Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 MIR5009-201ENST00000578736 100 ntBASIC0.2□□□□□ -2.38
CCDC28BQ9BUN5 MIR5706-201ENST00000579841 80 ntBASIC0.2□□□□□ -2.38
CCDC28BQ9BUN5 MIR6755-201ENST00000619993 66 ntBASIC0.2□□□□□ -2.38
CCDC28BQ9BUN5 U8.6-201ENST00000364939 135 ntBASIC0.19□□□□□ -2.38
CCDC28BQ9BUN5 SNORA2A-201ENST00000383885 135 ntBASIC0.19□□□□□ -2.38
CCDC28BQ9BUN5 RNU6-524P-201ENST00000384270 107 ntBASIC0.19□□□□□ -2.38
CCDC28BQ9BUN5 RNU6-243P-201ENST00000391140 107 ntBASIC0.19□□□□□ -2.38
CCDC28BQ9BUN5 AC073261.1-201ENST00000429409 121 ntBASIC0.19□□□□□ -2.38
CCDC28BQ9BUN5 RNU7-74P-201ENST00000459104 62 ntBASIC0.19□□□□□ -2.38
CCDC28BQ9BUN5 RNU7-13P-201ENST00000516413 62 ntBASIC0.19□□□□□ -2.38
CCDC28BQ9BUN5 MIR4315-1-201ENST00000636800 73 ntBASIC0.19□□□□□ -2.38
CCDC28BQ9BUN5 MIR4315-2-201ENST00000640925 73 ntBASIC0.19□□□□□ -2.38
CCDC28BQ9BUN5 AC073869.9-201ENST00000641610 120 ntBASIC0.19□□□□□ -2.38
CCDC28BQ9BUN5 SNORA9.1-201ENST00000362412 131 ntBASIC0.18□□□□□ -2.38
CCDC28BQ9BUN5 SNORD36A-201ENST00000362874 73 ntBASIC0.18□□□□□ -2.38
CCDC28BQ9BUN5 RNU6-832P-201ENST00000363319 107 ntBASIC0.18□□□□□ -2.38
CCDC28BQ9BUN5 SNORD114-26-201ENST00000363543 72 ntBASIC0.18□□□□□ -2.38
CCDC28BQ9BUN5 SNORD115-44-201ENST00000365391 82 ntBASIC0.18□□□□□ -2.38
CCDC28BQ9BUN5 RNU6-1117P-201ENST00000384525 104 ntBASIC0.18□□□□□ -2.38
CCDC28BQ9BUN5 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.18□□□□□ -2.38
CCDC28BQ9BUN5 RNU6-62P-201ENST00000516526 102 ntBASIC0.18□□□□□ -2.38
CCDC28BQ9BUN5 MIR1273G-201ENST00000577677 100 ntBASIC0.18□□□□□ -2.38
CCDC28BQ9BUN5 MIR3910-1-201ENST00000580936 111 ntBASIC0.18□□□□□ -2.38
CCDC28BQ9BUN5 AC132825.6-201ENST00000638861 357 ntBASIC0.18□□□□□ -2.38
CCDC28BQ9BUN5 RNU6-509P-201ENST00000363519 107 ntBASIC0.17□□□□□ -2.38
CCDC28BQ9BUN5 RNU6-1125P-201ENST00000363601 107 ntBASIC0.17□□□□□ -2.38
CCDC28BQ9BUN5 Y_RNA.423-201ENST00000384057 113 ntBASIC0.17□□□□□ -2.38
CCDC28BQ9BUN5 RNU6-815P-201ENST00000384080 113 ntBASIC0.17□□□□□ -2.38
CCDC28BQ9BUN5 Y_RNA.466-201ENST00000384294 113 ntBASIC0.17□□□□□ -2.38
CCDC28BQ9BUN5 RNU6-480P-201ENST00000384332 107 ntBASIC0.17□□□□□ -2.38
CCDC28BQ9BUN5 SNORD116-21-201ENST00000384507 92 ntBASIC0.17□□□□□ -2.38
CCDC28BQ9BUN5 SNORA62.5-201ENST00000516634 120 ntBASIC0.17□□□□□ -2.38
CCDC28BQ9BUN5 MIR3920-201ENST00000581751 86 ntBASIC0.17□□□□□ -2.38
