Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 AC023790.1-201ENST00000482174 347 ntBASIC1.75□□□□□ -2.13
CCDC87Q9NVE4 RNU7-156P-201ENST00000517214 74 ntBASIC1.75□□□□□ -2.13
CCDC87Q9NVE4 PVT1_3.1-201ENST00000620853 95 ntBASIC1.75□□□□□ -2.13
CCDC87Q9NVE4 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
CCDC87Q9NVE4 Y_RNA.13-201ENST00000362403 112 ntBASIC1.74□□□□□ -2.13
CCDC87Q9NVE4 Y_RNA.56-201ENST00000362798 112 ntBASIC1.74□□□□□ -2.13
CCDC87Q9NVE4 RNU6-219P-201ENST00000364728 107 ntBASIC1.74□□□□□ -2.13
CCDC87Q9NVE4 MIR635-201ENST00000384830 98 ntBASIC1.74□□□□□ -2.13
CCDC87Q9NVE4 MIR320A-201ENST00000385302 82 ntBASIC1.74□□□□□ -2.13
CCDC87Q9NVE4 RNU6-1254P-201ENST00000391266 104 ntBASIC1.74□□□□□ -2.13
CCDC87Q9NVE4 MIR938-201ENST00000401216 83 ntBASIC1.74□□□□□ -2.13
CCDC87Q9NVE4 AC067940.1-201ENST00000458411 300 ntBASIC1.74□□□□□ -2.13
CCDC87Q9NVE4 AC004223.1-201ENST00000479840 271 ntBASIC1.74□□□□□ -2.13
CCDC87Q9NVE4 RNU7-40P-201ENST00000516397 64 ntBASIC1.74□□□□□ -2.13
CCDC87Q9NVE4 MIR4676-201ENST00000583078 72 ntBASIC1.74□□□□□ -2.13
CCDC87Q9NVE4 AC013244.2-201ENST00000603396 103 ntBASIC1.74□□□□□ -2.13
CCDC87Q9NVE4 AC020891.4-201ENST00000605745 93 ntBASIC1.74□□□□□ -2.13
CCDC87Q9NVE4 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC1.74□□□□□ -2.13
CCDC87Q9NVE4 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
CCDC87Q9NVE4 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.73□□□□□ -2.13
CCDC87Q9NVE4 RNA5SP325-201ENST00000363756 130 ntBASIC1.73□□□□□ -2.13
CCDC87Q9NVE4 RNY1P4-201ENST00000384595 115 ntBASIC1.73□□□□□ -2.13
CCDC87Q9NVE4 MIR222-201ENST00000384992 110 ntBASIC1.73□□□□□ -2.13
CCDC87Q9NVE4 SNORD100-201ENST00000408573 76 ntBASIC1.73□□□□□ -2.13
CCDC87Q9NVE4 Y_RNA.648-201ENST00000459455 110 ntBASIC1.73□□□□□ -2.13
CCDC87Q9NVE4 MIR3660-201ENST00000584845 100 ntBASIC1.73□□□□□ -2.13
CCDC87Q9NVE4 SNORD92-201ENST00000585078 85 ntBASIC1.73□□□□□ -2.13
CCDC87Q9NVE4 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.73□□□□□ -2.13
CCDC87Q9NVE4 MIR1-1-201ENST00000362147 71 ntBASIC1.72□□□□□ -2.13
CCDC87Q9NVE4 Y_RNA.42-201ENST00000362660 108 ntBASIC1.72□□□□□ -2.13
CCDC87Q9NVE4 RNU6-364P-201ENST00000384387 107 ntBASIC1.72□□□□□ -2.13
CCDC87Q9NVE4 MIR520E-201ENST00000384867 87 ntBASIC1.72□□□□□ -2.13
CCDC87Q9NVE4 RNU6-243P-201ENST00000391140 107 ntBASIC1.72□□□□□ -2.13
