Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RNU6-75P-201ENST00000515944 104 ntBASIC1.07□□□□□ -2.24
CCDC140Q96MF4 RNU1-92P-201ENST00000517017 135 ntBASIC1.07□□□□□ -2.24
CCDC140Q96MF4 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.07□□□□□ -2.24
CCDC140Q96MF4 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
CCDC140Q96MF4 ZNF209P-201ENST00000593450 2304 ntBASIC1.06□□□□□ -2.24
CCDC140Q96MF4 MIRLET7F1-201ENST00000362202 87 ntBASIC1.06□□□□□ -2.24
CCDC140Q96MF4 RNU6-820P-201ENST00000384273 107 ntBASIC1.06□□□□□ -2.24
CCDC140Q96MF4 RNY4P29-201ENST00000410801 97 ntBASIC1.06□□□□□ -2.24
CCDC140Q96MF4 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.06□□□□□ -2.24
CCDC140Q96MF4 RNU6ATAC17P-201ENST00000516074 71 ntBASIC1.06□□□□□ -2.24
CCDC140Q96MF4 ACA64.5-201ENST00000516207 127 ntBASIC1.06□□□□□ -2.24
CCDC140Q96MF4 AL353765.1-201ENST00000605514 183 ntBASIC1.06□□□□□ -2.24
CCDC140Q96MF4 MIR18A-201ENST00000362310 71 ntBASIC1.05□□□□□ -2.24
CCDC140Q96MF4 RNU6-633P-201ENST00000362612 103 ntBASIC1.05□□□□□ -2.24
CCDC140Q96MF4 SNORA7.1-201ENST00000363750 139 ntBASIC1.05□□□□□ -2.24
CCDC140Q96MF4 RNU6-1229P-201ENST00000364295 107 ntBASIC1.05□□□□□ -2.24
CCDC140Q96MF4 Y_RNA.327-201ENST00000365201 102 ntBASIC1.05□□□□□ -2.24
CCDC140Q96MF4 Y_RNA.388-201ENST00000383919 113 ntBASIC1.05□□□□□ -2.24
CCDC140Q96MF4 RNU7-104P-201ENST00000459398 79 ntBASIC1.05□□□□□ -2.24
CCDC140Q96MF4 RNU7-153P-201ENST00000516455 62 ntBASIC1.05□□□□□ -2.24
CCDC140Q96MF4 U6.100-201ENST00000636230 99 ntBASIC1.05□□□□□ -2.24
CCDC140Q96MF4 RNU6-509P-201ENST00000363519 107 ntBASIC1.04□□□□□ -2.24
CCDC140Q96MF4 SNORA25.9-201ENST00000365087 128 ntBASIC1.04□□□□□ -2.24
CCDC140Q96MF4 RNU6-811P-201ENST00000384069 107 ntBASIC1.04□□□□□ -2.24
CCDC140Q96MF4 RNU6-675P-201ENST00000384236 104 ntBASIC1.04□□□□□ -2.24
CCDC140Q96MF4 Y_RNA.508-201ENST00000384502 114 ntBASIC1.04□□□□□ -2.24
CCDC140Q96MF4 MIR499A-201ENST00000384903 122 ntBASIC1.04□□□□□ -2.24
CCDC140Q96MF4 MIR519C-201ENST00000385053 87 ntBASIC1.04□□□□□ -2.24
CCDC140Q96MF4 RN7SKP12-201ENST00000516275 143 ntBASIC1.04□□□□□ -2.24
CCDC140Q96MF4 RNU7-161P-201ENST00000517289 62 ntBASIC1.04□□□□□ -2.24
CCDC140Q96MF4 MIR8070-201ENST00000616510 88 ntBASIC1.04□□□□□ -2.24
CCDC140Q96MF4 AC244669.1-204ENST00000621564 178 ntBASIC1.04□□□□□ -2.24
CCDC140Q96MF4 RNU6-132P-201ENST00000383863 107 ntBASIC1.03□□□□□ -2.24