CCDC28BQ9BUN5 MIR4439-201ENST00000583746 80 ntBASIC0.17□□□□□ -2.38
CCDC28BQ9BUN5 U7.6-201ENST00000610841 64 ntBASIC0.17□□□□□ -2.38
CCDC28BQ9BUN5 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.17□□□□□ -2.38
CCDC28BQ9BUN5 RNU6-834P-201ENST00000362367 110 ntBASIC0.16□□□□□ -2.38
CCDC28BQ9BUN5 Y_RNA.10-201ENST00000362371 110 ntBASIC0.16□□□□□ -2.38
CCDC28BQ9BUN5 Y_RNA.261-201ENST00000364631 102 ntBASIC0.16□□□□□ -2.38
CCDC28BQ9BUN5 RNU6-269P-201ENST00000391077 97 ntBASIC0.16□□□□□ -2.38
CCDC28BQ9BUN5 MIR1295A-201ENST00000408463 79 ntBASIC0.16□□□□□ -2.38
CCDC28BQ9BUN5 RNU1-29P-201ENST00000606574 126 ntBASIC0.16□□□□□ -2.38
CCDC28BQ9BUN5 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.16□□□□□ -2.38
CCDC28BQ9BUN5 RNU6-1163P-201ENST00000364516 107 ntBASIC0.15□□□□□ -2.39
CCDC28BQ9BUN5 RNA5SP205-201ENST00000364653 136 ntBASIC0.15□□□□□ -2.39
CCDC28BQ9BUN5 RNA5SP128-201ENST00000365305 116 ntBASIC0.15□□□□□ -2.39
CCDC28BQ9BUN5 SNORD113-1-201ENST00000365321 69 ntBASIC0.15□□□□□ -2.39
CCDC28BQ9BUN5 RNU6-1144P-201ENST00000384247 104 ntBASIC0.15□□□□□ -2.39
CCDC28BQ9BUN5 RNU6-22P-201ENST00000384355 107 ntBASIC0.15□□□□□ -2.39
CCDC28BQ9BUN5 MIR760-201ENST00000390220 80 ntBASIC0.15□□□□□ -2.39
CCDC28BQ9BUN5 RNU6-1168P-201ENST00000390831 104 ntBASIC0.15□□□□□ -2.39
CCDC28BQ9BUN5 RNU6-479P-201ENST00000516348 105 ntBASIC0.15□□□□□ -2.39
CCDC28BQ9BUN5 AC141557.1-201ENST00000540982 400 ntBASIC0.15□□□□□ -2.39
CCDC28BQ9BUN5 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.15□□□□□ -2.39
CCDC28BQ9BUN5 AL365222.1-201ENST00000614661 98 ntBASIC0.15□□□□□ -2.39
CCDC28BQ9BUN5 SNORA42.1-201ENST00000363515 137 ntBASIC0.14□□□□□ -2.39
CCDC28BQ9BUN5 Y_RNA.163-201ENST00000363702 113 ntBASIC0.14□□□□□ -2.39
CCDC28BQ9BUN5 SNORD45B-201ENST00000364617 72 ntBASIC0.14□□□□□ -2.39
CCDC28BQ9BUN5 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.14□□□□□ -2.39
CCDC28BQ9BUN5 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.14□□□□□ -2.39
CCDC28BQ9BUN5 MIR924-201ENST00000638017 53 ntBASIC0.14□□□□□ -2.39
CCDC28BQ9BUN5 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC0.14□□□□□ -2.39
CCDC28BQ9BUN5 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.13□□□□□ -2.39
CCDC28BQ9BUN5 RNU4-36P-201ENST00000364294 144 ntBASIC0.13□□□□□ -2.39
CCDC28BQ9BUN5 RNU6-1107P-201ENST00000364817 104 ntBASIC0.13□□□□□ -2.39
CCDC28BQ9BUN5 RNU6-1014P-201ENST00000383940 103 ntBASIC0.13□□□□□ -2.39
