Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 MIR938-201ENST00000401216 83 ntBASIC1.42□□□□□ -2.18
NKX2-4Q9H2Z4 RNU6-1194P-201ENST00000516208 104 ntBASIC1.42□□□□□ -2.18
NKX2-4Q9H2Z4 RNU6-850P-201ENST00000516934 103 ntBASIC1.42□□□□□ -2.18
NKX2-4Q9H2Z4 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.42□□□□□ -2.18
NKX2-4Q9H2Z4 AC027335.2-201ENST00000624030 375 ntBASIC1.42□□□□□ -2.18
NKX2-4Q9H2Z4 SNORD116-10-201ENST00000363791 102 ntBASIC1.41□□□□□ -2.18
NKX2-4Q9H2Z4 RNU6-765P-201ENST00000516916 99 ntBASIC1.41□□□□□ -2.18
NKX2-4Q9H2Z4 AC013244.2-201ENST00000603396 103 ntBASIC1.41□□□□□ -2.18
NKX2-4Q9H2Z4 MIR8066-201ENST00000617280 78 ntBASIC1.41□□□□□ -2.18
NKX2-4Q9H2Z4 Y_RNA.57-201ENST00000362806 113 ntBASIC1.4□□□□□ -2.19
NKX2-4Q9H2Z4 RNU6-844P-201ENST00000517175 102 ntBASIC1.4□□□□□ -2.19
NKX2-4Q9H2Z4 AC019288.1-201ENST00000557918 224 ntBASIC1.4□□□□□ -2.19
NKX2-4Q9H2Z4 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.39□□□□□ -2.19
NKX2-4Q9H2Z4 SNORD58A-201ENST00000383875 65 ntBASIC1.39□□□□□ -2.19
NKX2-4Q9H2Z4 MIR181B2-201ENST00000385004 89 ntBASIC1.39□□□□□ -2.19
NKX2-4Q9H2Z4 RPS29P23-201ENST00000458635 123 ntBASIC1.39□□□□□ -2.19
NKX2-4Q9H2Z4 MIR4804-201ENST00000581683 73 ntBASIC1.39□□□□□ -2.19
NKX2-4Q9H2Z4 SNORD92-201ENST00000585078 85 ntBASIC1.39□□□□□ -2.19
NKX2-4Q9H2Z4 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.39□□□□□ -2.19
NKX2-4Q9H2Z4 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.39□□□□□ -2.19
NKX2-4Q9H2Z4 RNU6-369P-201ENST00000362515 102 ntBASIC1.38□□□□□ -2.19
NKX2-4Q9H2Z4 Y_RNA.42-201ENST00000362660 108 ntBASIC1.38□□□□□ -2.19
NKX2-4Q9H2Z4 MIR1827-201ENST00000408549 66 ntBASIC1.38□□□□□ -2.19
NKX2-4Q9H2Z4 SNORA25.8-201ENST00000364831 128 ntBASIC1.37□□□□□ -2.19
NKX2-4Q9H2Z4 Y_RNA.558-201ENST00000384685 113 ntBASIC1.37□□□□□ -2.19
NKX2-4Q9H2Z4 MIR520F-201ENST00000384824 87 ntBASIC1.37□□□□□ -2.19
NKX2-4Q9H2Z4 RNU1-119P-201ENST00000391122 165 ntBASIC1.37□□□□□ -2.19
NKX2-4Q9H2Z4 FABP5P4-201ENST00000437203 171 ntBASIC1.37□□□□□ -2.19
NKX2-4Q9H2Z4 RNU7-102P-201ENST00000458948 62 ntBASIC1.37□□□□□ -2.19
NKX2-4Q9H2Z4 Y_RNA.697-201ENST00000516776 113 ntBASIC1.37□□□□□ -2.19
NKX2-4Q9H2Z4 RNU7-10P-201ENST00000607194 63 ntBASIC1.37□□□□□ -2.19
NKX2-4Q9H2Z4 MIR26B-201ENST00000362251 77 ntBASIC1.36□□□□□ -2.19
NKX2-4Q9H2Z4 Y_RNA.190-201ENST00000363964 101 ntBASIC1.36□□□□□ -2.19