CCDC140Q96MF4 SNORA36.2-201ENST00000384004 127 ntBASIC1.03□□□□□ -2.24
CCDC140Q96MF4 MIR758-201ENST00000390227 88 ntBASIC1.03□□□□□ -2.24
CCDC140Q96MF4 MIR1236-201ENST00000408340 102 ntBASIC1.03□□□□□ -2.24
CCDC140Q96MF4 RNU1-123P-201ENST00000458950 160 ntBASIC1.03□□□□□ -2.24
CCDC140Q96MF4 AC004223.1-201ENST00000479840 271 ntBASIC1.03□□□□□ -2.24
CCDC140Q96MF4 AC022137.1-201ENST00000483735 151 ntBASIC1.03□□□□□ -2.24
CCDC140Q96MF4 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.03□□□□□ -2.24
CCDC140Q96MF4 AC068338.1-201ENST00000565567 176 ntBASIC1.03□□□□□ -2.24
CCDC140Q96MF4 MIR4421-201ENST00000578133 69 ntBASIC1.03□□□□□ -2.24
CCDC140Q96MF4 MIR548BB-201ENST00000626714 66 ntBASIC1.03□□□□□ -2.24
CCDC140Q96MF4 SNORD18A-201ENST00000363753 72 ntBASIC1.02□□□□□ -2.25
CCDC140Q96MF4 RNU6-497P-201ENST00000365316 104 ntBASIC1.02□□□□□ -2.25
CCDC140Q96MF4 SNORD28-201ENST00000384706 75 ntBASIC1.02□□□□□ -2.25
CCDC140Q96MF4 Y_RNA.596-201ENST00000410462 109 ntBASIC1.02□□□□□ -2.25
CCDC140Q96MF4 RNU7-13P-201ENST00000516413 62 ntBASIC1.02□□□□□ -2.25
CCDC140Q96MF4 AC067863.3-201ENST00000624172 122 ntBASIC1.02□□□□□ -2.25
CCDC140Q96MF4 RNA5SP403-201ENST00000363598 108 ntBASIC1.01□□□□□ -2.25
CCDC140Q96MF4 SNORD101-201ENST00000384027 73 ntBASIC1.01□□□□□ -2.25
CCDC140Q96MF4 MIR608-201ENST00000384820 100 ntBASIC1.01□□□□□ -2.25
CCDC140Q96MF4 MIR548U-201ENST00000390728 81 ntBASIC1.01□□□□□ -2.25
CCDC140Q96MF4 RNA5SP292-201ENST00000390974 118 ntBASIC1.01□□□□□ -2.25
CCDC140Q96MF4 MIR548L-201ENST00000408303 86 ntBASIC1.01□□□□□ -2.25
CCDC140Q96MF4 MIR1302-4-201ENST00000408701 150 ntBASIC1.01□□□□□ -2.25
CCDC140Q96MF4 RNU6-135P-201ENST00000516769 101 ntBASIC1.01□□□□□ -2.25
CCDC140Q96MF4 MIR3064-201ENST00000581130 66 ntBASIC1.01□□□□□ -2.25
CCDC140Q96MF4 MIR4639-201ENST00000584938 69 ntBASIC1.01□□□□□ -2.25
CCDC140Q96MF4 MIR7974-201ENST00000615835 79 ntBASIC1.01□□□□□ -2.25
CCDC140Q96MF4 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
CCDC140Q96MF4 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.01□□□□□ -2.25
CCDC140Q96MF4 RNU6-664P-201ENST00000362381 107 ntBASIC1□□□□□ -2.25
CCDC140Q96MF4 SNORD115-37-201ENST00000363768 82 ntBASIC1□□□□□ -2.25
CCDC140Q96MF4 RNA5SP173-201ENST00000364857 136 ntBASIC1□□□□□ -2.25
CCDC140Q96MF4 RNU6-392P-201ENST00000364926 101 ntBASIC1□□□□□ -2.25
CCDC140Q96MF4 RNU6-573P-201ENST00000383938 106 ntBASIC1□□□□□ -2.25
