Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 Y_RNA.343-201ENST00000365354 112 ntBASIC-0.08□□□□□ -2.42
CPSF3Q9UKF6 RNY1P5-201ENST00000383890 115 ntBASIC-0.08□□□□□ -2.42
CPSF3Q9UKF6 RNU6-409P-201ENST00000384114 104 ntBASIC-0.08□□□□□ -2.42
CPSF3Q9UKF6 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.08□□□□□ -2.42
CPSF3Q9UKF6 SNORD110-201ENST00000408189 75 ntBASIC-0.08□□□□□ -2.42
CPSF3Q9UKF6 HMGN2P22-201ENST00000427588 175 ntBASIC-0.08□□□□□ -2.42
CPSF3Q9UKF6 SPINT5P-201ENST00000448174 155 ntBASIC-0.08□□□□□ -2.42
CPSF3Q9UKF6 RNU6-1018P-201ENST00000516577 106 ntBASIC-0.08□□□□□ -2.42
CPSF3Q9UKF6 AC141557.1-201ENST00000540982 400 ntBASIC-0.08□□□□□ -2.42
CPSF3Q9UKF6 MIR4743-201ENST00000584576 69 ntBASIC-0.08□□□□□ -2.42
CPSF3Q9UKF6 RNU6-652P-201ENST00000365488 107 ntBASIC-0.09□□□□□ -2.42
CPSF3Q9UKF6 Y_RNA.507-201ENST00000384500 99 ntBASIC-0.09□□□□□ -2.42
CPSF3Q9UKF6 RNU6-1254P-201ENST00000391266 104 ntBASIC-0.09□□□□□ -2.42
CPSF3Q9UKF6 MIR548G-201ENST00000408442 89 ntBASIC-0.09□□□□□ -2.42
CPSF3Q9UKF6 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC-0.09□□□□□ -2.42
CPSF3Q9UKF6 MIR3925-201ENST00000584674 77 ntBASIC-0.09□□□□□ -2.42
CPSF3Q9UKF6 AL109933.3-201ENST00000619095 188 ntBASIC-0.09□□□□□ -2.42
CPSF3Q9UKF6 Y_RNA.57-201ENST00000362806 113 ntBASIC-0.1□□□□□ -2.43
CPSF3Q9UKF6 Y_RNA.173-201ENST00000363776 113 ntBASIC-0.1□□□□□ -2.43
CPSF3Q9UKF6 RNU6-1201P-201ENST00000384227 107 ntBASIC-0.1□□□□□ -2.43
CPSF3Q9UKF6 RNU6-816P-201ENST00000390914 107 ntBASIC-0.1□□□□□ -2.43
CPSF3Q9UKF6 RNU6-1268P-201ENST00000391214 107 ntBASIC-0.1□□□□□ -2.43
CPSF3Q9UKF6 RNU6-1239P-201ENST00000391310 107 ntBASIC-0.1□□□□□ -2.43
CPSF3Q9UKF6 MIR892B-201ENST00000401279 77 ntBASIC-0.1□□□□□ -2.43
CPSF3Q9UKF6 RNU7-74P-201ENST00000459104 62 ntBASIC-0.1□□□□□ -2.43
CPSF3Q9UKF6 RNU6-90P-201ENST00000606352 106 ntBASIC-0.1□□□□□ -2.43
CPSF3Q9UKF6 SNORD36A-201ENST00000362874 73 ntBASIC-0.11□□□□□ -2.43
CPSF3Q9UKF6 Y_RNA.125-201ENST00000363371 111 ntBASIC-0.11□□□□□ -2.43
CPSF3Q9UKF6 RNU6-1211P-201ENST00000459179 105 ntBASIC-0.11□□□□□ -2.43
CPSF3Q9UKF6 MIR3671-201ENST00000580455 88 ntBASIC-0.11□□□□□ -2.43
CPSF3Q9UKF6 AL162726.3-218ENST00000636401 95 ntBASIC-0.11□□□□□ -2.43
CPSF3Q9UKF6 Y_RNA.346-201ENST00000365385 112 ntBASIC-0.12□□□□□ -2.43
CPSF3Q9UKF6 SNORD115-44-201ENST00000365391 82 ntBASIC-0.12□□□□□ -2.43
