Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MIR106A-201ENST00000384870 81 ntBASIC-0.24□□□□□ -2.45
LHX3Q9UBR4 SNORA75.1-201ENST00000391130 148 ntBASIC-0.24□□□□□ -2.45
LHX3Q9UBR4 RNA5SP136-201ENST00000410906 107 ntBASIC-0.24□□□□□ -2.45
LHX3Q9UBR4 RNU6-781P-201ENST00000516377 101 ntBASIC-0.24□□□□□ -2.45
LHX3Q9UBR4 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.24□□□□□ -2.45
LHX3Q9UBR4 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-0.24□□□□□ -2.45
LHX3Q9UBR4 Y_RNA.528-201ENST00000384575 108 ntBASIC-0.25□□□□□ -2.45
LHX3Q9UBR4 MIR516B1-201ENST00000385211 90 ntBASIC-0.25□□□□□ -2.45
LHX3Q9UBR4 SPINT5P-201ENST00000448174 155 ntBASIC-0.25□□□□□ -2.45
LHX3Q9UBR4 RNA5SP272-201ENST00000516095 111 ntBASIC-0.25□□□□□ -2.45
LHX3Q9UBR4 RNU6-180P-201ENST00000516697 61 ntBASIC-0.25□□□□□ -2.45
LHX3Q9UBR4 RNU6-182P-201ENST00000516970 105 ntBASIC-0.25□□□□□ -2.45
LHX3Q9UBR4 MIR548AG2-201ENST00000581228 64 ntBASIC-0.25□□□□□ -2.45
LHX3Q9UBR4 MIR6086-201ENST00000638065 55 ntBASIC-0.25□□□□□ -2.45
LHX3Q9UBR4 Y_RNA.215-201ENST00000364204 112 ntBASIC-0.26□□□□□ -2.45
LHX3Q9UBR4 Y_RNA.270-201ENST00000364693 104 ntBASIC-0.26□□□□□ -2.45
LHX3Q9UBR4 MIR548D2-201ENST00000384955 97 ntBASIC-0.26□□□□□ -2.45
LHX3Q9UBR4 AL158147.1-201ENST00000443970 75 ntBASIC-0.26□□□□□ -2.45
LHX3Q9UBR4 SNORA25.13-201ENST00000516395 103 ntBASIC-0.26□□□□□ -2.45
LHX3Q9UBR4 RNU6-1234P-201ENST00000516877 103 ntBASIC-0.26□□□□□ -2.45
LHX3Q9UBR4 MIR4802-201ENST00000581881 80 ntBASIC-0.26□□□□□ -2.45
LHX3Q9UBR4 MIR4473-201ENST00000583731 91 ntBASIC-0.26□□□□□ -2.45
LHX3Q9UBR4 Y_RNA.400-201ENST00000383963 111 ntBASIC-0.27□□□□□ -2.45
LHX3Q9UBR4 MIR519E-201ENST00000385075 84 ntBASIC-0.27□□□□□ -2.45
LHX3Q9UBR4 RNU6-1254P-201ENST00000391266 104 ntBASIC-0.27□□□□□ -2.45
LHX3Q9UBR4 Z95118.1-201ENST00000421372 247 ntBASIC-0.27□□□□□ -2.45
LHX3Q9UBR4 AL161932.1-201ENST00000437408 146 ntBASIC-0.27□□□□□ -2.45
LHX3Q9UBR4 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC-0.27□□□□□ -2.45
LHX3Q9UBR4 MIR4645-201ENST00000583158 77 ntBASIC-0.27□□□□□ -2.45
LHX3Q9UBR4 U7.2-201ENST00000607576 63 ntBASIC-0.27□□□□□ -2.45
LHX3Q9UBR4 Y_RNA.150-201ENST00000363562 102 ntBASIC-0.28□□□□□ -2.45
LHX3Q9UBR4 Y_RNA.247-201ENST00000364500 92 ntBASIC-0.28□□□□□ -2.45
LHX3Q9UBR4 MIR569-201ENST00000385228 96 ntBASIC-0.28□□□□□ -2.45