CCDC87Q9NVE4 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.72□□□□□ -2.13
CCDC87Q9NVE4 RNU6-519P-201ENST00000410590 108 ntBASIC1.72□□□□□ -2.13
CCDC87Q9NVE4 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.72□□□□□ -2.13
CCDC87Q9NVE4 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC1.72□□□□□ -2.13
CCDC87Q9NVE4 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.72□□□□□ -2.13
CCDC87Q9NVE4 RNU6-633P-201ENST00000362612 103 ntBASIC1.71□□□□□ -2.14
CCDC87Q9NVE4 RNU6-242P-201ENST00000384359 107 ntBASIC1.71□□□□□ -2.14
CCDC87Q9NVE4 SNORA25-201ENST00000384384 134 ntBASIC1.71□□□□□ -2.14
CCDC87Q9NVE4 RNU6-997P-201ENST00000384725 107 ntBASIC1.71□□□□□ -2.14
CCDC87Q9NVE4 MIR519A1-201ENST00000385257 85 ntBASIC1.71□□□□□ -2.14
CCDC87Q9NVE4 AC027335.2-201ENST00000624030 375 ntBASIC1.71□□□□□ -2.14
CCDC87Q9NVE4 MIR516A2-201ENST00000384888 90 ntBASIC1.7□□□□□ -2.14
CCDC87Q9NVE4 MIR516A1-201ENST00000385033 90 ntBASIC1.7□□□□□ -2.14
CCDC87Q9NVE4 RPS29P1-201ENST00000465274 159 ntBASIC1.7□□□□□ -2.14
CCDC87Q9NVE4 RNU6-977P-201ENST00000516411 103 ntBASIC1.7□□□□□ -2.14
CCDC87Q9NVE4 RNU6-1223P-201ENST00000517124 104 ntBASIC1.7□□□□□ -2.14
CCDC87Q9NVE4 SNORD36A-201ENST00000362874 73 ntBASIC1.69□□□□□ -2.14
CCDC87Q9NVE4 RNA5SP173-201ENST00000364857 136 ntBASIC1.69□□□□□ -2.14
CCDC87Q9NVE4 Y_RNA.536-201ENST00000384621 113 ntBASIC1.69□□□□□ -2.14
CCDC87Q9NVE4 MIR100-201ENST00000385259 80 ntBASIC1.69□□□□□ -2.14
CCDC87Q9NVE4 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
CCDC87Q9NVE4 SNORA40.6-201ENST00000391153 128 ntBASIC1.69□□□□□ -2.14
CCDC87Q9NVE4 SNORD63B-201ENST00000411005 70 ntBASIC1.69□□□□□ -2.14
CCDC87Q9NVE4 AC002429.1-201ENST00000437672 148 ntBASIC1.69□□□□□ -2.14
CCDC87Q9NVE4 Y_RNA.697-201ENST00000516776 113 ntBASIC1.69□□□□□ -2.14
CCDC87Q9NVE4 MIR4804-201ENST00000581683 73 ntBASIC1.69□□□□□ -2.14
CCDC87Q9NVE4 RNU6-509P-201ENST00000363519 107 ntBASIC1.68□□□□□ -2.14
CCDC87Q9NVE4 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
CCDC87Q9NVE4 AC022137.1-201ENST00000483735 151 ntBASIC1.68□□□□□ -2.14
CCDC87Q9NVE4 AP003327.1-201ENST00000529684 127 ntBASIC1.68□□□□□ -2.14
CCDC87Q9NVE4 MIR151B-201ENST00000584249 96 ntBASIC1.68□□□□□ -2.14
CCDC87Q9NVE4 RNA5SP327-201ENST00000362494 101 ntBASIC1.67□□□□□ -2.14
CCDC87Q9NVE4 Y_RNA.36-201ENST00000362602 112 ntBASIC1.67□□□□□ -2.14
CCDC87Q9NVE4 SNORD114-27-201ENST00000363766 70 ntBASIC1.67□□□□□ -2.14
