Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RNA5SP47-201ENST00000517230 109 ntBASIC0.66□□□□□ -2.3
LMX1BO60663 MIR4653-201ENST00000585107 83 ntBASIC0.66□□□□□ -2.3
LMX1BO60663 AC006254.2-201ENST00000603259 279 ntBASIC0.66□□□□□ -2.3
LMX1BO60663 AL590095.2-201ENST00000604136 117 ntBASIC0.66□□□□□ -2.3
LMX1BO60663 MIR6866-201ENST00000638146 69 ntBASIC0.66□□□□□ -2.3
LMX1BO60663 RNU6-633P-201ENST00000362612 103 ntBASIC0.65□□□□□ -2.31
LMX1BO60663 SNORA36.1-201ENST00000363424 132 ntBASIC0.65□□□□□ -2.31
LMX1BO60663 SNORD115-24-201ENST00000363528 82 ntBASIC0.65□□□□□ -2.31
LMX1BO60663 SNORD116-22-201ENST00000384430 92 ntBASIC0.65□□□□□ -2.31
LMX1BO60663 MIR1273G-201ENST00000577677 100 ntBASIC0.65□□□□□ -2.31
LMX1BO60663 AC062037.1-201ENST00000605302 128 ntBASIC0.65□□□□□ -2.31
LMX1BO60663 RNU6-1134P-201ENST00000365156 101 ntBASIC0.64□□□□□ -2.31
LMX1BO60663 Y_RNA.558-201ENST00000384685 113 ntBASIC0.64□□□□□ -2.31
LMX1BO60663 MIR508-201ENST00000384857 115 ntBASIC0.64□□□□□ -2.31
LMX1BO60663 RNU6-519P-201ENST00000410590 108 ntBASIC0.64□□□□□ -2.31
LMX1BO60663 MIR4696-201ENST00000581431 70 ntBASIC0.64□□□□□ -2.31
LMX1BO60663 MIR4639-201ENST00000584938 69 ntBASIC0.64□□□□□ -2.31
LMX1BO60663 AC244669.1-204ENST00000621564 178 ntBASIC0.64□□□□□ -2.31
LMX1BO60663 MIR6828-201ENST00000636181 60 ntBASIC0.64□□□□□ -2.31
LMX1BO60663 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.63□□□□□ -2.31
LMX1BO60663 RNU6-509P-201ENST00000363519 107 ntBASIC0.63□□□□□ -2.31
LMX1BO60663 SNORD114-23-201ENST00000363536 72 ntBASIC0.63□□□□□ -2.31
LMX1BO60663 Y_RNA.374-201ENST00000365606 101 ntBASIC0.63□□□□□ -2.31
LMX1BO60663 RNA5SP292-201ENST00000390974 118 ntBASIC0.63□□□□□ -2.31
LMX1BO60663 RNU6-466P-201ENST00000391224 103 ntBASIC0.63□□□□□ -2.31
LMX1BO60663 MIR936-201ENST00000401264 98 ntBASIC0.63□□□□□ -2.31
LMX1BO60663 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.63□□□□□ -2.31
LMX1BO60663 MIR548AG2-201ENST00000581228 64 ntBASIC0.63□□□□□ -2.31
LMX1BO60663 MIR3920-201ENST00000581751 86 ntBASIC0.63□□□□□ -2.31
LMX1BO60663 MIR4536-1-201ENST00000583537 88 ntBASIC0.63□□□□□ -2.31
LMX1BO60663 Y_RNA.388-201ENST00000383919 113 ntBASIC0.62□□□□□ -2.31
LMX1BO60663 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.62□□□□□ -2.31
LMX1BO60663 RNU7-153P-201ENST00000516455 62 ntBASIC0.62□□□□□ -2.31
LMX1BO60663 snoMBII-202.2-201ENST00000517263 86 ntBASIC0.62□□□□□ -2.31
LMX1BO60663 MIR3064-201ENST00000581130 66 ntBASIC0.62□□□□□ -2.31
LMX1BO60663 MIRLET7F1-201ENST00000362202 87 ntBASIC0.61□□□□□ -2.31
LMX1BO60663 Y_RNA.73-201ENST00000362910 113 ntBASIC0.61□□□□□ -2.31
LMX1BO60663 RNU6-726P-201ENST00000364680 107 ntBASIC0.61□□□□□ -2.31
LMX1BO60663 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC0.61□□□□□ -2.31
LMX1BO60663 SNORD90-201ENST00000391145 111 ntBASIC0.61□□□□□ -2.31
LMX1BO60663 RNA5SP222-201ENST00000411039 105 ntBASIC0.61□□□□□ -2.31
LMX1BO60663 RNU6-135P-201ENST00000516769 101 ntBASIC0.61□□□□□ -2.31
LMX1BO60663 RNA5SP94-201ENST00000516917 108 ntBASIC0.61□□□□□ -2.31
LMX1BO60663 AC010487.4-201ENST00000637027 61 ntBASIC0.61□□□□□ -2.31
LMX1BO60663 RNU6-664P-201ENST00000362381 107 ntBASIC0.6□□□□□ -2.31
LMX1BO60663 Y_RNA.207-201ENST00000364142 106 ntBASIC0.6□□□□□ -2.31
LMX1BO60663 RNU6-1152P-201ENST00000384576 107 ntBASIC0.6□□□□□ -2.31
LMX1BO60663 MIR450A2-201ENST00000385022 100 ntBASIC0.6□□□□□ -2.31
LMX1BO60663 SNORD41.1-201ENST00000391000 69 ntBASIC0.6□□□□□ -2.31
LMX1BO60663 RNY4P29-201ENST00000410801 97 ntBASIC0.6□□□□□ -2.31
