.06□□□□□ -2.42
PDX1P52945 MIR516B1-201ENST00000385211 90 ntBASIC-0.06□□□□□ -2.42
PDX1P52945 MT-TY-201ENST00000387409 66 ntBASIC-0.06□□□□□ -2.42
PDX1P52945 MIR876-201ENST00000401147 81 ntBASIC-0.06□□□□□ -2.42
PDX1P52945 RNA5SP163-201ENST00000410304 99 ntBASIC-0.06□□□□□ -2.42
PDX1P52945 RNU6-935P-201ENST00000410371 100 ntBASIC-0.06□□□□□ -2.42
PDX1P52945 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.06□□□□□ -2.42
PDX1P52945 RNU5B-6P-201ENST00000516765 68 ntBASIC-0.06□□□□□ -2.42
PDX1P52945 MIR4743-201ENST00000584576 69 ntBASIC-0.06□□□□□ -2.42
PDX1P52945 RNU6-929P-201ENST00000384429 107 ntBASIC-0.07□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 175.5 ms