CPSF3Q9UKF6 RNU6-756P-201ENST00000383997 107 ntBASIC-0.12□□□□□ -2.43
CPSF3Q9UKF6 MIR519E-201ENST00000385075 84 ntBASIC-0.12□□□□□ -2.43
CPSF3Q9UKF6 RNU6-243P-201ENST00000391140 107 ntBASIC-0.12□□□□□ -2.43
CPSF3Q9UKF6 AL161932.1-201ENST00000437408 146 ntBASIC-0.12□□□□□ -2.43
CPSF3Q9UKF6 RNU7-107P-201ENST00000459121 61 ntBASIC-0.12□□□□□ -2.43
CPSF3Q9UKF6 AL442128.1-201ENST00000615151 90 ntBASIC-0.12□□□□□ -2.43
CPSF3Q9UKF6 TRDV1-202ENST00000621643 102 ntBASIC-0.12□□□□□ -2.43
CPSF3Q9UKF6 RNU6-1163P-201ENST00000364516 107 ntBASIC-0.13□□□□□ -2.43
CPSF3Q9UKF6 RNU1-141P-201ENST00000364623 158 ntBASIC-0.13□□□□□ -2.43
CPSF3Q9UKF6 Y_RNA.525-201ENST00000384570 113 ntBASIC-0.13□□□□□ -2.43
CPSF3Q9UKF6 MIR617-201ENST00000385030 97 ntBASIC-0.13□□□□□ -2.43
CPSF3Q9UKF6 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC-0.13□□□□□ -2.43
CPSF3Q9UKF6 RNU6-971P-201ENST00000516920 106 ntBASIC-0.13□□□□□ -2.43
CPSF3Q9UKF6 AL157777.2-201ENST00000258070 137 ntBASIC-0.14□□□□□ -2.43
CPSF3Q9UKF6 Y_RNA.586-201ENST00000391146 98 ntBASIC-0.14□□□□□ -2.43
CPSF3Q9UKF6 SCARNA11.2-201ENST00000517183 154 ntBASIC-0.14□□□□□ -2.43
CPSF3Q9UKF6 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-0.14□□□□□ -2.43
CPSF3Q9UKF6 AL035470.1-201ENST00000622571 220 ntBASIC-0.14□□□□□ -2.43
CPSF3Q9UKF6 MIR539-201ENST00000365690 78 ntBASIC-0.15□□□□□ -2.43
CPSF3Q9UKF6 RNU6-929P-201ENST00000384429 107 ntBASIC-0.15□□□□□ -2.43
CPSF3Q9UKF6 RNA5SP163-201ENST00000410304 99 ntBASIC-0.15□□□□□ -2.43
CPSF3Q9UKF6 MIR1912-201ENST00000410389 80 ntBASIC-0.15□□□□□ -2.43
CPSF3Q9UKF6 AC093423.1-201ENST00000440817 142 ntBASIC-0.15□□□□□ -2.43
CPSF3Q9UKF6 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-0.15□□□□□ -2.43
CPSF3Q9UKF6 MIR2113-201ENST00000459007 91 ntBASIC-0.15□□□□□ -2.43
CPSF3Q9UKF6 SNORA25.13-201ENST00000516395 103 ntBASIC-0.15□□□□□ -2.43
CPSF3Q9UKF6 U6.100-201ENST00000636230 99 ntBASIC-0.15□□□□□ -2.43
CPSF3Q9UKF6 MIR548I1-201ENST00000408810 149 ntBASIC-0.16□□□□□ -2.44
CPSF3Q9UKF6 RNU7-165P-201ENST00000458864 60 ntBASIC-0.16□□□□□ -2.44
CPSF3Q9UKF6 RNU7-159P-201ENST00000459284 62 ntBASIC-0.16□□□□□ -2.44
CPSF3Q9UKF6 RNU6-957P-201ENST00000363652 99 ntBASIC-0.17□□□□□ -2.44
CPSF3Q9UKF6 Y_RNA.377-201ENST00000365644 108 ntBASIC-0.17□□□□□ -2.44
CPSF3Q9UKF6 SNORA51.5-201ENST00000384126 131 ntBASIC-0.17□□□□□ -2.44
CPSF3Q9UKF6 SNORA75.1-201ENST00000391130 148 ntBASIC-0.17□□□□□ -2.44