CCDC87Q9NVE4 MIR598-201ENST00000384868 97 ntBASIC1.67□□□□□ -2.14
CCDC87Q9NVE4 AC015818.7-201ENST00000428754 109 ntBASIC1.67□□□□□ -2.14
CCDC87Q9NVE4 AC087499.7-201ENST00000441958 109 ntBASIC1.67□□□□□ -2.14
CCDC87Q9NVE4 RNU6-267P-201ENST00000516714 103 ntBASIC1.67□□□□□ -2.14
CCDC87Q9NVE4 AL136317.1-201ENST00000612653 226 ntBASIC1.67□□□□□ -2.14
CCDC87Q9NVE4 MIR6788-201ENST00000618842 66 ntBASIC1.67□□□□□ -2.14
CCDC87Q9NVE4 RNU6-369P-201ENST00000362515 102 ntBASIC1.66□□□□□ -2.14
CCDC87Q9NVE4 RNU6-497P-201ENST00000365316 104 ntBASIC1.66□□□□□ -2.14
CCDC87Q9NVE4 RNU1-119P-201ENST00000391122 165 ntBASIC1.66□□□□□ -2.14
CCDC87Q9NVE4 MIR1827-201ENST00000408549 66 ntBASIC1.66□□□□□ -2.14
CCDC87Q9NVE4 SNORD4B-201ENST00000459083 72 ntBASIC1.66□□□□□ -2.14
CCDC87Q9NVE4 AC138907.6-201ENST00000568401 126 ntBASIC1.66□□□□□ -2.14
CCDC87Q9NVE4 AC138869.1-201ENST00000568623 124 ntBASIC1.66□□□□□ -2.14
CCDC87Q9NVE4 Y_RNA.426-201ENST00000384068 113 ntBASIC1.65□□□□□ -2.15
CCDC87Q9NVE4 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.65□□□□□ -2.15
CCDC87Q9NVE4 AC092628.1-201ENST00000436250 252 ntBASIC1.65□□□□□ -2.15
CCDC87Q9NVE4 RNU7-56P-201ENST00000458744 62 ntBASIC1.65□□□□□ -2.15
CCDC87Q9NVE4 RNU7-102P-201ENST00000458948 62 ntBASIC1.65□□□□□ -2.15
CCDC87Q9NVE4 RNU7-106P-201ENST00000459514 67 ntBASIC1.65□□□□□ -2.15
CCDC87Q9NVE4 MIR5588-201ENST00000581890 63 ntBASIC1.65□□□□□ -2.15
CCDC87Q9NVE4 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
CCDC87Q9NVE4 RNU6-979P-201ENST00000383896 107 ntBASIC1.64□□□□□ -2.15
CCDC87Q9NVE4 MIR519C-201ENST00000385053 87 ntBASIC1.64□□□□□ -2.15
CCDC87Q9NVE4 RNU6-466P-201ENST00000391224 103 ntBASIC1.64□□□□□ -2.15
CCDC87Q9NVE4 FABP5P4-201ENST00000437203 171 ntBASIC1.64□□□□□ -2.15
CCDC87Q9NVE4 TRAJ51-201ENST00000504127 63 ntBASIC1.64□□□□□ -2.15
CCDC87Q9NVE4 Y_RNA.219-201ENST00000364232 113 ntBASIC1.63□□□□□ -2.15
CCDC87Q9NVE4 RNU6-1276P-201ENST00000365372 104 ntBASIC1.63□□□□□ -2.15
CCDC87Q9NVE4 SNORD26-201ENST00000384147 75 ntBASIC1.63□□□□□ -2.15
CCDC87Q9NVE4 MIR19B1-201ENST00000384829 87 ntBASIC1.63□□□□□ -2.15
CCDC87Q9NVE4 RNU6-448P-201ENST00000517052 107 ntBASIC1.63□□□□□ -2.15
CCDC87Q9NVE4 RNU6-1260P-201ENST00000362944 107 ntBASIC1.62□□□□□ -2.15
CCDC87Q9NVE4 MIR1236-201ENST00000408340 102 ntBASIC1.62□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 248.4 ms