CCDC28BQ9BUN5 RNU6-476P-201ENST00000384726 107 ntBASIC0.13□□□□□ -2.39
CCDC28BQ9BUN5 RNA5SP299-201ENST00000391203 116 ntBASIC0.13□□□□□ -2.39
CCDC28BQ9BUN5 RNU6-1064P-201ENST00000410626 104 ntBASIC0.13□□□□□ -2.39
CCDC28BQ9BUN5 Y_RNA.659-201ENST00000515994 113 ntBASIC0.13□□□□□ -2.39
CCDC28BQ9BUN5 MIR4752-201ENST00000579672 72 ntBASIC0.13□□□□□ -2.39
CCDC28BQ9BUN5 MIR4514-201ENST00000581410 57 ntBASIC0.13□□□□□ -2.39
CCDC28BQ9BUN5 uc_338.28-201ENST00000612082 187 ntBASIC0.13□□□□□ -2.39
CCDC28BQ9BUN5 TRDV1-202ENST00000621643 102 ntBASIC0.13□□□□□ -2.39
CCDC28BQ9BUN5 RNU6-1244P-201ENST00000363614 108 ntBASIC0.12□□□□□ -2.39
CCDC28BQ9BUN5 Y_RNA.205-201ENST00000364128 113 ntBASIC0.12□□□□□ -2.39
CCDC28BQ9BUN5 Y_RNA.540-201ENST00000384638 111 ntBASIC0.12□□□□□ -2.39
CCDC28BQ9BUN5 MIR617-201ENST00000385030 97 ntBASIC0.12□□□□□ -2.39
CCDC28BQ9BUN5 Y_RNA.78-201ENST00000362970 110 ntBASIC0.11□□□□□ -2.39
CCDC28BQ9BUN5 MIR181B2-201ENST00000385004 89 ntBASIC0.11□□□□□ -2.39
CCDC28BQ9BUN5 RNU6-466P-201ENST00000391224 103 ntBASIC0.11□□□□□ -2.39
CCDC28BQ9BUN5 Y_RNA.596-201ENST00000410462 109 ntBASIC0.11□□□□□ -2.39
CCDC28BQ9BUN5 Y_RNA.601-201ENST00000410500 113 ntBASIC0.11□□□□□ -2.39
CCDC28BQ9BUN5 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0.11□□□□□ -2.39
CCDC28BQ9BUN5 AC109327.2-201ENST00000448339 378 ntBASIC0.11□□□□□ -2.39
CCDC28BQ9BUN5 RNU6-313P-201ENST00000516317 112 ntBASIC0.11□□□□□ -2.39
CCDC28BQ9BUN5 MTRNR2L2-201ENST00000604882 87 ntBASIC0.11□□□□□ -2.39
CCDC28BQ9BUN5 SNORA70.25-201ENST00000612741 95 ntBASIC0.11□□□□□ -2.39
CCDC28BQ9BUN5 MIR330-201ENST00000362196 94 ntBASIC0.1□□□□□ -2.39
CCDC28BQ9BUN5 Y_RNA.95-201ENST00000363079 95 ntBASIC0.1□□□□□ -2.39
CCDC28BQ9BUN5 RNU6-1056P-201ENST00000383996 107 ntBASIC0.1□□□□□ -2.39
CCDC28BQ9BUN5 MIR7-2-201ENST00000384970 110 ntBASIC0.1□□□□□ -2.39
CCDC28BQ9BUN5 RNU6-1154P-201ENST00000391001 104 ntBASIC0.1□□□□□ -2.39
CCDC28BQ9BUN5 RNU6-789P-201ENST00000517105 102 ntBASIC0.1□□□□□ -2.39
CCDC28BQ9BUN5 MIR3613-201ENST00000579844 87 ntBASIC0.1□□□□□ -2.39
CCDC28BQ9BUN5 RNU6-86P-201ENST00000606534 107 ntBASIC0.1□□□□□ -2.39
CCDC28BQ9BUN5 MIR8087-201ENST00000612745 78 ntBASIC0.1□□□□□ -2.39
CCDC28BQ9BUN5 MIR6779-201ENST00000617283 64 ntBASIC0.1□□□□□ -2.39
CCDC28BQ9BUN5 RNU6-127P-201ENST00000390897 107 ntBASIC0.09□□□□□ -2.4
CCDC28BQ9BUN5 SNORD110-201ENST00000408189 75 ntBASIC0.09□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 170.4 ms