LMX1BO60663 RNU6-287P-201ENST00000516230 98 ntBASIC0.6□□□□□ -2.31
LMX1BO60663 RNU6-65P-201ENST00000516332 98 ntBASIC0.6□□□□□ -2.31
LMX1BO60663 SCARNA16.5-201ENST00000517114 183 ntBASIC0.6□□□□□ -2.31
LMX1BO60663 MIR548BB-201ENST00000626714 66 ntBASIC0.6□□□□□ -2.31
LMX1BO60663 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.6□□□□□ -2.31
LMX1BO60663 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.6□□□□□ -2.31
LMX1BO60663 MIR494-201ENST00000349529 81 ntBASIC0.59□□□□□ -2.31
LMX1BO60663 RNA5SP347-201ENST00000362445 119 ntBASIC0.59□□□□□ -2.31
LMX1BO60663 RNU4-32P-201ENST00000363404 141 ntBASIC0.59□□□□□ -2.31
LMX1BO60663 RNU4-45P-201ENST00000365469 141 ntBASIC0.59□□□□□ -2.31
LMX1BO60663 RNU6-979P-201ENST00000383896 107 ntBASIC0.59□□□□□ -2.31
LMX1BO60663 Y_RNA.596-201ENST00000410462 109 ntBASIC0.59□□□□□ -2.31
LMX1BO60663 RNU6-592P-201ENST00000411333 103 ntBASIC0.59□□□□□ -2.31
LMX1BO60663 RNU7-104P-201ENST00000459398 79 ntBASIC0.59□□□□□ -2.31
LMX1BO60663 PSMC1P5-201ENST00000512850 177 ntBASIC0.59□□□□□ -2.31
LMX1BO60663 RN7SKP12-201ENST00000516275 143 ntBASIC0.59□□□□□ -2.31
LMX1BO60663 SNORA18.5-201ENST00000516616 101 ntBASIC0.59□□□□□ -2.31
LMX1BO60663 AC104996.3-201ENST00000590718 94 ntBASIC0.59□□□□□ -2.31
LMX1BO60663 RNU6-1126P-201ENST00000384002 107 ntBASIC0.58□□□□□ -2.32
LMX1BO60663 SNORD101-201ENST00000384027 73 ntBASIC0.58□□□□□ -2.32
LMX1BO60663 RNU6-811P-201ENST00000384069 107 ntBASIC0.58□□□□□ -2.32
LMX1BO60663 RNU6-469P-201ENST00000516253 101 ntBASIC0.58□□□□□ -2.32
LMX1BO60663 AC006160.2-201ENST00000637708 154 ntBASIC0.58□□□□□ -2.32
LMX1BO60663 MIR924-201ENST00000638017 53 ntBASIC0.58□□□□□ -2.32
LMX1BO60663 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.58□□□□□ -2.32
LMX1BO60663 Y_RNA.30-201ENST00000362572 97 ntBASIC0.57□□□□□ -2.32
LMX1BO60663 RNA5SP457-201ENST00000363657 124 ntBASIC0.57□□□□□ -2.32
LMX1BO60663 RNY1P1-201ENST00000364372 112 ntBASIC0.57□□□□□ -2.32
LMX1BO60663 RNA5SP517-201ENST00000364724 117 ntBASIC0.57□□□□□ -2.32
LMX1BO60663 RNU6-820P-201ENST00000384273 107 ntBASIC0.57□□□□□ -2.32
LMX1BO60663 MIR519C-201ENST00000385053 87 ntBASIC0.57□□□□□ -2.32
LMX1BO60663 MIR1302-4-201ENST00000408701 150 ntBASIC0.57□□□□□ -2.32
LMX1BO60663 RNU7-13P-201ENST00000516413 62 ntBASIC0.57□□□□□ -2.32
LMX1BO60663 MIR5588-201ENST00000581890 63 ntBASIC0.57□□□□□ -2.32
LMX1BO60663 AC067863.3-201ENST00000624172 122 ntBASIC0.57□□□□□ -2.32
LMX1BO60663 MIR140-201ENST00000385282 100 ntBASIC0.56□□□□□ -2.32
LMX1BO60663 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
LMX1BO60663 MIR1236-201ENST00000408340 102 ntBASIC0.56□□□□□ -2.32
LMX1BO60663 MIR2113-201ENST00000459007 91 ntBASIC0.56□□□□□ -2.32
LMX1BO60663 AC022137.1-201ENST00000483735 151 ntBASIC0.56□□□□□ -2.32
LMX1BO60663 MIR7107-201ENST00000611489 80 ntBASIC0.56□□□□□ -2.32
LMX1BO60663 IGLL4P-201ENST00000614590 133 ntBASIC0.56□□□□□ -2.32
LMX1BO60663 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
LMX1BO60663 RNU6-1229P-201ENST00000364295 107 ntBASIC0.55□□□□□ -2.32
LMX1BO60663 SNORD115-44-201ENST00000365391 82 ntBASIC0.55□□□□□ -2.32
LMX1BO60663 RNU6-716P-201ENST00000365621 103 ntBASIC0.55□□□□□ -2.32
LMX1BO60663 RNU6-787P-201ENST00000384032 107 ntBASIC0.55□□□□□ -2.32
LMX1BO60663 SNORA8.2-201ENST00000384372 139 ntBASIC0.55□□□□□ -2.32
LMX1BO60663 Y_RNA.491-201ENST00000384417 107 ntBASIC0.55□□□□□ -2.32
LMX1BO60663 RNU6-110P-201ENST00000384508 104 ntBASIC0.55□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms