Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 MIR18A-201ENST00000362310 71 ntBASIC0.98□□□□□ -2.25
PCIF1Q9H4Z3 Y_RNA.220-201ENST00000364244 109 ntBASIC0.98□□□□□ -2.25
PCIF1Q9H4Z3 MIR608-201ENST00000384820 100 ntBASIC0.98□□□□□ -2.25
PCIF1Q9H4Z3 snoU13.11-201ENST00000459219 104 ntBASIC0.98□□□□□ -2.25
PCIF1Q9H4Z3 ACA64.5-201ENST00000516207 127 ntBASIC0.98□□□□□ -2.25
PCIF1Q9H4Z3 RNU6-524P-201ENST00000384270 107 ntBASIC0.97□□□□□ -2.25
PCIF1Q9H4Z3 MIR532-201ENST00000385025 91 ntBASIC0.97□□□□□ -2.25
PCIF1Q9H4Z3 AL606490.4-201ENST00000423117 127 ntBASIC0.97□□□□□ -2.25
PCIF1Q9H4Z3 Y_RNA.648-201ENST00000459455 110 ntBASIC0.97□□□□□ -2.25
PCIF1Q9H4Z3 RNU6-469P-201ENST00000516253 101 ntBASIC0.97□□□□□ -2.25
PCIF1Q9H4Z3 MIR3678-201ENST00000578455 94 ntBASIC0.97□□□□□ -2.25
PCIF1Q9H4Z3 MIR5582-201ENST00000579697 68 ntBASIC0.97□□□□□ -2.25
PCIF1Q9H4Z3 MIR6857-201ENST00000613267 93 ntBASIC0.97□□□□□ -2.25
PCIF1Q9H4Z3 MIR489-201ENST00000384923 84 ntBASIC0.96□□□□□ -2.26
PCIF1Q9H4Z3 RNA5SP222-201ENST00000411039 105 ntBASIC0.96□□□□□ -2.26
PCIF1Q9H4Z3 AL161932.1-201ENST00000437408 146 ntBASIC0.96□□□□□ -2.26
PCIF1Q9H4Z3 MIR6734-201ENST00000621166 68 ntBASIC0.96□□□□□ -2.26
PCIF1Q9H4Z3 MIR373-201ENST00000362273 69 ntBASIC0.95□□□□□ -2.26
PCIF1Q9H4Z3 SNORD115-24-201ENST00000363528 82 ntBASIC0.95□□□□□ -2.26
PCIF1Q9H4Z3 SNORD18A-201ENST00000363753 72 ntBASIC0.95□□□□□ -2.26
PCIF1Q9H4Z3 Y_RNA.221-201ENST00000364248 96 ntBASIC0.95□□□□□ -2.26
PCIF1Q9H4Z3 RNU7-85P-201ENST00000458851 63 ntBASIC0.95□□□□□ -2.26
PCIF1Q9H4Z3 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.95□□□□□ -2.26
PCIF1Q9H4Z3 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.95□□□□□ -2.26
PCIF1Q9H4Z3 RNU6-957P-201ENST00000363652 99 ntBASIC0.94□□□□□ -2.26
PCIF1Q9H4Z3 Y_RNA.283-201ENST00000364798 112 ntBASIC0.94□□□□□ -2.26
PCIF1Q9H4Z3 RNY1P8-201ENST00000383970 114 ntBASIC0.94□□□□□ -2.26
PCIF1Q9H4Z3 RNU6-466P-201ENST00000391224 103 ntBASIC0.94□□□□□ -2.26
PCIF1Q9H4Z3 RNU6-1265P-201ENST00000516342 103 ntBASIC0.94□□□□□ -2.26
PCIF1Q9H4Z3 RNU6-135P-201ENST00000516769 101 ntBASIC0.94□□□□□ -2.26
PCIF1Q9H4Z3 TRDV1-202ENST00000621643 102 ntBASIC0.94□□□□□ -2.26
PCIF1Q9H4Z3 MIR520E-201ENST00000384867 87 ntBASIC0.93□□□□□ -2.26
PCIF1Q9H4Z3 RNU6-1223P-201ENST00000517124 104 ntBASIC0.93□□□□□ -2.26
PCIF1Q9H4Z3 RNU7-161P-201ENST00000517289 62 ntBASIC0.93□□□□□ -2.26