NKX2-4Q9H2Z4 RNU6-1134P-201ENST00000365156 101 ntBASIC1.36□□□□□ -2.19
NKX2-4Q9H2Z4 MIR19B1-201ENST00000384829 87 ntBASIC1.36□□□□□ -2.19
NKX2-4Q9H2Z4 SNORD100-201ENST00000408573 76 ntBASIC1.36□□□□□ -2.19
NKX2-4Q9H2Z4 AC026421.1-201ENST00000519101 163 ntBASIC1.36□□□□□ -2.19
NKX2-4Q9H2Z4 AL513043.2-201ENST00000573941 143 ntBASIC1.36□□□□□ -2.19
NKX2-4Q9H2Z4 MIR548H5-201ENST00000580314 60 ntBASIC1.36□□□□□ -2.19
NKX2-4Q9H2Z4 AL136317.1-201ENST00000612653 226 ntBASIC1.36□□□□□ -2.19
NKX2-4Q9H2Z4 AC025521.1-201ENST00000621624 286 ntBASIC1.36□□□□□ -2.19
NKX2-4Q9H2Z4 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
NKX2-4Q9H2Z4 Y_RNA.56-201ENST00000362798 112 ntBASIC1.35□□□□□ -2.19
NKX2-4Q9H2Z4 RNU6-997P-201ENST00000384725 107 ntBASIC1.35□□□□□ -2.19
NKX2-4Q9H2Z4 MIR635-201ENST00000384830 98 ntBASIC1.35□□□□□ -2.19
NKX2-4Q9H2Z4 MIR320A-201ENST00000385302 82 ntBASIC1.35□□□□□ -2.19
NKX2-4Q9H2Z4 RNU7-56P-201ENST00000458744 62 ntBASIC1.35□□□□□ -2.19
NKX2-4Q9H2Z4 MIR4679-1-201ENST00000637619 75 ntBASIC1.35□□□□□ -2.19
NKX2-4Q9H2Z4 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.34□□□□□ -2.19
NKX2-4Q9H2Z4 MIR200A-201ENST00000384875 90 ntBASIC1.34□□□□□ -2.19
NKX2-4Q9H2Z4 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
NKX2-4Q9H2Z4 Y_RNA.536-201ENST00000384621 113 ntBASIC1.33□□□□□ -2.2
NKX2-4Q9H2Z4 SNORD89-201ENST00000390981 114 ntBASIC1.33□□□□□ -2.2
NKX2-4Q9H2Z4 MIR942-201ENST00000401111 86 ntBASIC1.33□□□□□ -2.2
NKX2-4Q9H2Z4 MIR516A2-201ENST00000384888 90 ntBASIC1.32□□□□□ -2.2
NKX2-4Q9H2Z4 MIR516A1-201ENST00000385033 90 ntBASIC1.32□□□□□ -2.2
NKX2-4Q9H2Z4 RNU6-1254P-201ENST00000391266 104 ntBASIC1.32□□□□□ -2.2
NKX2-4Q9H2Z4 SNORD63B-201ENST00000411005 70 ntBASIC1.32□□□□□ -2.2
NKX2-4Q9H2Z4 RNU6-1110P-201ENST00000516462 101 ntBASIC1.32□□□□□ -2.2
NKX2-4Q9H2Z4 AP003327.1-201ENST00000529684 127 ntBASIC1.32□□□□□ -2.2
NKX2-4Q9H2Z4 AC008608.1-201ENST00000603910 127 ntBASIC1.32□□□□□ -2.2
NKX2-4Q9H2Z4 RNU6-535P-201ENST00000384722 107 ntBASIC1.31□□□□□ -2.2
NKX2-4Q9H2Z4 RNU6-243P-201ENST00000391140 107 ntBASIC1.31□□□□□ -2.2
NKX2-4Q9H2Z4 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.31□□□□□ -2.2
NKX2-4Q9H2Z4 U7.7-201ENST00000459276 60 ntBASIC1.31□□□□□ -2.2
NKX2-4Q9H2Z4 SNORD124-201ENST00000459577 104 ntBASIC1.31□□□□□ -2.2
NKX2-4Q9H2Z4 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.31□□□□□ -2.2
