Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 RNU6-90P-201ENST00000606352 106 ntBASIC-1.54□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.120-201ENST00000363304 110 ntBASIC-1.54□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.157-201ENST00000363638 102 ntBASIC-1.54□□□□□ -2.66
CSPG4Q6UVK1 RNU6-563P-201ENST00000364872 108 ntBASIC-1.54□□□□□ -2.66
CSPG4Q6UVK1 MIR34C-201ENST00000384831 77 ntBASIC-1.54□□□□□ -2.66
CSPG4Q6UVK1 MTATP6P29-201ENST00000415057 132 ntBASIC-1.54□□□□□ -2.66
CSPG4Q6UVK1 RNU6-358P-201ENST00000516564 75 ntBASIC-1.54□□□□□ -2.66
CSPG4Q6UVK1 RNU6-835P-201ENST00000516974 104 ntBASIC-1.54□□□□□ -2.66
CSPG4Q6UVK1 U2.1-201ENST00000618978 145 ntBASIC-1.54□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.217-201ENST00000364214 105 ntBASIC-1.55□□□□□ -2.66
CSPG4Q6UVK1 RNU6-978P-201ENST00000364371 103 ntBASIC-1.55□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.641-201ENST00000459414 105 ntBASIC-1.55□□□□□ -2.66
CSPG4Q6UVK1 RNU6-1213P-201ENST00000517075 94 ntBASIC-1.55□□□□□ -2.66
CSPG4Q6UVK1 C8orf59P2-201ENST00000603441 271 ntBASIC-1.55□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.55□□□□□ -2.66
CSPG4Q6UVK1 AC024614.3-201ENST00000637860 256 ntBASIC-1.55□□□□□ -2.66
CSPG4Q6UVK1 UBE2WP1-201ENST00000362030 340 ntBASIC-1.55□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.176-201ENST00000363815 109 ntBASIC-1.55□□□□□ -2.66
CSPG4Q6UVK1 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC-1.55□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.55□□□□□ -2.66
CSPG4Q6UVK1 snoU13.10-201ENST00000459301 103 ntBASIC-1.55□□□□□ -2.66
CSPG4Q6UVK1 IGHVII-40-1-201ENST00000517316 58 ntBASIC-1.55□□□□□ -2.66
CSPG4Q6UVK1 AC073114.1-201ENST00000612027 490 ntBASIC-1.55□□□□□ -2.66
CSPG4Q6UVK1 RNU6-608P-201ENST00000383927 104 ntBASIC-1.56□□□□□ -2.66
CSPG4Q6UVK1 MIR548U-201ENST00000390728 81 ntBASIC-1.56□□□□□ -2.66
CSPG4Q6UVK1 RNU6-130P-201ENST00000411112 103 ntBASIC-1.56□□□□□ -2.66
CSPG4Q6UVK1 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC-1.56□□□□□ -2.66
CSPG4Q6UVK1 MTND3P10-201ENST00000450967 341 ntBASIC-1.56□□□□□ -2.66
CSPG4Q6UVK1 MTND5P5-201ENST00000503764 376 ntBASIC-1.56□□□□□ -2.66
CSPG4Q6UVK1 AC073869.6-201ENST00000640656 341 ntBASIC-1.56□□□□□ -2.66
CSPG4Q6UVK1 RNU6-1177P-201ENST00000391058 104 ntBASIC-1.56□□□□□ -2.66
CSPG4Q6UVK1 RNU6-651P-201ENST00000411040 105 ntBASIC-1.56□□□□□ -2.66
CSPG4Q6UVK1 MTATP6P21-201ENST00000440681 189 ntBASIC-1.56□□□□□ -2.66
CSPG4Q6UVK1 MTND1P1-201ENST00000445453 368 ntBASIC-1.56□□□□□ -2.66
CSPG4Q6UVK1 MTND4LP30-201ENST00000454092 297 ntBASIC-1.56□□□□□ -2.66
CSPG4Q6UVK1 Z69908.1-201ENST00000622603 247 ntBASIC-1.56□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.521-201ENST00000384560 114 ntBASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 MIR616-201ENST00000385293 97 ntBASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 MIR548F5-201ENST00000408421 86 ntBASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 RNU7-123P-201ENST00000515911 60 ntBASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 RNU6-65P-201ENST00000516332 98 ntBASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.708-201ENST00000516950 96 ntBASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 AC103591.3-201ENST00000608684 209 ntBASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 AC124864.2-201ENST00000624736 186 ntBASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.82-201ENST00000363000 102 ntBASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.92-201ENST00000363043 102 ntBASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.235-201ENST00000364412 102 ntBASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.306-201ENST00000365015 102 ntBASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.308-201ENST00000365043 