Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.01□□□□□ -2.09
LIMD1Q9UGP4 RNU6-369P-201ENST00000362515 102 ntBASIC2.01□□□□□ -2.09
LIMD1Q9UGP4 MIR8081-201ENST00000611533 95 ntBASIC2.01□□□□□ -2.09
LIMD1Q9UGP4 DLEU2_3.1-201ENST00000620005 73 ntBASIC2.01□□□□□ -2.09
LIMD1Q9UGP4 SNORD115-44-201ENST00000365391 82 ntBASIC2□□□□□ -2.09
LIMD1Q9UGP4 RNU6-411P-201ENST00000384451 107 ntBASIC2□□□□□ -2.09
LIMD1Q9UGP4 TRMT112P2-201ENST00000512910 132 ntBASIC2□□□□□ -2.09
LIMD1Q9UGP4 RNU6-1057P-201ENST00000517162 102 ntBASIC2□□□□□ -2.09
LIMD1Q9UGP4 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC2□□□□□ -2.09
LIMD1Q9UGP4 MIR8070-201ENST00000616510 88 ntBASIC2□□□□□ -2.09
LIMD1Q9UGP4 RNU4-52P-201ENST00000384209 138 ntBASIC1.99□□□□□ -2.09
LIMD1Q9UGP4 MIR499A-201ENST00000384903 122 ntBASIC1.99□□□□□ -2.09
LIMD1Q9UGP4 MIR222-201ENST00000384992 110 ntBASIC1.99□□□□□ -2.09
LIMD1Q9UGP4 MIR1827-201ENST00000408549 66 ntBASIC1.99□□□□□ -2.09
LIMD1Q9UGP4 RNU4-62P-201ENST00000410125 130 ntBASIC1.99□□□□□ -2.09
LIMD1Q9UGP4 AP1B1P2-201ENST00000416196 106 ntBASIC1.99□□□□□ -2.09
LIMD1Q9UGP4 Y_RNA.681-201ENST00000516445 113 ntBASIC1.99□□□□□ -2.09
LIMD1Q9UGP4 Y_RNA.12-201ENST00000362393 112 ntBASIC1.98□□□□□ -2.09
LIMD1Q9UGP4 MIR520F-201ENST00000384824 87 ntBASIC1.98□□□□□ -2.09
LIMD1Q9UGP4 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.98□□□□□ -2.09
LIMD1Q9UGP4 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.98□□□□□ -2.09
LIMD1Q9UGP4 AC139453.2-201ENST00000487255 133 ntBASIC1.98□□□□□ -2.09
LIMD1Q9UGP4 RNU6-681P-201ENST00000364012 104 ntBASIC1.97□□□□□ -2.09
LIMD1Q9UGP4 Y_RNA.207-201ENST00000364142 106 ntBASIC1.97□□□□□ -2.09
LIMD1Q9UGP4 RNA5SP245-201ENST00000364239 121 ntBASIC1.97□□□□□ -2.09
LIMD1Q9UGP4 SCARNA18B-201ENST00000458806 135 ntBASIC1.97□□□□□ -2.09
LIMD1Q9UGP4 RNA5SP364-201ENST00000516938 78 ntBASIC1.97□□□□□ -2.09
LIMD1Q9UGP4 AL136317.1-201ENST00000612653 226 ntBASIC1.97□□□□□ -2.09
LIMD1Q9UGP4 AC084768.2-201ENST00000622736 221 ntBASIC1.97□□□□□ -2.09
LIMD1Q9UGP4 RNU6-871P-201ENST00000516122 100 ntBASIC1.96□□□□□ -2.1
LIMD1Q9UGP4 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.96□□□□□ -2.1
LIMD1Q9UGP4 MIR4285-201ENST00000581001 85 ntBASIC1.96□□□□□ -2.1
LIMD1Q9UGP4 SNORD90-201ENST00000391145 111 ntBASIC1.95□□□□□ -2.1
LIMD1Q9UGP4 AC074348.1-201ENST00000426503 132 ntBASIC1.95□□□□□ -2.1
LIMD1Q9UGP4 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.94□□□□□ -2.1
LIMD1Q9UGP4 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
LIMD1Q9UGP4 U3.27-201ENST00000391237 200 ntBASIC1.94□□□□□ -2.1
LIMD1Q9UGP4 AL157834.3-201ENST00000615543 103 ntBASIC1.94□□□□□ -2.1
LIMD1Q9UGP4 Y_RNA.788-201ENST00000622394 112 ntBASIC1.94□□□□□ -2.1
LIMD1Q9UGP4 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.94□□□□□ -2.1
LIMD1Q9UGP4 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.94□□□□□ -2.1
LIMD1Q9UGP4 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
LIMD1Q9UGP4 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
LIMD1Q9UGP4 MIR451A-201ENST00000385059 72 ntBASIC1.93□□□□□ -2.1
LIMD1Q9UGP4 MIR9-3-201ENST00000385084 90 ntBASIC1.93□□□□□ -2.1
LIMD1Q9UGP4 RNU2-59P-201ENST00000410482 191 ntBASIC1.93□□□□□ -2.1
LIMD1Q9UGP4 MIR3134-201ENST00000579433 74 ntBASIC1.93□□□□□ -2.1
LIMD1Q9UGP4 MIR4303-201ENST00000581299 66 ntBASIC1.93□□□□□ -2.1
LIMD1Q9UGP4 uc_338.16-201ENST00000621804 95 ntBASIC1.93□□□□□ -2.1
LIMD1Q9UGP4 SNORA25-201ENST00000384384 134 ntBASIC1.92□□□□□ -2.1