CPSF3Q9UKF6 RNU6-287P-201ENST00000516230 98 ntBASIC-0.17□□□□□ -2.44
CPSF3Q9UKF6 RNU6-209P-201ENST00000384118 107 ntBASIC-0.18□□□□□ -2.44
CPSF3Q9UKF6 MIR577-201ENST00000385196 96 ntBASIC-0.18□□□□□ -2.44
CPSF3Q9UKF6 RNU6-907P-201ENST00000390924 102 ntBASIC-0.18□□□□□ -2.44
CPSF3Q9UKF6 MIR876-201ENST00000401147 81 ntBASIC-0.18□□□□□ -2.44
CPSF3Q9UKF6 RNU6-180P-201ENST00000516697 61 ntBASIC-0.18□□□□□ -2.44
CPSF3Q9UKF6 MIR4679-2-201ENST00000578358 77 ntBASIC-0.18□□□□□ -2.44
CPSF3Q9UKF6 AC069503.3-201ENST00000618674 145 ntBASIC-0.18□□□□□ -2.44
CPSF3Q9UKF6 Y_RNA.78-201ENST00000362970 110 ntBASIC-0.19□□□□□ -2.44
CPSF3Q9UKF6 RNU6-302P-201ENST00000365249 107 ntBASIC-0.19□□□□□ -2.44
CPSF3Q9UKF6 RNU6V-201ENST00000384105 107 ntBASIC-0.19□□□□□ -2.44
CPSF3Q9UKF6 Y_RNA.596-201ENST00000410462 109 ntBASIC-0.19□□□□□ -2.44
CPSF3Q9UKF6 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.19□□□□□ -2.44
CPSF3Q9UKF6 AC007012.1-201ENST00000567192 175 ntBASIC-0.19□□□□□ -2.44
CPSF3Q9UKF6 MIR4473-201ENST00000583731 91 ntBASIC-0.19□□□□□ -2.44
CPSF3Q9UKF6 MTRNR2L2-201ENST00000604882 87 ntBASIC-0.19□□□□□ -2.44
CPSF3Q9UKF6 AC084368.1-201ENST00000620935 65 ntBASIC-0.19□□□□□ -2.44
CPSF3Q9UKF6 MIR1295B-201ENST00000636144 60 ntBASIC-0.19□□□□□ -2.44
CPSF3Q9UKF6 MIR3914-2-201ENST00000637339 95 ntBASIC-0.19□□□□□ -2.44
CPSF3Q9UKF6 Y_RNA.309-201ENST00000365046 111 ntBASIC-0.2□□□□□ -2.44
CPSF3Q9UKF6 Y_RNA.549-201ENST00000384657 102 ntBASIC-0.2□□□□□ -2.44
CPSF3Q9UKF6 MIR516B1-201ENST00000385211 90 ntBASIC-0.2□□□□□ -2.44
CPSF3Q9UKF6 Y_RNA.712-201ENST00000517011 92 ntBASIC-0.2□□□□□ -2.44
CPSF3Q9UKF6 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.2□□□□□ -2.44
CPSF3Q9UKF6 Y_RNA.207-201ENST00000364142 106 ntBASIC-0.21□□□□□ -2.44
CPSF3Q9UKF6 Y_RNA.218-201ENST00000364218 104 ntBASIC-0.21□□□□□ -2.44
CPSF3Q9UKF6 RNU6-80P-201ENST00000384195 107 ntBASIC-0.21□□□□□ -2.44
CPSF3Q9UKF6 Y_RNA.649-201ENST00000459077 103 ntBASIC-0.21□□□□□ -2.44
CPSF3Q9UKF6 AC104692.1-201ENST00000472406 90 ntBASIC-0.21□□□□□ -2.44
CPSF3Q9UKF6 SNORD33.1-201ENST00000516213 88 ntBASIC-0.21□□□□□ -2.44
CPSF3Q9UKF6 MIR4694-201ENST00000578534 80 ntBASIC-0.21□□□□□ -2.44
CPSF3Q9UKF6 YWHAEP2-201ENST00000580066 112 ntBASIC-0.21□□□□□ -2.44
CPSF3Q9UKF6 MIR3668-201ENST00000582138 75 ntBASIC-0.21□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 233.9 ms