PCIF1Q9H4Z3 MIR6788-201ENST00000618842 66 ntBASIC0.93□□□□□ -2.26
PCIF1Q9H4Z3 RNA5SP403-201ENST00000363598 108 ntBASIC0.92□□□□□ -2.26
PCIF1Q9H4Z3 RNU4-45P-201ENST00000365469 141 ntBASIC0.92□□□□□ -2.26
PCIF1Q9H4Z3 SNORD28-201ENST00000384706 75 ntBASIC0.92□□□□□ -2.26
PCIF1Q9H4Z3 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.92□□□□□ -2.26
PCIF1Q9H4Z3 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.92□□□□□ -2.26
PCIF1Q9H4Z3 Y_RNA.609-201ENST00000410669 89 ntBASIC0.92□□□□□ -2.26
PCIF1Q9H4Z3 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.92□□□□□ -2.26
PCIF1Q9H4Z3 RNU6-844P-201ENST00000517175 102 ntBASIC0.92□□□□□ -2.26
PCIF1Q9H4Z3 MIR4639-201ENST00000584938 69 ntBASIC0.92□□□□□ -2.26
PCIF1Q9H4Z3 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.91□□□□□ -2.26
PCIF1Q9H4Z3 Y_RNA.369-201ENST00000365568 117 ntBASIC0.91□□□□□ -2.26
PCIF1Q9H4Z3 RNU6-519P-201ENST00000410590 108 ntBASIC0.91□□□□□ -2.26
PCIF1Q9H4Z3 RNU6-75P-201ENST00000515944 104 ntBASIC0.91□□□□□ -2.26
PCIF1Q9H4Z3 AC026421.1-201ENST00000519101 163 ntBASIC0.91□□□□□ -2.26
PCIF1Q9H4Z3 MIR151B-201ENST00000584249 96 ntBASIC0.91□□□□□ -2.26
PCIF1Q9H4Z3 AC244669.1-204ENST00000621564 178 ntBASIC0.91□□□□□ -2.26
PCIF1Q9H4Z3 Y_RNA.43-201ENST00000362670 111 ntBASIC0.9□□□□□ -2.27
PCIF1Q9H4Z3 RNU6-1255P-201ENST00000363434 112 ntBASIC0.9□□□□□ -2.27
PCIF1Q9H4Z3 RNU6-1229P-201ENST00000364295 107 ntBASIC0.9□□□□□ -2.27
PCIF1Q9H4Z3 RNU6-1187P-201ENST00000364771 110 ntBASIC0.9□□□□□ -2.27
PCIF1Q9H4Z3 SNORD4B-201ENST00000459083 72 ntBASIC0.9□□□□□ -2.27
PCIF1Q9H4Z3 RNU7-104P-201ENST00000459398 79 ntBASIC0.9□□□□□ -2.27
PCIF1Q9H4Z3 RNA5SP47-201ENST00000517230 109 ntBASIC0.9□□□□□ -2.27
PCIF1Q9H4Z3 U6.100-201ENST00000636230 99 ntBASIC0.9□□□□□ -2.27
PCIF1Q9H4Z3 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.89□□□□□ -2.27
PCIF1Q9H4Z3 SNORD114-2-201ENST00000363953 78 ntBASIC0.89□□□□□ -2.27
PCIF1Q9H4Z3 SNORA36.2-201ENST00000384004 127 ntBASIC0.89□□□□□ -2.27
PCIF1Q9H4Z3 RPS29P1-201ENST00000465274 159 ntBASIC0.89□□□□□ -2.27
PCIF1Q9H4Z3 PSMC1P5-201ENST00000512850 177 ntBASIC0.89□□□□□ -2.27
PCIF1Q9H4Z3 AC211469.2-201ENST00000605461 205 ntBASIC0.89□□□□□ -2.27
PCIF1Q9H4Z3 AC022709.1-201ENST00000615967 87 ntBASIC0.89□□□□□ -2.27
PCIF1Q9H4Z3 MIR548J-201ENST00000408833 112 ntBASIC0.88□□□□□ -2.27