101 ntBASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.312-201ENST00000365089 102 ntBASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.322-201ENST00000365151 102 ntBASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.650-201ENST00000459002 102 ntBASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 RNU6-307P-201ENST00000516743 106 ntBASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.777-201ENST00000516982 102 ntBASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 MIR4790-201ENST00000577799 79 ntBASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.771-201ENST00000598668 102 ntBASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 MIR6509-201ENST00000614603 85 ntBASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.789-201ENST00000622480 102 ntBASIC-1.57□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.75-201ENST00000362927 97 ntBASIC-1.58□□□□□ -2.66
CSPG4Q6UVK1 SNORD38.1-201ENST00000363863 68 ntBASIC-1.58□□□□□ -2.66
CSPG4Q6UVK1 RNU6-246P-201ENST00000384702 107 ntBASIC-1.58□□□□□ -2.66
CSPG4Q6UVK1 MIR521-2-201ENST00000384818 87 ntBASIC-1.58□□□□□ -2.66
CSPG4Q6UVK1 RNU6-780P-201ENST00000391030 104 ntBASIC-1.58□□□□□ -2.66
CSPG4Q6UVK1 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.58□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.622-201ENST00000411091 108 ntBASIC-1.58□□□□□ -2.66
CSPG4Q6UVK1 AL021921.1-201ENST00000442774 93 ntBASIC-1.58□□□□□ -2.66
CSPG4Q6UVK1 SEPT14P8-201ENST00000508026 178 ntBASIC-1.58□□□□□ -2.66
CSPG4Q6UVK1 NBR2-204ENST00000587322 63 ntBASIC-1.58□□□□□ -2.66
CSPG4Q6UVK1 AC005520.4-201ENST00000604337 90 ntBASIC-1.58□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.152-201ENST00000363578 100 ntBASIC-1.58□□□□□ -2.66
CSPG4Q6UVK1 RNU6-1188P-201ENST00000363795 107 ntBASIC-1.58□□□□□ -2.66
CSPG4Q6UVK1 RNU2-38P-201ENST00000410856 79 ntBASIC-1.58□□□□□ -2.66
CSPG4Q6UVK1 AC099799.1-201ENST00000439809 192 ntBASIC-1.58□□□□□ -2.66
CSPG4Q6UVK1 RNU6-62P-201ENST00000516526 102 ntBASIC-1.58□□□□□ -2.66
CSPG4Q6UVK1 AC009094.1-201ENST00000564443 426 ntBASIC-1.58□□□□□ -2.66
CSPG4Q6UVK1 AL138825.1-201ENST00000618587 192 ntBASIC-1.58□□□□□ -2.66
CSPG4Q6UVK1 MIR1321-201ENST00000637766 79 ntBASIC-1.58□□□□□ -2.66
CSPG4Q6UVK1 RNU4-90P-201ENST00000362773 141 ntBASIC-1.59□□□□□ -2.66
CSPG4Q6UVK1 SNORD116-6-201ENST00000384711 96 ntBASIC-1.59□□□□□ -2.66
CSPG4Q6UVK1 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC-1.59□□□□□ -2.66
CSPG4Q6UVK1 RNU6-232P-201ENST00000517144 64 ntBASIC-1.59□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.812-201ENST00000610788 101 ntBASIC-1.59□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.784-201ENST00000613803 101 ntBASIC-1.59□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.787-201ENST00000616522 101 ntBASIC-1.59□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.780-201ENST00000617336 101 ntBASIC-1.59□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.801-201ENST00000619005 101 ntBASIC-1.59□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.44-201ENST00000362676 108 ntBASIC-1.6□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.314-201ENST00000365114 102 ntBASIC-1.6□□□□□ -2.66
CSPG4Q6UVK1 RNU6-696P-201ENST00000390834 107 ntBASIC-1.6□□□□□ -2.66
CSPG4Q6UVK1 SNORA26.8-201ENST00000391306 124 ntBASIC-1.6□□□□□ -2.66
CSPG4Q6UVK1 Y_RNA.605-201ENST00000410577 105 ntBASIC-1.6□□□□□ -2.66
CSPG4Q6UVK1 snoU13.17-201ENST00000458802 104 ntBASIC-1.6□□□□□ -2.66
CSPG4Q6UVK1 AC082651.2-201ENST00000496833 166 ntBASIC-1.6□□□□□ -2.66
CSPG4Q6UVK1 MIR4748-201ENST00000578076 82 ntBASIC-1.6□□□□□ -2.66
CSPG4Q6UVK1 MIR3140-201ENST00000583685 90 ntBASIC-1.6□□□□□ -2.66
CSPG4Q6UVK1 SNORD58B-201ENST00000607313 66 ntBASIC-1.6□□□□□ -2.66
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms