Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC087741.2-201ENST00000619415 172 ntBASIC-0.15□□□□□ -2.43
VPS28Q9UK41 RNU6-509P-201ENST00000363519 107 ntBASIC-0.16□□□□□ -2.44
VPS28Q9UK41 Y_RNA.213-201ENST00000364178 111 ntBASIC-0.16□□□□□ -2.44
VPS28Q9UK41 Y_RNA.360-201ENST00000365512 102 ntBASIC-0.16□□□□□ -2.44
VPS28Q9UK41 SNORD38.2-201ENST00000384470 69 ntBASIC-0.16□□□□□ -2.44
VPS28Q9UK41 MIR759-201ENST00000390224 91 ntBASIC-0.16□□□□□ -2.44
VPS28Q9UK41 uc_338.28-201ENST00000612082 187 ntBASIC-0.16□□□□□ -2.44
VPS28Q9UK41 RNU6-1260P-201ENST00000362944 107 ntBASIC-0.17□□□□□ -2.44
VPS28Q9UK41 RNA5SP257-201ENST00000363023 116 ntBASIC-0.17□□□□□ -2.44
VPS28Q9UK41 RNU6-647P-201ENST00000364243 107 ntBASIC-0.17□□□□□ -2.44
VPS28Q9UK41 Y_RNA.323-201ENST00000365157 109 ntBASIC-0.17□□□□□ -2.44
VPS28Q9UK41 RNU6-1130P-201ENST00000365434 107 ntBASIC-0.17□□□□□ -2.44
VPS28Q9UK41 MIR548H2-201ENST00000408874 88 ntBASIC-0.17□□□□□ -2.44
VPS28Q9UK41 RNU7-74P-201ENST00000459104 62 ntBASIC-0.17□□□□□ -2.44
VPS28Q9UK41 RNU7-13P-201ENST00000516413 62 ntBASIC-0.17□□□□□ -2.44
VPS28Q9UK41 AP001328.1-201ENST00000528550 176 ntBASIC-0.17□□□□□ -2.44
VPS28Q9UK41 Y_RNA.114-201ENST00000363265 113 ntBASIC-0.18□□□□□ -2.44
VPS28Q9UK41 MIR34C-201ENST00000384831 77 ntBASIC-0.18□□□□□ -2.44
VPS28Q9UK41 AC006210.1-201ENST00000424882 111 ntBASIC-0.18□□□□□ -2.44
VPS28Q9UK41 RNU7-159P-201ENST00000459284 62 ntBASIC-0.18□□□□□ -2.44
VPS28Q9UK41 IGKV1-22-201ENST00000524313 326 ntBASIC-0.18□□□□□ -2.44
VPS28Q9UK41 AP001340.1-201ENST00000624405 217 ntBASIC-0.18□□□□□ -2.44
VPS28Q9UK41 AC021753.1-201ENST00000635724 168 ntBASIC-0.18□□□□□ -2.44
VPS28Q9UK41 RNU6-302P-201ENST00000365249 107 ntBASIC-0.19□□□□□ -2.44
VPS28Q9UK41 RNU6-394P-201ENST00000410735 107 ntBASIC-0.19□□□□□ -2.44
VPS28Q9UK41 RNA5SP136-201ENST00000410906 107 ntBASIC-0.19□□□□□ -2.44
VPS28Q9UK41 RN7SKP19-201ENST00000516016 252 ntBASIC-0.19□□□□□ -2.44
VPS28Q9UK41 RNU6-521P-201ENST00000516663 105 ntBASIC-0.19□□□□□ -2.44
VPS28Q9UK41 RNU6-850P-201ENST00000516934 103 ntBASIC-0.19□□□□□ -2.44
VPS28Q9UK41 Y_RNA.198-201ENST00000364013 98 ntBASIC-0.2□□□□□ -2.44
VPS28Q9UK41 SNORA32.1-201ENST00000364514 115 ntBASIC-0.2□□□□□ -2.44
VPS28Q9UK41 Y_RNA.342-201ENST00000365352 113 ntBASIC-0.2□□□□□ -2.44
VPS28Q9UK41 MT-TI-201ENST00000387365 69 ntBASIC-0.2□□□□□ -2.44
VPS28Q9UK41 SNORD110-201ENST00000408189 75 ntBASIC-0.2□□□□□ -2.44
VPS28Q9UK41 MIR548X2-201ENST00000579776 100 ntBASIC-0.2□□□□□ -2.44
VPS28Q9UK41 MIR4677-201ENST00000584153 80 ntBASIC-0.2□□□□□ -2.44
VPS28Q9UK41 Y_RNA.280-201ENST00000364765 112 ntBASIC-0.21□□□□□ -2.44
VPS28Q9UK41 RNU6-524P-201ENST00000384270 107 ntBASIC-0.21□□□□□ -2.44
VPS28Q9UK41 RNU6-182P-201ENST00000516970 105 ntBASIC-0.21□□□□□ -2.44
VPS28Q9UK41 MIR3920-201ENST00000581751 86 ntBASIC-0.21□□□□□ -2.44
VPS28Q9UK41 Y_RNA.773-201ENST00000607168 90 ntBASIC-0.21□□□□□ -2.44
VPS28Q9UK41 Y_RNA.30-201ENST00000362572 97 ntBASIC-0.22□□□□□ -2.44
VPS28Q9UK41 RNU6-161P-201ENST00000363051 106 ntBASIC-0.22□□□□□ -2.44
VPS28Q9UK41 RNU6V-201ENST00000384105 107 ntBASIC-0.22□□□□□ -2.44
VPS28Q9UK41 AL078595.1-201ENST00000404458 226 ntBASIC-0.22□□□□□ -2.44
VPS28Q9UK41 NAMPTP3-201ENST00000569273 224 ntBASIC-0.22□□□□□ -2.44
VPS28Q9UK41 Y_RNA.420-201ENST00000384043 110 ntBASIC-0.23□□□□□ -2.45
VPS28Q9UK41 SNORA75.1-201ENST00000391130 148 ntBASIC-0.23□□□□□ -2.45
VPS28Q9UK41 RNA5SP484-201ENST00000458857 111 ntBASIC-0.23□□□□□ -2.45
VPS28Q9UK41 AC104692.1-201ENST00000472406 90 ntBASIC-0.23□□□□□ -2.45
VPS28Q9UK41 MIR1295B-201ENST00000636144 60 ntBASIC-0.23□□□□□ -2.45
VPS28Q9UK41 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.23□□□□□ -2.45
VPS28Q9UK41 Y_RNA.35-201ENST00000362601 101 ntBASIC-0.24□□□□□ -2.45
VPS28Q9UK41 Y_RNA.125-201ENST00000363371 111 ntBASIC-0.24□□□□□ -2.45
VPS28Q9UK41 Y_RNA.294-201ENST00000364916 102 ntBASIC-0.24□□□□□ -2.45
VPS28Q9UK41 RNU6-929P-201ENST00000384429 107 ntBASIC-0.24□□□□□ -2.45
VPS28Q9UK41 MIR1263-201ENST00000408324 86 ntBASIC-0.24□□□□□ -2.45
VPS28Q9UK41 RNA5SP163-201ENST00000410304 99 ntBASIC-0.24□□□□□ -2.45
VPS28Q9UK41 RNU7-106P-201ENST00000459514 67 ntBASIC-0.24□□□□□ -2.45
VPS28Q9UK41 MTND5P40-201ENST00000559945 246 ntBASIC-0.24□□□□□ -2.45
VPS28Q9UK41 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.25□□□□□ -2.45
VPS28Q9UK41 RNU7-165P-201ENST00000458864 60 ntBASIC-0.25□□□□□ -2.45
VPS28Q9UK41 MIR3144-201ENST00000579460 79 ntBASIC-0.25□□□□□ -2.45
VPS28Q9UK41 U7.2-201ENST00000607576 63 ntBASIC-0.25□□□□□ -2.45
VPS28Q9UK41 MIR1255B1-201ENST00000636325 63 ntBASIC-0.25□□□□□ -2.45
VPS28Q9UK41 Y_RNA.8-201ENST00000362353 102 ntBASIC-0.26□□□□□ -2.45
VPS28Q9UK41 Y_RNA.400-201ENST00000383963 111 ntBASIC-0.26□□□□□ -2.45
VPS28Q9UK41 RNU6-804P-201ENST00000384286 107 ntBASIC-0.26□□□□□ -2.45
VPS28Q9UK41 SCARNA11.2-201ENST00000517183 154 ntBASIC-0.26□□□□□ -2.45
VPS28Q9UK41 MIR3925-201ENST00000584674 77 ntBASIC-0.26□□□□□ -2.45
VPS28Q9UK41 SNORD115-44-201ENST00000365391 82 ntBASIC-0.27□□□□□ -2.45
VPS28Q9UK41 MIR516A2-201ENST00000384888 90 ntBASIC-0.27□□□□□ -2.45
VPS28Q9UK41 MIR329-2-201ENST00000385029 84 ntBASIC-0.27□□□□□ -2.45
VPS28Q9UK41 MIR516A1-201ENST00000385033 90 ntBASIC-0.27□□□□□ -2.45
VPS28Q9UK41 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC-0.27□□□□□ -2.45
VPS28Q9UK41 Y_RNA.215-201ENST00000364204 112 ntBASIC-0.28□□□□□ -2.45
VPS28Q9UK41 Y_RNA.398-201ENST00000383952 99 ntBASIC-0.28□□□□□ -2.45
VPS28Q9UK41 RNU6-756P-201ENST00000383997 107 ntBASIC-0.28□□□□□ -2.45
VPS28Q9UK41 MIR548D2-201ENST00000384955 97 ntBASIC-0.28□□□□□ -2.45
VPS28Q9UK41 SNORA7.5-201ENST00000410672 110 ntBASIC-0.28□□□□□ -2.45
VPS28Q9UK41 HMGN2P22-201ENST00000427588 175 ntBASIC-0.28□□□□□ -2.45
VPS28Q9UK41 AL158147.1-201ENST00000443970 75 ntBASIC-0.28□□□□□ -2.45
VPS28Q9UK41 Y_RNA.270-201ENST00000364693 104 ntBASIC-0.29□□□□□ -2.46
VPS28Q9UK41 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.29□□□□□ -2.46
VPS28Q9UK41 SNORA25.13-201ENST00000516395 103 ntBASIC-0.29□□□□□ -2.46
VPS28Q9UK41 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.29□□□□□ -2.46
VPS28Q9UK41 AL512310.12-203ENST00000640543 90 ntBASIC-0.29□□□□□ -2.46
VPS28Q9UK41 RNU1-141P-201ENST00000364623 158 ntBASIC-0.3□□□□□ -2.46
VPS28Q9UK41 Y_RNA.528-201ENST00000384575 108 ntBASIC-0.3□□□□□ -2.46
VPS28Q9UK41 MIR569-201ENST00000385228 96 ntBASIC-0.3□□□□□ -2.46
VPS28Q9UK41 snosnR66.1-201ENST00000391095 99 ntBASIC-0.3□□□□□ -2.46
VPS28Q9UK41 RNU6-180P-201ENST00000516697 61 ntBASIC-0.3□□□□□ -2.46
VPS28Q9UK41 FTX_2.1-201ENST00000618816 94 ntBASIC-0.3□□□□□ -2.46
VPS28Q9UK41 AC084368.1-201ENST00000620935 65 ntBASIC-0.3□□□□□ -2.46
VPS28Q9UK41 RNU6-1254P-201ENST00000391266 104 ntBASIC-0.31□□□□□ -2.46
VPS28Q9UK41 RNU6-735P-201ENST00000410612 107 ntBASIC-0.31□□□□□ -2.46
VPS28Q9UK41 RNA5SP285-201ENST00000516619 119 ntBASIC-0.31□□□□□ -2.46
VPS28Q9UK41 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-0.31□□□□□ -2.46
VPS28Q9UK41 MIR6514-201ENST00000622549 70 ntBASIC-0.31□□□□□ -2.46
VPS28Q9UK41 RNU6-1313P-201ENST00000362622 102 ntBASIC-0.32□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 175.1 ms