LHX3Q9UBR4 RNU6-243P-201ENST00000391140 107 ntBASIC-0.28□□□□□ -2.45
LHX3Q9UBR4 RNU6-235P-201ENST00000362644 107 ntBASIC-0.29□□□□□ -2.46
LHX3Q9UBR4 Y_RNA.57-201ENST00000362806 113 ntBASIC-0.29□□□□□ -2.46
LHX3Q9UBR4 RNU6-363P-201ENST00000362895 105 ntBASIC-0.29□□□□□ -2.46
LHX3Q9UBR4 RNU6-1163P-201ENST00000364516 107 ntBASIC-0.29□□□□□ -2.46
LHX3Q9UBR4 SNORD115-44-201ENST00000365391 82 ntBASIC-0.29□□□□□ -2.46
LHX3Q9UBR4 SNORD114-12-201ENST00000365400 75 ntBASIC-0.29□□□□□ -2.46
LHX3Q9UBR4 RNU6-1201P-201ENST00000384227 107 ntBASIC-0.29□□□□□ -2.46
LHX3Q9UBR4 MIR617-201ENST00000385030 97 ntBASIC-0.29□□□□□ -2.46
LHX3Q9UBR4 AL078595.1-201ENST00000404458 226 ntBASIC-0.29□□□□□ -2.46
LHX3Q9UBR4 RNU6-1006P-201ENST00000516998 103 ntBASIC-0.29□□□□□ -2.46
LHX3Q9UBR4 MTND5P41-201ENST00000517498 206 ntBASIC-0.29□□□□□ -2.46
LHX3Q9UBR4 CR383656.4-201ENST00000546909 122 ntBASIC-0.29□□□□□ -2.46
LHX3Q9UBR4 AL670379.3-201ENST00000605040 251 ntBASIC-0.29□□□□□ -2.46
LHX3Q9UBR4 RNU6-90P-201ENST00000606352 106 ntBASIC-0.29□□□□□ -2.46
LHX3Q9UBR4 RNU6-1313P-201ENST00000362622 102 ntBASIC-0.3□□□□□ -2.46
LHX3Q9UBR4 SNORD36A-201ENST00000362874 73 ntBASIC-0.3□□□□□ -2.46
LHX3Q9UBR4 Y_RNA.155-201ENST00000363632 101 ntBASIC-0.3□□□□□ -2.46
LHX3Q9UBR4 Y_RNA.344-201ENST00000365381 112 ntBASIC-0.3□□□□□ -2.46
LHX3Q9UBR4 MIR876-201ENST00000401147 81 ntBASIC-0.3□□□□□ -2.46
LHX3Q9UBR4 MIR548G-201ENST00000408442 89 ntBASIC-0.3□□□□□ -2.46
LHX3Q9UBR4 MIR2113-201ENST00000459007 91 ntBASIC-0.3□□□□□ -2.46
LHX3Q9UBR4 RNU6-287P-201ENST00000516230 98 ntBASIC-0.3□□□□□ -2.46
LHX3Q9UBR4 YWHAEP2-201ENST00000580066 112 ntBASIC-0.3□□□□□ -2.46
LHX3Q9UBR4 AP001180.6-201ENST00000584918 159 ntBASIC-0.3□□□□□ -2.46
LHX3Q9UBR4 TRDV1-202ENST00000621643 102 ntBASIC-0.3□□□□□ -2.46
LHX3Q9UBR4 RNU6-46P-201ENST00000383860 107 ntBASIC-0.31□□□□□ -2.46
LHX3Q9UBR4 SNORA51.5-201ENST00000384126 131 ntBASIC-0.31□□□□□ -2.46
LHX3Q9UBR4 AL353813.1-201ENST00000440700 253 ntBASIC-0.31□□□□□ -2.46
LHX3Q9UBR4 SNORD4A-201ENST00000459174 72 ntBASIC-0.31□□□□□ -2.46
LHX3Q9UBR4 RNU6-1061P-201ENST00000516530 99 ntBASIC-0.31□□□□□ -2.46
LHX3Q9UBR4 AC069503.3-201ENST00000618674 145 ntBASIC-0.31□□□□□ -2.46
LHX3Q9UBR4 FTX_2.1-201ENST00000618816 94 ntBASIC-0.31□□□□□ -2.46
LHX3Q9UBR4 SNORA18.1-201ENST00000363418 128 ntBASIC-0.32□□□□□ -2.46
LHX3Q9UBR4 SNORD114-28-201ENST00000363610 72 ntBASIC-0.32□□□□□ -2.46
LHX3Q9UBR4 SNORD38.1-201ENST00000363863 68 ntBASIC-0.32□□□□□ -2.46
LHX3Q9UBR4 RNU6-409P-201ENST00000384114 104 ntBASIC-0.32□□□□□ -2.46
LHX3Q9UBR4 Y_RNA.507-201ENST00000384500 99 ntBASIC-0.32□□□□□ -2.46
LHX3Q9UBR4 AC093423.1-201ENST00000440817 142 ntBASIC-0.32□□□□□ -2.46
LHX3Q9UBR4 RNU6-758P-201ENST00000516292 89 ntBASIC-0.32□□□□□ -2.46
LHX3Q9UBR4 RNU6-426P-201ENST00000516464 97 ntBASIC-0.32□□□□□ -2.46
LHX3Q9UBR4 MIR4460-201ENST00000577862 86 ntBASIC-0.32□□□□□ -2.46
LHX3Q9UBR4 U6.100-201ENST00000636230 99 ntBASIC-0.32□□□□□ -2.46
LHX3Q9UBR4 RNU6-886P-201ENST00000384319 105 ntBASIC-0.33□□□□□ -2.46
LHX3Q9UBR4 Y_RNA.488-201ENST00000384403 102 ntBASIC-0.33□□□□□ -2.46
LHX3Q9UBR4 RNU6-320P-201ENST00000516511 106 ntBASIC-0.33□□□□□ -2.46
LHX3Q9UBR4 RNA5SP476-201ENST00000516613 103 ntBASIC-0.33□□□□□ -2.46
LHX3Q9UBR4 RNU5B-6P-201ENST00000516765 68 ntBASIC-0.33□□□□□ -2.46
LHX3Q9UBR4 AC025166.1-201ENST00000612411 163 ntBASIC-0.33□□□□□ -2.46
LHX3Q9UBR4 MIR8064-201ENST00000612863 90 ntBASIC-0.33□□□□□ -2.46
LHX3Q9UBR4 RN7SL660P-201ENST00000614852 299 ntBASIC-0.33□□□□□ -2.46
LHX3Q9UBR4 uc_338.10-201ENST00000621872 182 ntBASIC-0.33□□□□□ -2.46
LHX3Q9UBR4 RNU6-957P-201ENST00000363652 99 ntBASIC-0.34□□□□□ -2.46
LHX3Q9UBR4 RNY4P6-201ENST00000363667 96 ntBASIC-0.34□□□□□ -2.46
LHX3Q9UBR4 MIR181B2-201ENST00000385004 89 ntBASIC-0.34□□□□□ -2.46
LHX3Q9UBR4 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC-0.34□□□□□ -2.46
LHX3Q9UBR4 RNU6-1018P-201ENST00000516577 106 ntBASIC-0.34□□□□□ -2.46
LHX3Q9UBR4 RNU7-188P-201ENST00000517063 64 ntBASIC-0.34□□□□□ -2.46
LHX3Q9UBR4 MIR4493-201ENST00000584016 73 ntBASIC-0.34□□□□□ -2.46
LHX3Q9UBR4 MTND5P18-201ENST00000445624 1801 ntBASIC-0.35□□□□□ -2.47
LHX3Q9UBR4 MIR148A-201ENST00000362215 68 ntBASIC-0.35□□□□□ -2.47
LHX3Q9UBR4 Y_RNA.173-201ENST00000363776 113 ntBASIC-0.35□□□□□ -2.47
LHX3Q9UBR4 SNORD58C-201ENST00000365223 64 ntBASIC-0.35□□□□□ -2.47
LHX3Q9UBR4 MIR604-201ENST00000384880 94 ntBASIC-0.35□□□□□ -2.47
LHX3Q9UBR4 RNU6-816P-201ENST00000390914 107 ntBASIC-0.35□□□□□ -2.47
LHX3Q9UBR4 snosnR66.1-201ENST00000391095 99 ntBASIC-0.35□□□□□ -2.47
LHX3Q9UBR4 RNU6-1268P-201ENST00000391214 107 ntBASIC-0.35□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 212 ms