PCIF1Q9H4Z3 RNA5SP94-201ENST00000516917 108 ntBASIC0.88□□□□□ -2.27
PCIF1Q9H4Z3 SNORA36.1-201ENST00000363424 132 ntBASIC0.87□□□□□ -2.27
PCIF1Q9H4Z3 RNU6-294P-201ENST00000364999 102 ntBASIC0.87□□□□□ -2.27
PCIF1Q9H4Z3 MIR140-201ENST00000385282 100 ntBASIC0.87□□□□□ -2.27
PCIF1Q9H4Z3 RNU6-351P-201ENST00000516097 100 ntBASIC0.87□□□□□ -2.27
PCIF1Q9H4Z3 RNU6-65P-201ENST00000516332 98 ntBASIC0.87□□□□□ -2.27
PCIF1Q9H4Z3 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.87□□□□□ -2.27
PCIF1Q9H4Z3 RNU6-1134P-201ENST00000365156 101 ntBASIC0.86□□□□□ -2.27
PCIF1Q9H4Z3 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.86□□□□□ -2.27
PCIF1Q9H4Z3 SCARNA16.5-201ENST00000517114 183 ntBASIC0.86□□□□□ -2.27
PCIF1Q9H4Z3 MIR4668-201ENST00000582284 70 ntBASIC0.86□□□□□ -2.27
PCIF1Q9H4Z3 MIR4536-1-201ENST00000583537 88 ntBASIC0.86□□□□□ -2.27
PCIF1Q9H4Z3 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
PCIF1Q9H4Z3 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.85□□□□□ -2.27
PCIF1Q9H4Z3 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.85□□□□□ -2.27
PCIF1Q9H4Z3 MIR6515-201ENST00000619843 57 ntBASIC0.85□□□□□ -2.27
PCIF1Q9H4Z3 RNU6-219P-201ENST00000364728 107 ntBASIC0.84□□□□□ -2.27
PCIF1Q9H4Z3 SNORD116-22-201ENST00000384430 92 ntBASIC0.84□□□□□ -2.27
PCIF1Q9H4Z3 RNU6-110P-201ENST00000384508 104 ntBASIC0.84□□□□□ -2.27
PCIF1Q9H4Z3 RNY1P4-201ENST00000384595 115 ntBASIC0.84□□□□□ -2.27
PCIF1Q9H4Z3 RNU6-402P-201ENST00000410678 103 ntBASIC0.84□□□□□ -2.27
PCIF1Q9H4Z3 RNU7-13P-201ENST00000516413 62 ntBASIC0.84□□□□□ -2.27
PCIF1Q9H4Z3 MTRNR2L2-201ENST00000604882 87 ntBASIC0.84□□□□□ -2.27
PCIF1Q9H4Z3 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.84□□□□□ -2.27
PCIF1Q9H4Z3 RNU6-132P-201ENST00000383863 107 ntBASIC0.83□□□□□ -2.28
PCIF1Q9H4Z3 Y_RNA.593-201ENST00000410292 98 ntBASIC0.83□□□□□ -2.28
PCIF1Q9H4Z3 Y_RNA.596-201ENST00000410462 109 ntBASIC0.83□□□□□ -2.28
PCIF1Q9H4Z3 Y_RNA.620-201ENST00000411009 88 ntBASIC0.83□□□□□ -2.28
PCIF1Q9H4Z3 MIR3920-201ENST00000581751 86 ntBASIC0.83□□□□□ -2.28
PCIF1Q9H4Z3 AC067863.3-201ENST00000624172 122 ntBASIC0.83□□□□□ -2.28
PCIF1Q9H4Z3 MIR6828-201ENST00000636181 60 ntBASIC0.83□□□□□ -2.28
PCIF1Q9H4Z3 MIR6866-201ENST00000638146 69 ntBASIC0.83□□□□□ -2.28
PCIF1Q9H4Z3 MIRLET7F1-201ENST00000362202 87 ntBASIC0.82□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 268.9 ms