NKX2-4Q9H2Z4 MIR4295-201ENST00000585286 85 ntBASIC1.31□□□□□ -2.2
NKX2-4Q9H2Z4 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.3□□□□□ -2.2
NKX2-4Q9H2Z4 Y_RNA.30-201ENST00000362572 97 ntBASIC1.3□□□□□ -2.2
NKX2-4Q9H2Z4 SNORD116-22-201ENST00000384430 92 ntBASIC1.3□□□□□ -2.2
NKX2-4Q9H2Z4 RNY1P4-201ENST00000384595 115 ntBASIC1.3□□□□□ -2.2
NKX2-4Q9H2Z4 AC092628.1-201ENST00000436250 252 ntBASIC1.3□□□□□ -2.2
NKX2-4Q9H2Z4 AC087343.1-201ENST00000477341 475 ntBASIC1.3□□□□□ -2.2
NKX2-4Q9H2Z4 TRAJ51-201ENST00000504127 63 ntBASIC1.3□□□□□ -2.2
NKX2-4Q9H2Z4 RNU6-448P-201ENST00000517052 107 ntBASIC1.3□□□□□ -2.2
NKX2-4Q9H2Z4 RNA5SP404-201ENST00000517118 132 ntBASIC1.3□□□□□ -2.2
NKX2-4Q9H2Z4 RN7SL793P-201ENST00000583259 296 ntBASIC1.3□□□□□ -2.2
NKX2-4Q9H2Z4 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.29□□□□□ -2.2
NKX2-4Q9H2Z4 MIR520H-201ENST00000385126 88 ntBASIC1.29□□□□□ -2.2
NKX2-4Q9H2Z4 RNU7-106P-201ENST00000459514 67 ntBASIC1.29□□□□□ -2.2
NKX2-4Q9H2Z4 RNU1-124P-201ENST00000363861 145 ntBASIC1.28□□□□□ -2.2
NKX2-4Q9H2Z4 RNU6-291P-201ENST00000384720 107 ntBASIC1.28□□□□□ -2.2
NKX2-4Q9H2Z4 Y_RNA.609-201ENST00000410669 89 ntBASIC1.28□□□□□ -2.2
NKX2-4Q9H2Z4 RNA5SP61-201ENST00000516453 100 ntBASIC1.28□□□□□ -2.2
NKX2-4Q9H2Z4 AC138907.6-201ENST00000568401 126 ntBASIC1.28□□□□□ -2.2
NKX2-4Q9H2Z4 AC138869.1-201ENST00000568623 124 ntBASIC1.28□□□□□ -2.2
NKX2-4Q9H2Z4 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.27□□□□□ -2.21
NKX2-4Q9H2Z4 Y_RNA.17-201ENST00000362433 111 ntBASIC1.27□□□□□ -2.21
NKX2-4Q9H2Z4 SNORD36A-201ENST00000362874 73 ntBASIC1.27□□□□□ -2.21
NKX2-4Q9H2Z4 SNORD73B-201ENST00000364394 72 ntBASIC1.27□□□□□ -2.21
NKX2-4Q9H2Z4 SNORD114-24-201ENST00000365029 72 ntBASIC1.27□□□□□ -2.21
NKX2-4Q9H2Z4 SNORD105-201ENST00000386910 85 ntBASIC1.27□□□□□ -2.21
NKX2-4Q9H2Z4 RNU6-519P-201ENST00000410590 108 ntBASIC1.27□□□□□ -2.21
NKX2-4Q9H2Z4 RNU7-195P-201ENST00000458793 62 ntBASIC1.27□□□□□ -2.21
NKX2-4Q9H2Z4 MIR5000-201ENST00000577717 103 ntBASIC1.27□□□□□ -2.21
NKX2-4Q9H2Z4 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC1.27□□□□□ -2.21
NKX2-4Q9H2Z4 MIR519A1-201ENST00000385257 85 ntBASIC1.26□□□□□ -2.21
NKX2-4Q9H2Z4 MIR618-201ENST00000385287 98 ntBASIC1.26□□□□□ -2.21
NKX2-4Q9H2Z4 Y_RNA.809-201ENST00000516058 95 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 212.1 ms