CCDC140Q96MF4 RNU6-1265P-201ENST00000516342 103 ntBASIC1□□□□□ -2.25
CCDC140Q96MF4 SNORA18.5-201ENST00000516616 101 ntBASIC1□□□□□ -2.25
CCDC140Q96MF4 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1□□□□□ -2.25
CCDC140Q96MF4 MIR4696-201ENST00000581431 70 ntBASIC1□□□□□ -2.25
CCDC140Q96MF4 MIR3660-201ENST00000584845 100 ntBASIC1□□□□□ -2.25
CCDC140Q96MF4 Y_RNA.239-201ENST00000364444 113 ntBASIC0.99□□□□□ -2.25
CCDC140Q96MF4 Y_RNA.491-201ENST00000384417 107 ntBASIC0.99□□□□□ -2.25
CCDC140Q96MF4 MIR518E-201ENST00000385252 88 ntBASIC0.99□□□□□ -2.25
CCDC140Q96MF4 SNORA40.6-201ENST00000391153 128 ntBASIC0.99□□□□□ -2.25
CCDC140Q96MF4 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
CCDC140Q96MF4 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.99□□□□□ -2.25
CCDC140Q96MF4 SNORA72.7-201ENST00000516349 94 ntBASIC0.99□□□□□ -2.25
CCDC140Q96MF4 MIR5588-201ENST00000581890 63 ntBASIC0.99□□□□□ -2.25
CCDC140Q96MF4 AC104996.3-201ENST00000590718 94 ntBASIC0.99□□□□□ -2.25
CCDC140Q96MF4 AL353770.2-201ENST00000620024 78 ntBASIC0.99□□□□□ -2.25
CCDC140Q96MF4 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
CCDC140Q96MF4 RNU6-716P-201ENST00000365621 103 ntBASIC0.98□□□□□ -2.25
CCDC140Q96MF4 RNY1P8-201ENST00000383970 114 ntBASIC0.98□□□□□ -2.25
CCDC140Q96MF4 RNU6-242P-201ENST00000384359 107 ntBASIC0.98□□□□□ -2.25
CCDC140Q96MF4 RNU6-592P-201ENST00000411333 103 ntBASIC0.98□□□□□ -2.25
CCDC140Q96MF4 AC093729.1-201ENST00000513074 128 ntBASIC0.98□□□□□ -2.25
CCDC140Q96MF4 RNU6-287P-201ENST00000516230 98 ntBASIC0.98□□□□□ -2.25
CCDC140Q96MF4 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.98□□□□□ -2.25
CCDC140Q96MF4 RNA5SP47-201ENST00000517230 109 ntBASIC0.97□□□□□ -2.25
CCDC140Q96MF4 MIR6078-201ENST00000611069 100 ntBASIC0.97□□□□□ -2.25
CCDC140Q96MF4 Y_RNA.207-201ENST00000364142 106 ntBASIC0.96□□□□□ -2.26
CCDC140Q96MF4 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.96□□□□□ -2.26
CCDC140Q96MF4 MIR3920-201ENST00000581751 86 ntBASIC0.96□□□□□ -2.26
CCDC140Q96MF4 AC211469.2-201ENST00000605461 205 ntBASIC0.96□□□□□ -2.26
CCDC140Q96MF4 MIR6504-201ENST00000613520 61 ntBASIC0.96□□□□□ -2.26
CCDC140Q96MF4 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.95□□□□□ -2.26
CCDC140Q96MF4 RNU4-45P-201ENST00000365469 141 ntBASIC0.95□□□□□ -2.26
CCDC140Q96MF4 Y_RNA.426-201ENST00000384068 113 ntBASIC0.95□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 159.1 ms