LIMD1Q9UGP4 Y_RNA.532-201ENST00000384590 113 ntBASIC1.92□□□□□ -2.1
LIMD1Q9UGP4 AC002429.1-201ENST00000437672 148 ntBASIC1.92□□□□□ -2.1
LIMD1Q9UGP4 snoU13.17-201ENST00000458802 104 ntBASIC1.92□□□□□ -2.1
LIMD1Q9UGP4 AC097510.1-201ENST00000510945 133 ntBASIC1.92□□□□□ -2.1
LIMD1Q9UGP4 RNU7-13P-201ENST00000516413 62 ntBASIC1.92□□□□□ -2.1
LIMD1Q9UGP4 RNU6-135P-201ENST00000516769 101 ntBASIC1.92□□□□□ -2.1
LIMD1Q9UGP4 MIR4484-201ENST00000582855 83 ntBASIC1.92□□□□□ -2.1
LIMD1Q9UGP4 Evf-2_5p.1-201ENST00000614213 142 ntBASIC1.92□□□□□ -2.1
LIMD1Q9UGP4 RMST_2.1-201ENST00000617263 136 ntBASIC1.92□□□□□ -2.1
LIMD1Q9UGP4 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
LIMD1Q9UGP4 RNU6-70P-201ENST00000516438 60 ntBASIC1.91□□□□□ -2.1
LIMD1Q9UGP4 SNORA31.14-201ENST00000516728 116 ntBASIC1.91□□□□□ -2.1
LIMD1Q9UGP4 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.91□□□□□ -2.1
LIMD1Q9UGP4 Y_RNA.32-201ENST00000362589 110 ntBASIC1.9□□□□□ -2.11
LIMD1Q9UGP4 MIR216B-201ENST00000390186 82 ntBASIC1.9□□□□□ -2.11
LIMD1Q9UGP4 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
LIMD1Q9UGP4 RNU6-788P-201ENST00000390967 104 ntBASIC1.9□□□□□ -2.11
LIMD1Q9UGP4 SNORA67.5-201ENST00000391036 107 ntBASIC1.9□□□□□ -2.11
LIMD1Q9UGP4 HMGN2P38-201ENST00000423806 265 ntBASIC1.9□□□□□ -2.11
LIMD1Q9UGP4 FABP5P4-201ENST00000437203 171 ntBASIC1.9□□□□□ -2.11
LIMD1Q9UGP4 AC004223.1-201ENST00000479840 271 ntBASIC1.9□□□□□ -2.11
LIMD1Q9UGP4 RNU6-1110P-201ENST00000516462 101 ntBASIC1.9□□□□□ -2.11
LIMD1Q9UGP4 RNU6-340P-201ENST00000364005 107 ntBASIC1.89□□□□□ -2.11
LIMD1Q9UGP4 SUMO2P12-201ENST00000405924 140 ntBASIC1.89□□□□□ -2.11
LIMD1Q9UGP4 Y_RNA.606-201ENST00000410579 103 ntBASIC1.89□□□□□ -2.11
LIMD1Q9UGP4 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.89□□□□□ -2.11
LIMD1Q9UGP4 RNU6-523P-201ENST00000516304 54 ntBASIC1.89□□□□□ -2.11
LIMD1Q9UGP4 BX248123.2-201ENST00000606318 124 ntBASIC1.89□□□□□ -2.11
LIMD1Q9UGP4 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
LIMD1Q9UGP4 Y_RNA.36-201ENST00000362602 112 ntBASIC1.88□□□□□ -2.11
LIMD1Q9UGP4 SNORD115-24-201ENST00000363528 82 ntBASIC1.88□□□□□ -2.11
LIMD1Q9UGP4 MIR489-201ENST00000384923 84 ntBASIC1.88□□□□□ -2.11
LIMD1Q9UGP4 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
LIMD1Q9UGP4 AC114801.3-201ENST00000510231 177 ntBASIC1.88□□□□□ -2.11
LIMD1Q9UGP4 RNU6-287P-201ENST00000516230 98 ntBASIC1.88□□□□□ -2.11
LIMD1Q9UGP4 MIR3140-201ENST00000583685 90 ntBASIC1.88□□□□□ -2.11
LIMD1Q9UGP4 MIR4448-201ENST00000584360 86 ntBASIC1.88□□□□□ -2.11
LIMD1Q9UGP4 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.87□□□□□ -2.11
LIMD1Q9UGP4 Y_RNA.371-201ENST00000365591 113 ntBASIC1.87□□□□□ -2.11
LIMD1Q9UGP4 MIR942-201ENST00000401111 86 ntBASIC1.87□□□□□ -2.11
LIMD1Q9UGP4 uc_338.20-201ENST00000621563 178 ntBASIC1.87□□□□□ -2.11
LIMD1Q9UGP4 RNA5SP403-201ENST00000363598 108 ntBASIC1.86□□□□□ -2.11
LIMD1Q9UGP4 RNA5SP117-201ENST00000365294 118 ntBASIC1.86□□□□□ -2.11
LIMD1Q9UGP4 SNORA24B-201ENST00000384176 131 ntBASIC1.86□□□□□ -2.11
LIMD1Q9UGP4 MIR502-201ENST00000606349 86 ntBASIC1.86□□□□□ -2.11
LIMD1Q9UGP4 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.86□□□□□ -2.11
LIMD1Q9UGP4 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
LIMD1Q9UGP4 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
LIMD1Q9UGP4 SNORA8.1-201ENST00000384250 140 ntBASIC1.85□□□□□ -2.11
LIMD1Q9UGP4 RNU7-95P-201ENST00000459222 64 ntBASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 261.4 ms